| Literature DB >> 30131888 |
Isabell Weickardt1, Andreas Zehnsdorf1, Walter Durka2.
Abstract
PREMISE OF THE STUDY: To enhance the understanding of the recent invasion process of the clonal waterweed Elodea nuttallii (Hydrocharitaceae), analyses of population structure and genotypic diversity need to be undertaken, for which genetic markers are needed. METHODS ANDEntities:
Keywords: Elodea canadensis; Elodea nuttallii; Hydrocharitaceae; clonality; invasive species
Year: 2018 PMID: 30131888 PMCID: PMC5947605 DOI: 10.1002/aps3.1146
Source DB: PubMed Journal: Appl Plant Sci ISSN: 2168-0450 Impact factor: 1.936
Characteristics of 24 microsatellite markers developed in Elodea nuttallii and cross‐species amplification in E. canadensis
| Locus | Primer sequences (5′–3′) | Repeat motif | Fluorescent dye | PCR mix | Fragment analysis mix |
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| GenBank accession no. | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Allele size range (bp) |
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| Allele size range (bp) |
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| Enu01 |
| (GA)7 | NED | e | 4 | 119 | 1 | 1 | 0 | 119 | 1 | 1 | 0 |
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| Enu04 |
| (TC)10 | PET | b | 1 | 121–129 | 4 | 3 | 0 | 123–129 | 3 | 1 | 1.1 |
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| Enu05 |
| (TC)7 | FAM | — | 3 | 93–128 | 10 | 3 | 0 | 93–116 | 3 | 2 | 0 |
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| Enu06 |
| (TC)8 | VIC | — | 2 | 101–107 | 3 | 2 | 0 | 101–109 | 5 | 3 | 0 |
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| Enu07 |
| (CT)8 | VIC | a | 1 | 106–114 | 4 | 3 | 0 | 110–114 | 3 | 3 | 0 |
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| Enu09 |
| (TCT)9 | VIC | — | 4 | 108–126 | 7 | 4 | 0 | 108–129 | 6 | 4 | 0 |
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| Enu10 |
| (GAG)7 | NED | d | 3 | 106–118 | 5 | 3 | 0.8 | 109–118 | 3 | 2 | 2.2 |
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| Enu12 |
| (TTC)11 | NED | c | 2 | 104–128 | 9 | 4 | 0 | 104–119 | 4 | 3 | 0 |
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| Enu13 |
| (CTT)9 | VIC | — | 3 | 108–135 | 9 | 4 | 0 | 111–135 | 7 | 3 | 0 |
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| Enu15 |
| (TC)6 | FAM | — | 4 | 150–160 | 3 | 3 | 0 | 138–160 | 3 | 2 | 0 |
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| Enu19 |
| (GA)6 | NED | c | 2 | 155–162 | 3 | 2 | 0.4 | 155–162 | 3 | 2 | 91.3 |
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| Enu20 |
| (CT)6 | PET | d | 3 | 156–164 | 5 | 3 | 0 | 156–158 | 2 | 1 | 89.1 |
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| Enu21 |
| (TC)6 | NED | b | 1 | 132–170 | 7 | 3 | 1.5 | 150–170 | 4 | 3 | 4.4 |
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| Enu22 |
| (TCC)7 | FAM | f | 1 | 141 | 1 | 1 | 0 | 141 | 1 | 1 | 5.4 |
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| Enu24 |
| (CTT)9 | VIC | a | 1 | 160 | 1 | 1 | 0 | 160 | 1 | 1 | 0 |
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| Enu26 |
| (TTC)11 | FAM | — | 2 | 121–149 | 10 | 4 | 0 | 121–146 | 3 | 2 | 0 |
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| Enu28 |
| (TCT)6 | NED | e | 4 | 149–158 | 3 | 3 | 3.8 | 149–158 | 3 | 2 | 4.4 |
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| Enu30 |
| (GA)8 | PET | c | 2 | 218–228 | 3 | 2 | 3.4 | 222 | 1 | 1 | 97.8 |
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| Enu35 |
| (GGA)6 | FAM | f | 1 | 188–200 | 4 | 2 | 0.4 | 188–203 | 4 | 3 | 0 |
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| Enu36 |
| (GAA)7 | PET | e | 4 | 184–188 | 2 | 2 | 1.1 | 185 | 1 | 1 | 1.1 |
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| Enu37 |
| (TTC)11 | VIC | a | 1 | 185–216 | 9 | 3 | 1.1 | 185–198 | 3 | 2 | 91.3 |
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| Enu38 |
| (AGT)15 | PET | b | 1 | 180–219 | 9 | 3 | 0 | 183–216 | 9 | 4 | 0 |
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| Enu39 |
| (CTT)10 | NED | d | 3 | 214–232 | 7 | 4 | 3.0 | 220–232 | 5 | 3 | 0 |
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| Enu41 |
| (CTT)14 | NED | b | 1 | 230–257 | 8 | 4 | 2.0 | 223–254 | 9 | 4 | 3.3 |
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— = singleplex reaction; A = number of alleles; A max = maximal number of alleles detected per individual; N = number of individuals sampled; P NA = percentage homozygous null alleles.
Forward primer sequences include CAG and M13R tags and reverse primers include GTTT PIG‐tails (in italics).
Geographic coordinates for the populations and voucher information are given in Appendix 1.
Genotypic and genetic variation of 24 newly developed microsatellites at population and overall level in two invasive populations each of Elodea nuttallii and E. canadensis.a
| Locus |
|
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|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cospudener See ( | Großer Goitzschesee ( | Gravel pit Kleinpösna ( | Parthe River ( | |||||||||
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| Enu01 | 1 | 0 | 0.000 | 1 | 0 | 0.000 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu04 | 1 | 0 | 0.000 | 4 | 0.095 | 0.343 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu05 | 1 | 0 | 0.000 | 3 | 0.048 | 0.084 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu06 | 1 | 0 | 0.000 | 2 | 0.024 | 0.015 | 2 | 0 | 0.074 | 2 | 0 | 0.533 |
| Enu07 | 1 | 1 | 0.677 | 1 | 1 | 0.506 | 1 | 1 | 0.675 | 1 | 1 | 0.690 |
| Enu09 | 1 | 1 | 0.677 | 7 | 1 | 0.715 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu10 | 1 | 1 | 0.512 | 2 | 1 | 0.506 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu12 | 1 | 1 | 0.677 | 9 | 1 | 0.720 | 1 | 1 | 0.509 | 1 | 1 | 0.526 |
| Enu13 | 1 | 1 | 0.512 | 3 | 1 | 0.570 | 4 | 1 | 0.614 | 2 | 0.8 | 0.490 |
| Enu15 | 1 | 1 | 0.512 | 7 | 0.667 | 0.616 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu19 | 1 | 0 | 0.000 | 3 | 0.357 | 0.385 | — | — | — | — | — | — |
| Enu20 | 1 | 1 | 0.512 | 2 | 0.857 | 0.485 | — | — | — | — | — | — |
| Enu21 | 1 | 1 | 0.512 | 2 | 0.976 | 0.505 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu22 | 1 | 0 | 0.000 | 1 | 0 | 0.000 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu24 | 1 | 0 | 0.000 | 1 | 0 | 0.000 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu26 | 1 | 1 | 0.759 | 12 | 1 | 0.796 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu28 | 1 | 0 | 0.000 | 1 | 0 | 0.000 | 1 | 1 | 0.509 | 1 | 1 | 0.526 |
| Enu30 | 1 | 0 | 0.000 | 2 | 0.095 | 0.060 | — | — | — | — | — | — |
| Enu35 | 1 | 0 | 0.000 | 1 | 0 | 0.000 | 1 | 0 | 0.000 | 2 | 0.8 | 0.490 |
| Enu36 | 1 | 1 | 0.512 | 2 | 0.619 | 0.378 | 1 | 0 | 0.000 | 1 | 0 | 0.000 |
| Enu37 | 1 | 1 | 0.512 | 5 | 0.81 | 0.479 | — | — | — | — | — | — |
| Enu38 | 2 | 1 | 0.677 | 4 | 0.952 | 0.604 | 1 | 1 | 0.675 | 2 | 1 | 0.689 |
| Enu39 | 1 | 1 | 0.677 | 5 | 0.929 | 0.563 | 2 | 0.185 | 0.127 | 3 | 1 | 0.608 |
| Enu41 | 1 | 1 | 0.677 | 8 | 0.929 | 0.688 | 1 | 1 | 0.675 | 1 | 1 | 0.690 |
| Average | 1.04 | 0.583 | 0.350 | 3.67 | 0.557 | 0.376 | 1.25 | 0.309 | 0.193 | 1.30 | 0.38 | 0.262 |
— = no amplification; H e = expected heterozygosity corrected for allele dosage; H o = observed heterozygosity; N = number of individuals sampled; N gt = number of genotypes.
Geographic coordinates for the populations and voucher information are given in Appendix 1.
| Species | Country, municipality/state, waterbody | Geographic coordinates | No. of ramets | Voucher |
|---|---|---|---|---|
|
| Germany, Bavaria, Chiemsee | 47°52′21″N, 12°27′36″E | 1 | EMT_41 |
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| Germany, Bavaria, Ferchensee | 47°26′19″N, 11°12′49″E | 1 | EMT_42 |
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| Germany, Bavaria, Froschhauser See | 47°41′13″N, 11°13′28″E | 1 | EMT_37 |
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| Germany, Bavaria, Moosach | 48°23′38″N, 11°43′27″E | 1 | EMT_38 |
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| Germany, Bavaria, Starnberge See | 47°54′45″N, 11°18′25″E | 1 | EMT_43 |
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| Germany, Lower Saxony, Hauptkanal | 52°53′20″N, 8°58′53″E | 1 | EMT_28 |
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| Germany, North Rhine‐Westphalia, Diersfordter Waldsee | 51°41′46″N, 6°31′54″E | 1 | EMT_70 |
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| Germany, North Rhine‐Westphalia, Tenderingsee | 51°35′43″N, 6°43′30″E | 1 | EMT_67 |
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| Germany, Saxony, Delinkateich | 51°24′25″N, 14°45′00″E | 1 | EMT_11 |
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| Germany, Saxony, gravel pit Kleinpösna | 51°18′43″N, 12°31′51″E | 27 | EMT_130 |
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| Germany, Saxony, Kleinliebenau | 51°22′01″N, 12°13′31″E | 1 | EMT_328 |
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| Germany, Saxony, Kulkwitzer See | 51°17′52″N, 12°15′14″E | 1 | EMT_51 |
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| Germany, Saxony, Cospudener See | 51°17′06″N, 12°21′38″E | 1 | EMT_323 |
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| Germany, Saxony, Leipzig | 51°19′41″N, 12°17′27″E | 2 | EMT_324 |
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| Germany, Saxony, Nangteich | 51°24′30″N, 14°45′01″E | 1 | EMT_329 |
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| Germany, Saxony, Parthe | 51°22′09″N, 12°24′47″E | 11 | EMT_266 |
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| Germany, Saxony‐Anhalt, Hasselvorsperre | 51°42′33″N, 10°49′51″E | 1 | EMT_50 |
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| Germany, Saxony‐Anhalt, Mulde | 51°40′51″N, 12°17′41″E | 2 | EMT_249 |
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| Germany, Saxony‐Anhalt, Raßnitzer See | 51°22′0″N, 12°4′41″E | 5 | EMT_87 |
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| Norway, Buskerud, Tyrifjorden | 59°57′51″N, 9°59′47″E | 1 | EMT_317 |
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| Austria, Salzkammergut, Grundlsee | 47°37′58″N, 13°51′52″E | 1 | EMT_39 |
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| Peru, Cusco, Oropesa | −13°33′37″N, −71°51′40″E | 1 | EMT_338 |
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| Purchased online (Nymphaion) | 6 | EMT_347 | |
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| Slovenia, Podravska, Ptujsko jezero | 46°23′14″N, 15°54′25″E | 1 | EMT_307 |
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| USA, Alaska, Alexander Lake | 61°44′38″N, −150°53′31″E | 1 | EMT_61 |
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| USA, Maryland, Conococheague Creek | 39°41′38″N, −77°48′34″E | 2 | EMT_308 |
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| USA, New York, Collins Lake | 42°49′38″N, −73°57′15″E | 6 | EMT_284 |
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| USA, New York, Lake Ontario | 43°18′43″N, −77°43′13″E | 9 | EMT_285 |
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| USA, New York, Niagara River | 43°06′26″N, −78°58′41″E | 1 | EMT_300 |
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| USA, Pennsylvania, Erie See | 42°07′41″N, −80°08′33″E | 1 | EMT_303 |
|
| Germany, Baden‐Württemberg, Bodensee | 47°44′59″N, 9°07′54″E | 3 | EMT_359 |
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| Germany, Baden‐Württemberg, Brigach | 47°59′51″N, 8°27′48″E | 1 | EMT_32 |
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| Germany, Baden‐Württemberg, Donau | 47°54′57″N, 8°34′9″E | 2 | EMT_30 |
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| Germany, Baden‐Württemberg, Kapuzinergraben | 48°17′26″N, 7°47′46″E | 3 | EMT_354 |
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| Germany, Baden‐Württemberg, Rhein | 48°12′26″N, 7°39′31″E | 14 | EMT_356 |
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| Germany, Bavaria, Chiemsee | 47°51′49″N, 12°24′58″E | 1 | EMT_40 |
|
| Germany, Bavaria, Ilm | 48°25′58″N, 11°23′55″E | 1 | EMT_35 |
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| Germany, Bavaria, Kleine Vils | 48°29′8″N, 12°18′18″E | 1 | EMT_36 |
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| Germany, Bavaria, Starnberge See | 47°54′53″N, 11°17′41″E | 3 | EMT_34 |
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| Germany, Berlin, Tegeler See | 52°35′33″N, 13°15′44″E | 1 | EMT_274 |
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| Germany, North Rhine‐Westphalia, Baldeneysee | 51°23′56″N, 7°02′56″E | 1 | EMT_208 |
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| Germany, North Rhine‐Westphalia, Hürther Waldsee | 50°52′26″N, 6°50′36″E | 1 | EMT_64 |
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| Germany, North Rhine‐Westphalia, Kemnader See | 51°25′20″N, 7°16′00″E | 4 | EMT_213 |
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| Germany, North Rhine‐Westphalia, Lippe | 51°41′43″N, 7°50′28″E | 1 | EMT_254 |
|
| Germany, North Rhine‐Westphalia, Rotbach | 51°34′24″N, 6°47′40″E | 1 | EMT_237 |
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| Germany, Rhineland‐Palatinate, Dreifelder Weiher | 50°35′27″N, 7°49′33″E | 1 | EMT_66 |
|
| Germany, Rhineland‐Palatinate, Laacher See | 50°24′48″N, 7°16′20″E | 1 | EMT_69 |
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| Germany, Rhineland‐Palatinate, Rhein | 49°17′9″N, 8°27′21″E | 2 | EMT_65 |
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| Germany, Rhineland‐Palatinate, Schäferweiher | 50°33′40″N, 7°44′01″E | 1 | EMT_68 |
|
| Germany, Saxony, Berzdorfer See | 51°06′13″N, 14°58′35″E | 1 | EMT_45 |
|
| Germany, Saxony, Chausseeteich | 51°24′38″N, 14°47′19″E | 2 | EMT_268 |
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| Germany, Saxony, Cospudener See | 51°15′37″N, 12°20′19″E | 21 | EMT_252 |
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| Germany, Saxony, gravel pit Kleinliebenau | 51°22′08″N, 12°11′59″E | 3 | EMT_337 |
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| Germany, Saxony, gravel pit Kleinpösna | 51°18′35″N, 12°31′45″E | 23 | EMT_104 |
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| Germany, Saxony, Heideteich | 51°24′36″N, 14°45′33″E | 2 | EMT_23 |
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| Germany, Saxony, Leipzig | 51°15′45″N, 12°21′21″E | 2 | EMT_321 |
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| Germany, Saxony, Mulde | 51°31′40″N, 12°36′28″E | 1 | EMT_275 |
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| Germany, Saxony, Mylau | 50°37′12″N, 12°16′33″E | 1 | EMT_331 |
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| Germany, Saxony, Parthe | 51°21′40″N, 12°24′28″E | 9 | EMT_266 |
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| Germany, Saxony, Unterer Oberteich | 51°24′36″N, 14°47′17″E | 3 | EMT_21 |
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| Germany, Saxony, Weiße Elster | 51°12′19″N, 12°18′16″E | 20 | EMT_234 |
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| Germany, Saxony, Weiße Schöps | 51°22′57″N, 14°44′01″E | 1 | EMT_335 |
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| Germany, Saxony, Winterteich | 51°23′16″N, 14°51′42″E | 1 | EMT_267 |
|
| Germany, Saxony, Zwenkauer See | 51°12′57″N, 12°21′15″E | 12 | EMT_261 |
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| Germany, Saxony‐Anhalt, Elbe | 52°02′01″N, 1°52′39″E | 4 | EMT_256 |
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| Germany, Saxony‐Anhalt, Großer Goitzschesee | 51°37′12″N, 12°23′59″E | 43 | EMT_185 |
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| Germany, Saxony‐Anhalt, Mulde | 51°35′44″N, 12°30′03″E | 7 | EMT_204 |
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| Germany, Saxony‐Anhalt, Muldestausee | 51°37′16″N, 12°25′01″E | 15 | EMT_201 |
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| Germany, Saxony‐Anhalt, Raßnitzer See | 51°21′59″N, 12°4′59″E | 19 | EMT_76 |
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| Germany, Saxony‐Anhalt, Saale | 51°34′52″N, 11°48′46″E | 1 | EMT_242 |
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| Germany, Saxony‐Anhalt, Seelhausener See | 51°35′19″N, 12°26′27″E | 9 | EMT_56 |
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| Peru, Cusco, Oropesa | −13°33′37″N, −71°51′40″E | 1 | EMT_340 |
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| Purchased online (Nymphaion) | 4 | EMT_343 | |
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| Slovenia, Podravska, Drava | 46°24′17″N, 16°08′59″E | 1 | EMT_306 |
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| Slovenia, Oresje | 45°53′11″N, 15°16′07″E | 1 | EMT_305 |
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| USA, Alaska, Potter Marsh | 61°03′47″N, −149°47′55″E | 1 | EMT_60 |
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| USA, Maryland, Potomac River | 39°36′27″N, −77°58′08″E | 1 | EMT_310 |
|
| USA, New York, Collins Lake | 42°49′38″N, −73°57′15″E | 1 | EMT_284.2 |
|
| USA, New York, Lake Ontario | 43°21′22″N, −77°56′16″E | 1 | EMT_298 |
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| USA, New York, Niagara River | 43°03′36″N, −78°58′41″E | 2 | EMT_301 |
|
| USA, Pennsylvania, Lake Erie | 42°07′41″N, −80°08′25″E | 1 | EMT_302 |
|
| USA, Pennsylvania, Quaker Lake | 41°58′39″N, −75°55′08″E | 2 | EMT_314 |
|
| USA, Virginia, Gunston Cove | 38°40′30″N, −77°09′20″E | 3 | EMT_311 |
Vouchers are deposited at the Helmholtz Centre for Environmental Research, Permoserstraße 15, 04318 Leipzig, Germany.