Literature DB >> 30131888

Development and characterization of simple sequence repeat markers for the invasive tetraploid waterweed Elodea nuttallii (Hydrocharitaceae).

Isabell Weickardt1, Andreas Zehnsdorf1, Walter Durka2.   

Abstract

PREMISE OF THE STUDY: To enhance the understanding of the recent invasion process of the clonal waterweed Elodea nuttallii (Hydrocharitaceae), analyses of population structure and genotypic diversity need to be undertaken, for which genetic markers are needed. METHODS AND
RESULTS: High-throughput sequencing of DNA enriched for microsatellites was used to develop 24 loci that were characterized in E. nuttallii, 21 of which were polymorphic, with the number of alleles ranging from two to 10. In two populations, expected heterozygosity ranged among loci between zero and 0.796. In the congener E. canadensis, all markers yielded PCR products, 19 of which were polymorphic, with two to nine alleles and expected heterozygosity ranging from zero to 0.690 in two populations.
CONCLUSIONS: The markers described should be useful for future studies of population structure and clonal diversity of E. nuttallii as well as E. canadensis in their native and invasive range.

Entities:  

Keywords:  Elodea canadensis; Elodea nuttallii; Hydrocharitaceae; clonality; invasive species

Year:  2018        PMID: 30131888      PMCID: PMC5947605          DOI: 10.1002/aps3.1146

Source DB:  PubMed          Journal:  Appl Plant Sci        ISSN: 2168-0450            Impact factor:   1.936


Western waterweed (Elodea nuttallii (Planch.) H. St. John, Hydrocharitaceae) is a tetraploid, dioecious, submerged freshwater macrophyte native to North America that is invasive in Europe and Japan. In its invasive range, almost exclusively female plants have been found and the reproduction is primarily vegetative (Cook and Urmi‐König, 1985). In Europe, it was first found in 1939 in Belgium and has quickly spread to 19 other European countries (Cook and Urmi‐König, 1985; Hussner, 2012). Because it can form dense dominant stands, E. nuttallii constrains water flow in rivers and the recreational use of lakes. Furthermore, the aggressive growth of this species may influence abiotic factors, outcompete native plants, change the makeup of the aquatic vegetation, and thus impact fish occurrence (Carey et al., 2016). Because no effective, species‐specific management options are known (Zehnsdorf et al., 2015), more information about the species’ biology and population structure is urgently needed. The analysis of genetic variation and population structure can give insights into reproduction mode, dispersal patterns, and the invasion process in general and may allow the identification of source regions in the native range (e.g., Durka et al., 2005; Voss et al., 2012). Microsatellite markers are available for E. canadensis Michx. (Huotari et al., 2010); however, cross‐species amplification in E. nuttallii had not been tested (T. Huotari and H. Korpelainen, University of Helsinki, Helsinki, Finland, personal communication). Moreover, 60% of these markers only amplified in E. canadensis samples from invasive but not from native populations (Huotari et al., 2011), and preliminary tests revealed no or nonreproducible amplification products in our samples from both E. canadensis and E. nuttallii. Additionally, the available markers have limited power to discriminate clones because of low number of alleles (mean number of alleles = 2.8; Huotari et al., 2011) and their limited number (N = 10). Therefore, we developed new markers specifically for E. nuttallii. We demonstrate their utility for native and invasive samples as well as trans‐species amplification in E. canadensis, thus allowing for comparative analyses of clonal variation between native and invasive range and among species.

METHODS AND RESULTS

Total genomic DNA from E. nuttallii collected in Großer Goitzschesee, Germany (51°37′12″N, 12°23′59″E), was isolated using the cetyltrimethylammonium bromide (CTAB) extraction procedure of Doyle (1991) and sent to GenoScreen (Lille, France). One microgram of DNA was used for the development of microsatellites through 454 GS‐FLX Titanium pyrosequencing (Roche Applied Science, Basel, Switzerland) of enriched DNA libraries following Malausa et al. (2011). Briefly, total DNA was mechanically fragmented and enriched for AG, AC, AAC, AAG, AGG, ACG, ACAT, and ATCT repeat motifs. Enriched fragments were subsequently amplified. PCR products were purified and quantified, and GsFLX libraries were then prepared following the manufacturer's protocols and sequenced on a GsFLX PTP (Roche Applied Science). Using QDD (Meglécz et al., 2010), adapters and vectors were removed, microsatellites were detected, their redundancy and association with mobile elements were tested, sequences with target microsatellites were selected, and primers were designed. Among 2815 sequences comprising a microsatellite motif, 168 bioinformatically validated primer sets were designed on perfect motif microsatellites. We chose 41 primer pairs based on their motif, repeat number, and length of expected amplification product. We aimed to equally represent dinucleotide and trinucleotide repeats as well as short (90–140 bp), medium (140–190 bp), and long (190–250 bp) amplification products. Furthermore, microsatellites with high repeat numbers were favored because they often display a higher mutation rate. These 41 primer pairs were ordered from Eurofins (Ebersberg, Germany) and were screened using the method of Schuelke (2000), i.e., adding CAG‐ or M13R‐tags to forward primers, adding GTTT‐tags to reverse primers (Brownstein et al., 1996), and using fluorescent‐labeled CAG and M13R primers. The PCR reaction contained 5 μL QIAGEN Multiplex PCR Master Mix (QIAGEN, Hilden, Germany), 1 μL of 2.5 μM tagged forward primer and 0.5 μM reverse primer, 1 μL of 2.5 μM fluorescent‐labeled CAG‐ or M13R‐tag, 2 μL of ultrapure water (Carl Roth GmbH, Karlsruhe, Germany), and 1 μL of DNA (~400 ng/μL). A touchdown protocol was used with cycles as follows: 95°C for 15 min; 20 cycles of 94°C for 30 s, 60°C for 30 s (decreasing 0.5°C per annealing cycle), and 72°C for 90 s; 20 cycles of 94°C for 30 s, 50°C for 30 s, and 72°C for 90 s; and a final elongation step of 10 min at 72°C. PCR products (1 μL) were multiplexed into four mixes (Table 1) with 10 μL of Hi‐Di Formamide (Thermo Fisher Scientific, Waltham, Massachusetts, USA) for fragment length analysis on an ABI 3130xl genetic analyzer (Thermo Fisher Scientific) with GeneScan 500 LIZ Size Standard (Thermo Fisher Scientific). Genotyping was performed using GeneMapper Software 5 (Thermo Fisher Scientific), allowing for a maximum of four alleles, assuming tetraploidy (Cook and Urmi‐König, 1985; Di Nino, 2008).
Table 1

Characteristics of 24 microsatellite markers developed in Elodea nuttallii and cross‐species amplification in E. canadensis

LocusPrimer sequences (5′–3′)a Repeat motifFluorescent dyePCR mixFragment analysis mix E. nuttallii (N = 262)b E. canadensis (N = 92)b GenBank accession no.
Allele size range (bp) A A max P NA Allele size range (bp) A A max P NA
Enu01 F: CAGTCGGGCGTCATCAGGTGGAAGATGAGCCGTAAG (GA)7 NEDe4119110119110 MG272338
R: GTTTGTCGAGTAGGCACGTCGAA
Enu04 F: GGAAACAGCTATGACCATTAGGCTCTCATGCCTTTCC (TC)10 PETb1121–129430123–129311.1 MG272339
R: GTTTCGGTAGTCAGCAGTGGTGGT
Enu05 F: CAGTCGGGCGTCATCAGATCTGGACCCAAAGCGAA (TC)7 FAM393–128103093–116320 MG272340
R: GTTTCAGATAGAGTGGTCTTCGCCA
Enu06 F: GGAAACAGCTATGACCATCCTTCTTGCTAGGGAAGAATATC (TC)8 VIC2101–107320101–109530 MG272341
R: GTTTAGCCACTGCATCATGTCTTG
Enu07 F: CAGTCGGGCGTCATCAGGTAGGTAGTCGAACACCAACATA (CT)8 VICa1106–114430110–114330 MG272342
R: GTTTCATATGTACACCGAGATTGCAC
Enu09 F: GGAAACAGCTATGACCATCGAGTTGGCACAAGTAGGGT (TCT)9 VIC4108–126740108–129640 MG272343
R: GTTTCCTCCAAAGAAACGCAAATC
Enu10 F: CAGTCGGGCGTCATCAGAAGAGGTAGAACTCTACAATGAGGG (GAG)7 NEDd3106–118530.8109–118322.2 MG272344
R: GTTTGGTCAGCACATGTCTCCTTTT
Enu12 F: CAGTCGGGCGTCATCAGCTCTCCTCCCTTCTTGT (TTC)11 NEDc2104–128940104–119430 MG272345
R: GTTTGGGAAGACCCATACCTTGCT
Enu13 F: GGAAACAGCTATGACCATCTTTCCACCCAAGCCCTAC (CTT)9 VIC3108–135940111–135730 MG272346
R: GTTTGACAGTCCGATGGTGAAGGT
Enu15 F: CAGTCGGGCGTCATCAGAGGTGTAGGGCTCTCAGTT (TC)6 FAM4150–160330138–160320 MG272347
R: GTTTCTTTGGGGTCTAGGGAGGG
Enu19 F: CAGTCGGGCGTCATCATTACTAGCTTCGACACGCGA (GA)6 NEDc2155–162320.4155–1623291.3 MG272348
R: GTTTGGGAAGTGAGTTGAACGGAA
Enu20 F: GGAAACAGCTATGACCATAGCTTAGGGTTTGGTCCCAT (CT)6 PETd3156–164530156–1582189.1 MG272349
R: GTTTAAGCATAAAAGCGAAAGCCA
Enu21 F: CAGTCGGGCGTCATCAGCAACTGCTCGTTCTTCCAT (TC)6 NEDb1132–170731.5150–170434.4 MG272350
R: GTTTGAGGCTCTGGACTCCAATCA
Enu22 F: CAGTCGGGCGTCATCAGTCTCCTCCATTGATGCTCC (TCC)7 FAMf1141110141115.4 MG272351
R: GTTTCAAGAAAAGACCCCAAGGA
Enu24 F: CAGTCGGGCGTCATCACCACAGTTGGTCACTACTTCCA (CTT)9 VICa1160110160110 MG272352
R: GTTTGAAGCTGCAGAAGAAACAAACA
Enu26 F: CAGTCGGGCGTCATCATATGTTTGGGCGATGTTTGA (TTC)11 FAM2121–1491040121–146320 MG272353
R: GTTTGTCGAGTGGGGTCTAAGG
Enu28 F: CAGTCGGGCGTCATCAGTCACGATCCCCTTCTTCAA (TCT)6 NEDe4149–158333.8149–158324.4 MG272354
R: GTTTCCTTATGCAAAGGAGGAATCA
Enu30 F: GGAAACAGCTATGACCATGATCGGAGATGAGGGAATGA (GA)8 PETc2218–228323.42221197.8 MG272355
R: GTTTCGCCATAGGCACGATGAT
Enu35 F: CAGTCGGGCGTCATCAGAGTGAGGGATCGGGGATAG (GGA)6 FAMf1188–200420.4188–203430 MG272356
R: GTTTCTGCGACCATCCTACTGCTT
Enu36 F: GGAAACAGCTATGACCATAAACAACGAGAAGAAGCGGA (GAA)7 PETe4184–188221.1185111.1 MG272357
R: GTTTCGTAGCTCGTTCCATTTTCC
Enu37 F: CAGTCGGGCGTCATCACCATTTTCGTCCTTCTTCCA (TTC)11 VICa1185–216931.1185–1983291.3 MG272358
R: GTTTGACCTTCCTCCTTGGTG
Enu38 F: GGAAACAGCTATGACCATACGGACGTTGGACCTCTATG (AGT)15 PETb1180–219930183–216940 MG272359
R: GTTTGTGATTGCTCCTTTTGTGG
Enu39 F: CAGTCGGGCGTCATCACGATCGTCAGAGACCTCACA (CTT)10 NEDd3214–232743.0220–232530 MG272360
R: GTTTATCACGTGAAATGCCAGTCA
Enu41 F: CAGTCGGGCGTCATCAGCGAGCAACGAGATGAATTT (CTT)14 NEDb1230–257842.0223–254943.3 MG272361
R: GTTTAATTACATTGGCGCGGTATC

— = singleplex reaction; A = number of alleles; A max = maximal number of alleles detected per individual; N = number of individuals sampled; P NA = percentage homozygous null alleles.

Forward primer sequences include CAG and M13R tags and reverse primers include GTTT PIG‐tails (in italics).

Geographic coordinates for the populations and voucher information are given in Appendix 1.

Characteristics of 24 microsatellite markers developed in Elodea nuttallii and cross‐species amplification in E. canadensis — = singleplex reaction; A = number of alleles; A max = maximal number of alleles detected per individual; N = number of individuals sampled; P NA = percentage homozygous null alleles. Forward primer sequences include CAG and M13R tags and reverse primers include GTTT PIG‐tails (in italics). Geographic coordinates for the populations and voucher information are given in Appendix 1. The 41 primers were tested for polymorphism on 40 individuals from eastern Germany, and 24 loci yielded PCR products in the expected size range (Table 1). Sequences containing these primers were deposited in the National Center for Biotechnology Information's GenBank database. The 24 markers were amplified in six multiplex and six singleplex reactions (Table 1). In case no PCR product was detected, at least two replicate analyses were performed; if no PCR product was found in the replicate analyses, the presence of a fixed null allele was assumed. Because of clonal reproduction and invasive spread, single populations harbored only a small amount of total allelic variation. Therefore, to assess genetic variation at the population level, we analyzed two well‐sampled invasive populations for both E. nuttallii and E. canadensis. For these, we report the number of genotypes (N gt) and used GenoDive version 2.0b23 (Meirmans and Van Tienderen, 2004) to calculate values of observed heterozygosity (H o) and expected heterozygosity (H e) correcting for unknown allele dosage of polyploids. To assess allelic variation at the species level, we included additional samples from other native and invasive sites, totaling 262 ramets from 53 sites in E. nuttallii and 92 ramets from 30 sites in E. canadensis (Appendix 1). In E. nuttallii, 21 microsatellites were polymorphic, with the number of alleles ranging from two to 10 (average 5.3), totaling 127 alleles (Table 1). At population level, moderate levels of genetic diversity were found in two populations (mean H e = 0.350 and 0.376), but genotypic diversity was either very low (mean N gt = 1.04) or high (N gt = 3.67; Table 2).
Table 2

Genotypic and genetic variation of 24 newly developed microsatellites at population and overall level in two invasive populations each of Elodea nuttallii and E. canadensis.a

Locus E. nuttallii E. canadensis
Cospudener See (N = 21)Großer Goitzschesee (N = 43)Gravel pit Kleinpösna (N = 27)Parthe River (N = 11)
N gt H o H e N gt H o H e N gt H o H e N gt H o H e
Enu01100.000100.000100.000100.000
Enu04100.00040.0950.343100.000100.000
Enu05100.00030.0480.084100.000100.000
Enu06100.00020.0240.015200.074200.533
Enu07110.677110.506110.675110.690
Enu09110.677710.715100.000100.000
Enu10110.512210.506100.000100.000
Enu12110.677910.720110.509110.526
Enu13110.512310.570410.61420.80.490
Enu15110.51270.6670.616100.000100.000
Enu19100.00030.3570.385
Enu20110.51220.8570.485
Enu21110.51220.9760.505100.000100.000
Enu22100.000100.000100.000100.000
Enu24100.000100.000100.000100.000
Enu26110.7591210.796100.000100.000
Enu28100.000100.000110.509110.526
Enu30100.00020.0950.060
Enu35100.000100.000100.00020.80.490
Enu36110.51220.6190.378100.000100.000
Enu37110.51250.810.479
Enu38210.67740.9520.604110.675210.689
Enu39110.67750.9290.56320.1850.127310.608
Enu41110.67780.9290.688110.675110.690
Average1.040.5830.3503.670.5570.3761.250.3090.1931.300.380.262

— = no amplification; H e = expected heterozygosity corrected for allele dosage; H o = observed heterozygosity; N = number of individuals sampled; N gt = number of genotypes.

Geographic coordinates for the populations and voucher information are given in Appendix 1.

Genotypic and genetic variation of 24 newly developed microsatellites at population and overall level in two invasive populations each of Elodea nuttallii and E. canadensis.a — = no amplification; H e = expected heterozygosity corrected for allele dosage; H o = observed heterozygosity; N = number of individuals sampled; N gt = number of genotypes. Geographic coordinates for the populations and voucher information are given in Appendix 1. Cross‐species amplification in E. canadensis was successful, revealing 19 polymorphic loci with two to nine alleles per locus (average 3.6) and 87 alleles in total (Table 1). However, four loci had high null allele frequencies. At population level, low levels of both genetic diversity (mean H e = 0.193 and 0.262; Table 2) and genotypic diversity (mean N gt = 1.25 and 1.30) were found in two populations. In both species, the number of alleles detected per individual and locus ranged between one and four, as expected for a tetraploid species (Table 1).

CONCLUSIONS

The microsatellite markers developed for E. nuttallii were also proved to be useful in E. canadensis. Allelic diversity was generally higher in invasive populations of E. nuttallii compared to invasive populations of E. canadensis. This suggests that different processes may drive the invasion of these two morphologically and ecologically highly similar species. The new markers will be useful for further analysis of clonal diversity and genetic structure of E. nuttallii and E. canadensis and, in particular, to investigate their European invasion history.
SpeciesCountry, municipality/state, waterbodyGeographic coordinatesNo. of rametsVouchera
E. canadensis Michx.Germany, Bavaria, Chiemsee47°52′21″N, 12°27′36″E1EMT_41
E. canadensis Germany, Bavaria, Ferchensee47°26′19″N, 11°12′49″E1EMT_42
E. canadensis Germany, Bavaria, Froschhauser See47°41′13″N, 11°13′28″E1EMT_37
E. canadensis Germany, Bavaria, Moosach48°23′38″N, 11°43′27″E1EMT_38
E. canadensis Germany, Bavaria, Starnberge See47°54′45″N, 11°18′25″E1EMT_43
E. canadensis Germany, Lower Saxony, Hauptkanal52°53′20″N, 8°58′53″E1EMT_28
E. canadensis Germany, North Rhine‐Westphalia, Diersfordter Waldsee51°41′46″N, 6°31′54″E1EMT_70
E. canadensis Germany, North Rhine‐Westphalia, Tenderingsee51°35′43″N, 6°43′30″E1EMT_67
E. canadensis Germany, Saxony, Delinkateich51°24′25″N, 14°45′00″E1EMT_11
E. canadensis Germany, Saxony, gravel pit Kleinpösna51°18′43″N, 12°31′51″E27EMT_130
E. canadensis Germany, Saxony, Kleinliebenau51°22′01″N, 12°13′31″E1EMT_328
E. canadensis Germany, Saxony, Kulkwitzer See51°17′52″N, 12°15′14″E1EMT_51
E. canadensis Germany, Saxony, Cospudener See51°17′06″N, 12°21′38″E1EMT_323
E. canadensis Germany, Saxony, Leipzig51°19′41″N, 12°17′27″E2EMT_324
E. canadensis Germany, Saxony, Nangteich51°24′30″N, 14°45′01″E1EMT_329
E. canadensis Germany, Saxony, Parthe51°22′09″N, 12°24′47″E11EMT_266
E. canadensis Germany, Saxony‐Anhalt, Hasselvorsperre51°42′33″N, 10°49′51″E1EMT_50
E. canadensis Germany, Saxony‐Anhalt, Mulde51°40′51″N, 12°17′41″E2EMT_249
E. canadensis Germany, Saxony‐Anhalt, Raßnitzer See51°22′0″N, 12°4′41″E5EMT_87
E. canadensis Norway, Buskerud, Tyrifjorden59°57′51″N, 9°59′47″E1EMT_317
E. canadensis Austria, Salzkammergut, Grundlsee47°37′58″N, 13°51′52″E1EMT_39
E. canadensis Peru, Cusco, Oropesa−13°33′37″N, −71°51′40″E1EMT_338
E. canadensis Purchased online (Nymphaion)6EMT_347
E. canadensis Slovenia, Podravska, Ptujsko jezero46°23′14″N, 15°54′25″E1EMT_307
E. canadensis USA, Alaska, Alexander Lake61°44′38″N, −150°53′31″E1EMT_61
E. canadensis USA, Maryland, Conococheague Creek39°41′38″N, −77°48′34″E2EMT_308
E. canadensis USA, New York, Collins Lake42°49′38″N, −73°57′15″E6EMT_284
E. canadensis USA, New York, Lake Ontario43°18′43″N, −77°43′13″E9EMT_285
E. canadensis USA, New York, Niagara River43°06′26″N, −78°58′41″E1EMT_300
E. canadensis USA, Pennsylvania, Erie See42°07′41″N, −80°08′33″E1EMT_303
E. nuttallii (Planch.) H. St. JohnGermany, Baden‐Württemberg, Bodensee47°44′59″N, 9°07′54″E3EMT_359
E. nuttallii Germany, Baden‐Württemberg, Brigach47°59′51″N, 8°27′48″E1EMT_32
E. nuttallii Germany, Baden‐Württemberg, Donau47°54′57″N, 8°34′9″E2EMT_30
E. nuttallii Germany, Baden‐Württemberg, Kapuzinergraben48°17′26″N, 7°47′46″E3EMT_354
E. nuttallii Germany, Baden‐Württemberg, Rhein48°12′26″N, 7°39′31″E14EMT_356
E. nuttallii Germany, Bavaria, Chiemsee47°51′49″N, 12°24′58″E1EMT_40
E. nuttallii Germany, Bavaria, Ilm48°25′58″N, 11°23′55″E1EMT_35
E. nuttallii Germany, Bavaria, Kleine Vils48°29′8″N, 12°18′18″E1EMT_36
E. nuttallii Germany, Bavaria, Starnberge See47°54′53″N, 11°17′41″E3EMT_34
E. nuttallii Germany, Berlin, Tegeler See52°35′33″N, 13°15′44″E1EMT_274
E. nuttallii Germany, North Rhine‐Westphalia, Baldeneysee51°23′56″N, 7°02′56″E1EMT_208
E. nuttallii Germany, North Rhine‐Westphalia, Hürther Waldsee50°52′26″N, 6°50′36″E1EMT_64
E. nuttallii Germany, North Rhine‐Westphalia, Kemnader See51°25′20″N, 7°16′00″E4EMT_213
E. nuttallii Germany, North Rhine‐Westphalia, Lippe51°41′43″N, 7°50′28″E1EMT_254
E. nuttallii Germany, North Rhine‐Westphalia, Rotbach51°34′24″N, 6°47′40″E1EMT_237
E. nuttallii Germany, Rhineland‐Palatinate, Dreifelder Weiher50°35′27″N, 7°49′33″E1EMT_66
E. nuttallii Germany, Rhineland‐Palatinate, Laacher See50°24′48″N, 7°16′20″E1EMT_69
E. nuttallii Germany, Rhineland‐Palatinate, Rhein49°17′9″N, 8°27′21″E2EMT_65
E. nuttallii Germany, Rhineland‐Palatinate, Schäferweiher50°33′40″N, 7°44′01″E1EMT_68
E. nuttallii Germany, Saxony, Berzdorfer See51°06′13″N, 14°58′35″E1EMT_45
E. nuttallii Germany, Saxony, Chausseeteich51°24′38″N, 14°47′19″E2EMT_268
E. nuttallii Germany, Saxony, Cospudener See51°15′37″N, 12°20′19″E21EMT_252
E. nuttallii Germany, Saxony, gravel pit Kleinliebenau51°22′08″N, 12°11′59″E3EMT_337
E. nuttallii Germany, Saxony, gravel pit Kleinpösna51°18′35″N, 12°31′45″E23EMT_104
E. nuttallii Germany, Saxony, Heideteich51°24′36″N, 14°45′33″E2EMT_23
E. nuttallii Germany, Saxony, Leipzig51°15′45″N, 12°21′21″E2EMT_321
E. nuttallii Germany, Saxony, Mulde51°31′40″N, 12°36′28″E1EMT_275
E. nuttallii Germany, Saxony, Mylau50°37′12″N, 12°16′33″E1EMT_331
E. nuttallii Germany, Saxony, Parthe51°21′40″N, 12°24′28″E9EMT_266
E. nuttallii Germany, Saxony, Unterer Oberteich51°24′36″N, 14°47′17″E3EMT_21
E. nuttallii Germany, Saxony, Weiße Elster51°12′19″N, 12°18′16″E20EMT_234
E. nuttallii Germany, Saxony, Weiße Schöps51°22′57″N, 14°44′01″E1EMT_335
E. nuttallii Germany, Saxony, Winterteich51°23′16″N, 14°51′42″E1EMT_267
E. nuttallii Germany, Saxony, Zwenkauer See51°12′57″N, 12°21′15″E12EMT_261
E. nuttallii Germany, Saxony‐Anhalt, Elbe52°02′01″N, 1°52′39″E4EMT_256
E. nuttallii Germany, Saxony‐Anhalt, Großer Goitzschesee51°37′12″N, 12°23′59″E43EMT_185
E. nuttallii Germany, Saxony‐Anhalt, Mulde51°35′44″N, 12°30′03″E7EMT_204
E. nuttallii Germany, Saxony‐Anhalt, Muldestausee51°37′16″N, 12°25′01″E15EMT_201
E. nuttallii Germany, Saxony‐Anhalt, Raßnitzer See51°21′59″N, 12°4′59″E19EMT_76
E. nuttallii Germany, Saxony‐Anhalt, Saale51°34′52″N, 11°48′46″E1EMT_242
E. nuttallii Germany, Saxony‐Anhalt, Seelhausener See51°35′19″N, 12°26′27″E9EMT_56
E. nuttallii Peru, Cusco, Oropesa−13°33′37″N, −71°51′40″E1EMT_340
E. nuttallii Purchased online (Nymphaion)4EMT_343
E. nuttallii Slovenia, Podravska, Drava46°24′17″N, 16°08′59″E1EMT_306
E. nuttallii Slovenia, Oresje45°53′11″N, 15°16′07″E1EMT_305
E. nuttallii USA, Alaska, Potter Marsh61°03′47″N, −149°47′55″E1EMT_60
E. nuttallii USA, Maryland, Potomac River39°36′27″N, −77°58′08″E1EMT_310
E. nuttallii USA, New York, Collins Lake42°49′38″N, −73°57′15″E1EMT_284.2
E. nuttallii USA, New York, Lake Ontario43°21′22″N, −77°56′16″E1EMT_298
E. nuttallii USA, New York, Niagara River43°03′36″N, −78°58′41″E2EMT_301
E. nuttallii USA, Pennsylvania, Lake Erie42°07′41″N, −80°08′25″E1EMT_302
E. nuttallii USA, Pennsylvania, Quaker Lake41°58′39″N, −75°55′08″E2EMT_314
E. nuttallii USA, Virginia, Gunston Cove38°40′30″N, −77°09′20″E3EMT_311

Vouchers are deposited at the Helmholtz Centre for Environmental Research, Permoserstraße 15, 04318 Leipzig, Germany.

  7 in total

1.  An economic method for the fluorescent labeling of PCR fragments.

Authors:  M Schuelke
Journal:  Nat Biotechnol       Date:  2000-02       Impact factor: 54.908

2.  Range expansion of a selfing polyploid plant despite widespread genetic uniformity.

Authors:  Nicole Voss; R Lutz Eckstein; Walter Durka
Journal:  Ann Bot       Date:  2012-06-22       Impact factor: 4.357

3.  QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.

Authors:  Emese Meglécz; Caroline Costedoat; Vincent Dubut; André Gilles; Thibaut Malausa; Nicolas Pech; Jean-François Martin
Journal:  Bioinformatics       Date:  2009-12-10       Impact factor: 6.937

4.  High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries.

Authors:  Thibaut Malausa; André Gilles; Emese Meglécz; Hélène Blanquart; Stéphanie Duthoy; Caroline Costedoat; Vincent Dubut; Nicolas Pech; Philippe Castagnone-Sereno; Christophe Délye; Nicolas Feau; Pascal Frey; Philippe Gauthier; Thomas Guillemaud; Laurent Hazard; Valérie Le Corre; Brigitte Lung-Escarmant; Pierre-Jean G Malé; Stéphanie Ferreira; Jean-François Martin
Journal:  Mol Ecol Resour       Date:  2011-02-21       Impact factor: 7.090

5.  Molecular evidence for multiple introductions of garlic mustard (Alliaria petiolata, Brassicaceae) to North America.

Authors:  Walter Durka; Oliver Bossdorf; Daniel Prati; Harald Auge
Journal:  Mol Ecol       Date:  2005-05       Impact factor: 6.185

6.  Modulation of non-templated nucleotide addition by Taq DNA polymerase: primer modifications that facilitate genotyping.

Authors:  M J Brownstein; J D Carpten; J R Smith
Journal:  Biotechniques       Date:  1996-06       Impact factor: 1.993

7.  Development and characterization of simple sequence repeat markers for the invasive tetraploid waterweed Elodea nuttallii (Hydrocharitaceae).

Authors:  Isabell Weickardt; Andreas Zehnsdorf; Walter Durka
Journal:  Appl Plant Sci       Date:  2018-05-09       Impact factor: 1.936

  7 in total
  1 in total

1.  Development and characterization of simple sequence repeat markers for the invasive tetraploid waterweed Elodea nuttallii (Hydrocharitaceae).

Authors:  Isabell Weickardt; Andreas Zehnsdorf; Walter Durka
Journal:  Appl Plant Sci       Date:  2018-05-09       Impact factor: 1.936

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.