Literature DB >> 30127404

Ancient DNA from Chalcolithic Israel reveals the role of population mixture in cultural transformation.

Éadaoin Harney1,2,3, Hila May4,5, Dina Shalem6, Nadin Rohland7, Swapan Mallick7,8,9, Iosif Lazaridis7,10, Rachel Sarig11,12, Kristin Stewardson7,9, Susanne Nordenfelt7,9, Nick Patterson8,9, Israel Hershkovitz13,11, David Reich7,10,8,9.   

Abstract

The material culture of the Late Chalcolithic period in the southern Levant (4500-3900/3800 BCE) is qualitatively distinct from previous and subsequent periods. Here, to test the hypothesis that the advent and decline of this culture was influenced by movements of people, we generated genome-wide ancient DNA from 22 individuals from Peqi'in Cave, Israel. These individuals were part of a homogeneous population that can be modeled as deriving ~57% of its ancestry from groups related to those of the local Levant Neolithic, ~17% from groups related to those of the Iran Chalcolithic, and ~26% from groups related to those of the Anatolian Neolithic. The Peqi'in population also appears to have contributed differently to later Bronze Age groups, one of which we show cannot plausibly have descended from the same population as that of Peqi'in Cave. These results provide an example of how population movements propelled cultural changes in the deep past.

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Year:  2018        PMID: 30127404      PMCID: PMC6102297          DOI: 10.1038/s41467-018-05649-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  34 in total

1.  A "Copernican" reassessment of the human mitochondrial DNA tree from its root.

Authors:  Doron M Behar; Mannis van Oven; Saharon Rosset; Mait Metspalu; Eva-Liis Loogväli; Nuno M Silva; Toomas Kivisild; Antonio Torroni; Richard Villems
Journal:  Am J Hum Genet       Date:  2012-04-06       Impact factor: 11.025

2.  Increased resolution of Y chromosome haplogroup T defines relationships among populations of the Near East, Europe, and Africa.

Authors:  Fernando L Mendez; Tatiana M Karafet; Thomas Krahn; Harry Ostrer; Himla Soodyall; Michael F Hammer
Journal:  Hum Biol       Date:  2011-02       Impact factor: 0.553

3.  Partial uracil-DNA-glycosylase treatment for screening of ancient DNA.

Authors:  Nadin Rohland; Eadaoin Harney; Swapan Mallick; Susanne Nordenfelt; David Reich
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-01-19       Impact factor: 6.237

4.  Early Neolithic genomes from the eastern Fertile Crescent.

Authors:  Daniel Wegmann; Garrett Hellenthal; Joachim Burger; Farnaz Broushaki; Mark G Thomas; Vivian Link; Saioa López; Lucy van Dorp; Karola Kirsanow; Zuzana Hofmanová; Yoan Diekmann; Lara M Cassidy; David Díez-Del-Molino; Athanasios Kousathanas; Christian Sell; Harry K Robson; Rui Martiniano; Jens Blöcher; Amelie Scheu; Susanne Kreutzer; Ruth Bollongino; Dean Bobo; Hossein Davudi; Olivia Munoz; Mathias Currat; Kamyar Abdi; Fereidoun Biglari; Oliver E Craig; Daniel G Bradley; Stephen Shennan; Krishna Veeramah; Marjan Mashkour
Journal:  Science       Date:  2016-07-14       Impact factor: 47.728

5.  Population structure and eigenanalysis.

Authors:  Nick Patterson; Alkes L Price; David Reich
Journal:  PLoS Genet       Date:  2006-12       Impact factor: 5.917

6.  ANGSD: Analysis of Next Generation Sequencing Data.

Authors:  Thorfinn Sand Korneliussen; Anders Albrechtsen; Rasmus Nielsen
Journal:  BMC Bioinformatics       Date:  2014-11-25       Impact factor: 3.169

7.  HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing.

Authors:  Hansi Weissensteiner; Dominic Pacher; Anita Kloss-Brandstätter; Lukas Forer; Günther Specht; Hans-Jürgen Bandelt; Florian Kronenberg; Antonio Salas; Sebastian Schönherr
Journal:  Nucleic Acids Res       Date:  2016-04-15       Impact factor: 16.971

8.  A global reference for human genetic variation.

Authors:  Adam Auton; Lisa D Brooks; Richard M Durbin; Erik P Garrison; Hyun Min Kang; Jan O Korbel; Jonathan L Marchini; Shane McCarthy; Gil A McVean; Gonçalo R Abecasis
Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

9.  The Earliest Lead Object in the Levant.

Authors:  Naama Yahalom-Mack; Dafna Langgut; Omri Dvir; Ofir Tirosh; Adi Eliyahu-Behar; Yigal Erel; Boaz Langford; Amos Frumkin; Mika Ullman; Uri Davidovich
Journal:  PLoS One       Date:  2015-12-02       Impact factor: 3.240

10.  Genome-wide patterns of selection in 230 ancient Eurasians.

Authors:  Iain Mathieson; Iosif Lazaridis; Nadin Rohland; Swapan Mallick; Nick Patterson; Songül Alpaslan Roodenberg; Eadaoin Harney; Kristin Stewardson; Daniel Fernandes; Mario Novak; Kendra Sirak; Cristina Gamba; Eppie R Jones; Bastien Llamas; Stanislav Dryomov; Joseph Pickrell; Juan Luís Arsuaga; José María Bermúdez de Castro; Eudald Carbonell; Fokke Gerritsen; Aleksandr Khokhlov; Pavel Kuznetsov; Marina Lozano; Harald Meller; Oleg Mochalov; Vyacheslav Moiseyev; Manuel A Rojo Guerra; Jacob Roodenberg; Josep Maria Vergès; Johannes Krause; Alan Cooper; Kurt W Alt; Dorcas Brown; David Anthony; Carles Lalueza-Fox; Wolfgang Haak; Ron Pinhasi; David Reich
Journal:  Nature       Date:  2015-11-23       Impact factor: 49.962

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  19 in total

1.  Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa.

Authors:  Mary E Prendergast; Mark Lipson; Elizabeth A Sawchuk; Iñigo Olalde; Christine A Ogola; Nadin Rohland; Kendra A Sirak; Nicole Adamski; Rebecca Bernardos; Nasreen Broomandkhoshbacht; Kimberly Callan; Brendan J Culleton; Laurie Eccles; Thomas K Harper; Ann Marie Lawson; Matthew Mah; Jonas Oppenheimer; Kristin Stewardson; Fatma Zalzala; Stanley H Ambrose; George Ayodo; Henry Louis Gates; Agness O Gidna; Maggie Katongo; Amandus Kwekason; Audax Z P Mabulla; George S Mudenda; Emmanuel K Ndiema; Charles Nelson; Peter Robertshaw; Douglas J Kennett; Fredrick K Manthi; David Reich
Journal:  Science       Date:  2019-05-30       Impact factor: 47.728

2.  Dairying, diseases and the evolution of lactase persistence in Europe.

Authors:  Richard P Evershed; George Davey Smith; Mélanie Roffet-Salque; Adrian Timpson; Yoan Diekmann; Matthew S Lyon; Lucy J E Cramp; Emmanuelle Casanova; Jessica Smyth; Helen L Whelton; Julie Dunne; Veronika Brychova; Lucija Šoberl; Pascale Gerbault; Rosalind E Gillis; Volker Heyd; Emily Johnson; Iain Kendall; Katie Manning; Arkadiusz Marciniak; Alan K Outram; Jean-Denis Vigne; Stephen Shennan; Andrew Bevan; Sue Colledge; Lyndsay Allason-Jones; Luc Amkreutz; Alexandra Anders; Rose-Marie Arbogast; Adrian Bălăşescu; Eszter Bánffy; Alistair Barclay; Anja Behrens; Peter Bogucki; Ángel Carrancho Alonso; José Miguel Carretero; Nigel Cavanagh; Erich Claßen; Hipolito Collado Giraldo; Matthias Conrad; Piroska Csengeri; Lech Czerniak; Maciej Dębiec; Anthony Denaire; László Domboróczki; Christina Donald; Julia Ebert; Christopher Evans; Marta Francés-Negro; Detlef Gronenborn; Fabian Haack; Matthias Halle; Caroline Hamon; Roman Hülshoff; Michael Ilett; Eneko Iriarte; János Jakucs; Christian Jeunesse; Melanie Johnson; Andy M Jones; Necmi Karul; Dmytro Kiosak; Nadezhda Kotova; Rüdiger Krause; Saskia Kretschmer; Marta Krüger; Philippe Lefranc; Olivia Lelong; Eva Lenneis; Andrey Logvin; Friedrich Lüth; Tibor Marton; Jane Marley; Richard Mortimer; Luiz Oosterbeek; Krisztián Oross; Juraj Pavúk; Joachim Pechtl; Pierre Pétrequin; Joshua Pollard; Richard Pollard; Dominic Powlesland; Joanna Pyzel; Pál Raczky; Andrew Richardson; Peter Rowe; Stephen Rowland; Ian Rowlandson; Thomas Saile; Katalin Sebők; Wolfram Schier; Germo Schmalfuß; Svetlana Sharapova; Helen Sharp; Alison Sheridan; Irina Shevnina; Iwona Sobkowiak-Tabaka; Peter Stadler; Harald Stäuble; Astrid Stobbe; Darko Stojanovski; Nenad Tasić; Ivo van Wijk; Ivana Vostrovská; Jasna Vuković; Sabine Wolfram; Andrea Zeeb-Lanz; Mark G Thomas
Journal:  Nature       Date:  2022-07-27       Impact factor: 69.504

3.  Ancient Maltese genomes and the genetic geography of Neolithic Europe.

Authors:  Bruno Ariano; Valeria Mattiangeli; Emily M Breslin; Eóin W Parkinson; T Rowan McLaughlin; Jess E Thompson; Ronika K Power; Jay T Stock; Bernardette Mercieca-Spiteri; Simon Stoddart; Caroline Malone; Shyam Gopalakrishnan; Lara M Cassidy; Daniel G Bradley
Journal:  Curr Biol       Date:  2022-05-18       Impact factor: 10.900

4.  A Dynamic 6,000-Year Genetic History of Eurasia's Eastern Steppe.

Authors:  Choongwon Jeong; Ke Wang; Shevan Wilkin; William Timothy Treal Taylor; Bryan K Miller; Jan H Bemmann; Raphaela Stahl; Chelsea Chiovelli; Florian Knolle; Sodnom Ulziibayar; Dorjpurev Khatanbaatar; Diimaajav Erdenebaatar; Ulambayar Erdenebat; Ayudai Ochir; Ganbold Ankhsanaa; Chuluunkhuu Vanchigdash; Battuga Ochir; Chuluunbat Munkhbayar; Dashzeveg Tumen; Alexey Kovalev; Nikolay Kradin; Bilikto A Bazarov; Denis A Miyagashev; Prokopiy B Konovalov; Elena Zhambaltarova; Alicia Ventresca Miller; Wolfgang Haak; Stephan Schiffels; Johannes Krause; Nicole Boivin; Myagmar Erdene; Jessica Hendy; Christina Warinner
Journal:  Cell       Date:  2020-11-05       Impact factor: 41.582

5.  Hunter-gatherer genomes reveal diverse demographic trajectories during the rise of farming in Eastern Africa.

Authors:  Shyamalika Gopalan; Richard E W Berl; Justin W Myrick; Zachary H Garfield; Austin W Reynolds; Barnabas K Bafens; Gillian Belbin; Mira Mastoras; Cole Williams; Michelle Daya; Akmel N Negash; Marcus W Feldman; Barry S Hewlett; Brenna M Henn
Journal:  Curr Biol       Date:  2022-03-09       Impact factor: 10.900

6.  Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa.

Authors:  Ke Wang; Steven Goldstein; Madeleine Bleasdale; Bernard Clist; Koen Bostoen; Paul Bakwa-Lufu; Laura T Buck; Alison Crowther; Alioune Dème; Roderick J McIntosh; Julio Mercader; Christine Ogola; Robert C Power; Elizabeth Sawchuk; Peter Robertshaw; Edwin N Wilmsen; Michael Petraglia; Emmanuel Ndiema; Fredrick K Manthi; Johannes Krause; Patrick Roberts; Nicole Boivin; Stephan Schiffels
Journal:  Sci Adv       Date:  2020-06-12       Impact factor: 14.136

7.  Changes in human mandibular shape during the Terminal Pleistocene-Holocene Levant.

Authors:  Ariel Pokhojaev; Hadas Avni; Tatiana Sella-Tunis; Rachel Sarig; Hila May
Journal:  Sci Rep       Date:  2019-06-19       Impact factor: 4.379

8.  Ancient human mitochondrial genomes from Bronze Age Bulgaria: new insights into the genetic history of Thracians.

Authors:  Alessandra Modi; Desislava Nesheva; Stefania Sarno; Stefania Vai; Sena Karachanak-Yankova; Donata Luiselli; Elena Pilli; Martina Lari; Chiara Vergata; Yordan Yordanov; Diana Dimitrova; Petar Kalcev; Rada Staneva; Olga Antonova; Savina Hadjidekova; Angel Galabov; Draga Toncheva; David Caramelli
Journal:  Sci Rep       Date:  2019-04-01       Impact factor: 4.379

9.  Ancient DNA sheds light on the genetic origins of early Iron Age Philistines.

Authors:  Michal Feldman; Daniel M Master; Raffaela A Bianco; Marta Burri; Philipp W Stockhammer; Alissa Mittnik; Adam J Aja; Choongwon Jeong; Johannes Krause
Journal:  Sci Adv       Date:  2019-07-03       Impact factor: 14.136

10.  Human mobility at Tell Atchana (Alalakh), Hatay, Turkey during the 2nd millennium BC: Integration of isotopic and genomic evidence.

Authors:  Tara Ingman; Stefanie Eisenmann; Eirini Skourtanioti; Murat Akar; Jana Ilgner; Guido Alberto Gnecchi Ruscone; Petrus le Roux; Rula Shafiq; Gunnar U Neumann; Marcel Keller; Cäcilia Freund; Sara Marzo; Mary Lucas; Johannes Krause; Patrick Roberts; K Aslıhan Yener; Philipp W Stockhammer
Journal:  PLoS One       Date:  2021-06-30       Impact factor: 3.240

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