Literature DB >> 31147405

Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa.

Mary E Prendergast1,2, Mark Lipson3, Elizabeth A Sawchuk4, Iñigo Olalde2, Christine A Ogola5, Nadin Rohland2, Kendra A Sirak2, Nicole Adamski2,6, Rebecca Bernardos2, Nasreen Broomandkhoshbacht2,6, Kimberly Callan2,6, Brendan J Culleton7, Laurie Eccles8, Thomas K Harper8, Ann Marie Lawson2,6, Matthew Mah2,6,9, Jonas Oppenheimer2,6, Kristin Stewardson2,6, Fatma Zalzala2,6, Stanley H Ambrose10, George Ayodo11, Henry Louis Gates12, Agness O Gidna13, Maggie Katongo14, Amandus Kwekason13, Audax Z P Mabulla13, George S Mudenda14, Emmanuel K Ndiema5, Charles Nelson15, Peter Robertshaw16, Douglas J Kennett17, Fredrick K Manthi5, David Reich3,6,9.   

Abstract

How food production first entered eastern Africa ~5000 years ago and the extent to which people moved with livestock is unclear. We present genome-wide data from 41 individuals associated with Later Stone Age, Pastoral Neolithic (PN), and Iron Age contexts in what are now Kenya and Tanzania to examine the genetic impacts of the spreads of herding and farming. Our results support a multiphase model in which admixture between northeastern African-related peoples and eastern African foragers formed multiple pastoralist groups, including a genetically homogeneous PN cluster. Additional admixture with northeastern and western African-related groups occurred by the Iron Age. These findings support several movements of food producers while rejecting models of minimal admixture with foragers and of genetic differentiation between makers of distinct PN artifacts.
Copyright © 2019 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2019        PMID: 31147405      PMCID: PMC6827346          DOI: 10.1126/science.aaw6275

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  49 in total

1.  Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments.

Authors:  Jesse Dabney; Michael Knapp; Isabelle Glocke; Marie-Theres Gansauge; Antje Weihmann; Birgit Nickel; Cristina Valdiosera; Nuria García; Svante Pääbo; Juan-Luis Arsuaga; Matthias Meyer
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-09       Impact factor: 11.205

2.  Solid-phase reversible immobilization for the isolation of PCR products.

Authors:  M M DeAngelis; D G Wang; T L Hawkins
Journal:  Nucleic Acids Res       Date:  1995-11-25       Impact factor: 16.971

3.  Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations.

Authors:  Marieke van de Loosdrecht; Abdeljalil Bouzouggar; Louise Humphrey; Cosimo Posth; Nick Barton; Ayinuer Aximu-Petri; Birgit Nickel; Sarah Nagel; El Hassan Talbi; Mohammed Abdeljalil El Hajraoui; Saaïd Amzazi; Jean-Jacques Hublin; Svante Pääbo; Stephan Schiffels; Matthias Meyer; Wolfgang Haak; Choongwon Jeong; Johannes Krause
Journal:  Science       Date:  2018-03-15       Impact factor: 47.728

4.  The genetic structure and history of Africans and African Americans.

Authors:  Sarah A Tishkoff; Floyd A Reed; Françoise R Friedlaender; Christopher Ehret; Alessia Ranciaro; Alain Froment; Jibril B Hirbo; Agnes A Awomoyi; Jean-Marie Bodo; Ogobara Doumbo; Muntaser Ibrahim; Abdalla T Juma; Maritha J Kotze; Godfrey Lema; Jason H Moore; Holly Mortensen; Thomas B Nyambo; Sabah A Omar; Kweli Powell; Gideon S Pretorius; Michael W Smith; Mahamadou A Thera; Charles Wambebe; James L Weber; Scott M Williams
Journal:  Science       Date:  2009-04-30       Impact factor: 47.728

5.  Inferring admixture histories of human populations using linkage disequilibrium.

Authors:  Po-Ru Loh; Mark Lipson; Nick Patterson; Priya Moorjani; Joseph K Pickrell; David Reich; Bonnie Berger
Journal:  Genetics       Date:  2013-02-14       Impact factor: 4.562

6.  Ancient human genomes suggest three ancestral populations for present-day Europeans.

Authors:  Iosif Lazaridis; Nick Patterson; Alissa Mittnik; Gabriel Renaud; Swapan Mallick; Karola Kirsanow; Peter H Sudmant; Joshua G Schraiber; Sergi Castellano; Mark Lipson; Bonnie Berger; Christos Economou; Ruth Bollongino; Qiaomei Fu; Kirsten I Bos; Susanne Nordenfelt; Heng Li; Cesare de Filippo; Kay Prüfer; Susanna Sawyer; Cosimo Posth; Wolfgang Haak; Fredrik Hallgren; Elin Fornander; Nadin Rohland; Dominique Delsate; Michael Francken; Jean-Michel Guinet; Joachim Wahl; George Ayodo; Hamza A Babiker; Graciela Bailliet; Elena Balanovska; Oleg Balanovsky; Ramiro Barrantes; Gabriel Bedoya; Haim Ben-Ami; Judit Bene; Fouad Berrada; Claudio M Bravi; Francesca Brisighelli; George B J Busby; Francesco Cali; Mikhail Churnosov; David E C Cole; Daniel Corach; Larissa Damba; George van Driem; Stanislav Dryomov; Jean-Michel Dugoujon; Sardana A Fedorova; Irene Gallego Romero; Marina Gubina; Michael Hammer; Brenna M Henn; Tor Hervig; Ugur Hodoglugil; Aashish R Jha; Sena Karachanak-Yankova; Rita Khusainova; Elza Khusnutdinova; Rick Kittles; Toomas Kivisild; William Klitz; Vaidutis Kučinskas; Alena Kushniarevich; Leila Laredj; Sergey Litvinov; Theologos Loukidis; Robert W Mahley; Béla Melegh; Ene Metspalu; Julio Molina; Joanna Mountain; Klemetti Näkkäläjärvi; Desislava Nesheva; Thomas Nyambo; Ludmila Osipova; Jüri Parik; Fedor Platonov; Olga Posukh; Valentino Romano; Francisco Rothhammer; Igor Rudan; Ruslan Ruizbakiev; Hovhannes Sahakyan; Antti Sajantila; Antonio Salas; Elena B Starikovskaya; Ayele Tarekegn; Draga Toncheva; Shahlo Turdikulova; Ingrida Uktveryte; Olga Utevska; René Vasquez; Mercedes Villena; Mikhail Voevoda; Cheryl A Winkler; Levon Yepiskoposyan; Pierre Zalloua; Tatijana Zemunik; Alan Cooper; Cristian Capelli; Mark G Thomas; Andres Ruiz-Linares; Sarah A Tishkoff; Lalji Singh; Kumarasamy Thangaraj; Richard Villems; David Comas; Rem Sukernik; Mait Metspalu; Matthias Meyer; Evan E Eichler; Joachim Burger; Montgomery Slatkin; Svante Pääbo; Janet Kelso; David Reich; Johannes Krause
Journal:  Nature       Date:  2014-09-18       Impact factor: 49.962

7.  Genetic origins of the Minoans and Mycenaeans.

Authors:  Iosif Lazaridis; Alissa Mittnik; Nick Patterson; Swapan Mallick; Nadin Rohland; Saskia Pfrengle; Anja Furtwängler; Alexander Peltzer; Cosimo Posth; Andonis Vasilakis; P J P McGeorge; Eleni Konsolaki-Yannopoulou; George Korres; Holley Martlew; Manolis Michalodimitrakis; Mehmet Özsait; Nesrin Özsait; Anastasia Papathanasiou; Michael Richards; Songül Alpaslan Roodenberg; Yannis Tzedakis; Robert Arnott; Daniel M Fernandes; Jeffery R Hughey; Dimitra M Lotakis; Patrick A Navas; Yannis Maniatis; John A Stamatoyannopoulos; Kristin Stewardson; Philipp Stockhammer; Ron Pinhasi; David Reich; Johannes Krause; George Stamatoyannopoulos
Journal:  Nature       Date:  2017-08-02       Impact factor: 49.962

8.  Single-stranded DNA library preparation from highly degraded DNA using T4 DNA ligase.

Authors:  Marie-Theres Gansauge; Tobias Gerber; Isabelle Glocke; Petra Korlevic; Laurin Lippik; Sarah Nagel; Lara Maria Riehl; Anna Schmidt; Matthias Meyer
Journal:  Nucleic Acids Res       Date:  2017-06-02       Impact factor: 16.971

9.  Archaeogenomic evidence reveals prehistoric matrilineal dynasty.

Authors:  Douglas J Kennett; Stephen Plog; Richard J George; Brendan J Culleton; Adam S Watson; Pontus Skoglund; Nadin Rohland; Swapan Mallick; Kristin Stewardson; Logan Kistler; Steven A LeBlanc; Peter M Whiteley; David Reich; George H Perry
Journal:  Nat Commun       Date:  2017-02-21       Impact factor: 14.919

10.  Fast and accurate short read alignment with Burrows-Wheeler transform.

Authors:  Heng Li; Richard Durbin
Journal:  Bioinformatics       Date:  2009-05-18       Impact factor: 6.937

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  19 in total

1.  Ancient DNA illuminates how humans travelled and interacted in Stone Age Africa.

Authors: 
Journal:  Nature       Date:  2022-02-23       Impact factor: 49.962

Review 2.  The deep population history in Africa.

Authors:  Nina Hollfelder; Gwenna Breton; Per Sjödin; Mattias Jakobsson
Journal:  Hum Mol Genet       Date:  2021-04-26       Impact factor: 6.150

3.  Hunter-gatherer genomes reveal diverse demographic trajectories during the rise of farming in Eastern Africa.

Authors:  Shyamalika Gopalan; Richard E W Berl; Justin W Myrick; Zachary H Garfield; Austin W Reynolds; Barnabas K Bafens; Gillian Belbin; Mira Mastoras; Cole Williams; Michelle Daya; Akmel N Negash; Marcus W Feldman; Barry S Hewlett; Brenna M Henn
Journal:  Curr Biol       Date:  2022-03-09       Impact factor: 10.900

4.  Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa.

Authors:  Ke Wang; Steven Goldstein; Madeleine Bleasdale; Bernard Clist; Koen Bostoen; Paul Bakwa-Lufu; Laura T Buck; Alison Crowther; Alioune Dème; Roderick J McIntosh; Julio Mercader; Christine Ogola; Robert C Power; Elizabeth Sawchuk; Peter Robertshaw; Edwin N Wilmsen; Michael Petraglia; Emmanuel Ndiema; Fredrick K Manthi; Johannes Krause; Patrick Roberts; Nicole Boivin; Stephan Schiffels
Journal:  Sci Adv       Date:  2020-06-12       Impact factor: 14.136

5.  Ostrich eggshell bead diameter in the Holocene: Regional variation with the spread of herding in eastern and southern Africa.

Authors:  Jennifer M Miller; Elizabeth A Sawchuk
Journal:  PLoS One       Date:  2019-11-27       Impact factor: 3.240

6.  A Genetic History of the Near East from an aDNA Time Course Sampling Eight Points in the Past 4,000 Years.

Authors:  Marc Haber; Joyce Nassar; Mohamed A Almarri; Tina Saupe; Lehti Saag; Samuel J Griffith; Claude Doumet-Serhal; Julien Chanteau; Muntaha Saghieh-Beydoun; Yali Xue; Christiana L Scheib; Chris Tyler-Smith
Journal:  Am J Hum Genet       Date:  2020-05-28       Impact factor: 11.025

Review 7.  Structure and ancestry patterns of Ethiopians in genome-wide autosomal DNA.

Authors:  Garrett Hellenthal; Nancy Bird; Sam Morris
Journal:  Hum Mol Genet       Date:  2021-04-26       Impact factor: 6.150

Review 8.  Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics.

Authors:  Gillian P McHugo; Michael J Dover; David E MacHugh
Journal:  BMC Biol       Date:  2019-12-02       Impact factor: 7.431

9.  Human auditory ossicles as an alternative optimal source of ancient DNA.

Authors:  Kendra Sirak; Daniel Fernandes; Olivia Cheronet; Eadaoin Harney; Matthew Mah; Swapan Mallick; Nadin Rohland; Nicole Adamski; Nasreen Broomandkhoshbacht; Kimberly Callan; Francesca Candilio; Ann Marie Lawson; Kirsten Mandl; Jonas Oppenheimer; Kristin Stewardson; Fatma Zalzala; Alexandra Anders; Juraj Bartík; Alfredo Coppa; Tumen Dashtseveg; Sándor Évinger; Zdeněk Farkaš; Tamás Hajdu; Jamsranjav Bayarsaikhan; Lauren McIntyre; Vyacheslav Moiseyev; Mercedes Okumura; Ildikó Pap; Michael Pietrusewsky; Pál Raczky; Alena Šefčáková; Andrei Soficaru; Tamás Szeniczey; Béla Miklós Szőke; Dennis Van Gerven; Sergey Vasilyev; Lynne Bell; David Reich; Ron Pinhasi
Journal:  Genome Res       Date:  2020-02-25       Impact factor: 9.043

10.  West Asian sources of the Eurasian component in Ethiopians: a reassessment.

Authors:  Ludovica Molinaro; Francesco Montinaro; Burak Yelmen; Davide Marnetto; Doron M Behar; Toomas Kivisild; Luca Pagani
Journal:  Sci Rep       Date:  2019-12-11       Impact factor: 4.379

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