Literature DB >> 30123346

Polymorphisms in ERCC2 and ERCC5 and Risk of Prostate Cancer: A Meta-Analysis and Systematic Review.

Yi Liu1,2, Yonghui Hu3, Meng Zhang1,2, Runze Jiang4, Chaozhao Liang1,2.   

Abstract

Background and Objective: Excision repair cross complementing (ERCC) group genes play important roles in the nucleotide excision repair (NER) way, which can effectively remove bulky lesions and reduce UV-caused DNA damage by environmental chemicals. Polymorphisms in ERCCs were thought to be related to prostate cancer (PCa) risk. However, it has been unclear whether this relationship is consistent. This study aimed to obtain the overall profile regarding the associations between ERCCs polymorphisms and PCa risk. Materials and
Methods: We identified relevant studies by a systematic search of PubMed, Medline, Embase, Google Scholar databases, Web of Science and Wanfang databases up to April 8, 2018. Odds ratios (ORs) with 95% confidential intervals (95%CIs) were conducted to evaluate the associations. All the statistical analyses were conducted basing on STATA 12.0 software.
Results: Finally, a total of 29 previous studies published in 17 publications were included for four polymorphisms in two DNA repair genes (ERCC2-rs1799793, ERCC2-rs238406, ERCC2-rs13181 and ERCC5-rs17655). Overall, we observed no significant connection between these four polymorphisms and PCa risk. However, after stratifying the studies by ethnicity, ERCC2-rs1799793 polymorphism was associated with an increased risk of PCa in Asian patients and the relationship was subsequently validated with the allelic model, the homozygous model and the recessive model when extracting the data of Asian patients for specific analyses (B vs. A: OR = 1.537, 95%CI: 1.240-1.906, PA< 0.001; BB vs. AA: OR = 2.089, 95%CI: 1.388-3.145, PA< 0.001 and BB vs. BA + AA: OR = 1.929, 95%CI: 1.313-2.835, PA= 0.020). Furthermore, subgroup analyses were also conducted by Hardy-Weinberg Equilibrium (HWE) and source of control, negative results were identified for ERCC2-rs238406, ERCC2-rs13181 and ERCC5-rs17655 polymorphisms (PA> 0.050).
Conclusion: To sum up, our work demonstrated that ERCC2-rs1799793 polymorphism is positively associated with PCa risk in Asian population. Further larger-scale studies with subjects of the same ethnicity and biological characteristics are required to verify these findings.

Entities:  

Keywords:  Excision repair cross complementing (ERCC); prostate cancer(Pca); risk; single nucleotide polymorphism (SNP)

Year:  2018        PMID: 30123346      PMCID: PMC6096373          DOI: 10.7150/jca.25356

Source DB:  PubMed          Journal:  J Cancer        ISSN: 1837-9664            Impact factor:   4.207


Introduction

Prostate cancer (PCa) is one of the most common malignant tumors among males worldwide. Approximately 180,890 new diagnosed patients and 26,120 deaths are informed per year according to cancer statistics, 20161. A variety of risk factors such as hormones, family history and lifestyle are related to PCa. In addition, various DNA damages caused by the exposure to environmental carcinogens could also subsequently result in PCa, if left unrepaired. To ensure genome integrity, mankind has developed advanced DNA repair mechanism in response to the insults of carcinogens during the evolution. DNA repair mechanism is a complicated biological system composed of many different pathways. A growing body of studies had uncovered the existence of the critical relationship between individuals' ability to maintain DNA stability and tumorigenesis, progression, and therapeutic responses2. Nucleotide excision repair (NER) is one of the important DNA repair mechanisms, which neutralizes the consequences of mutagenic exposure of cells3. The NER pathway consists of many proteins involved in DNA damage recognition and incision. ERCC group genes are key factors in DNA transcription and the NER pathway, and are also believed to be important in DNA repair system. It has been demonstrated that these genes are critical for genetic stability, and defects in these genes are more likely to develop cancer and present poor cancer prognosis. For example, ERCC1 gene is a key rate-limiting enzyme acting in the NER process and ERCC5 encodes a structure-specific endonuclease catalyzing 3' incision and involving the subsequent 5' incision by ERCC1 heterodimer4, 5. ERCC2 participated in DNA unwinding and was important to structurally identify the irrelevant DNA lesions, such as large adducts and thymidine dimmers6. Therefore, variants in the ERCC group could result in defects of DNA repair abilities, genomic instability, and the failure to regulate genetic transcription7, 8, which might give rise to a higher susceptibility to carcinogenesis. To date, many studies have explored the relationship between polymorphisms in ERCC genes and PCa risk9-11. However, the results remain conflicting instead of conclusive because of the clinical heterogeneity, diverse ethnic populations and relatively small sample size in previous published studies. In addition, individual research might have insufficient power to detect a slight effect of polymorphisms on the risk of PCa. To overcome these limitations, we performed currently updated meta-analysis to further elucidate the connection of all available polymorphisms of ERCC genes and the PCa risk.

Materials and Methods

Literature screening and identification of relevant studies

We performed the complete literature search on electronic databases of PubMed, Medline, Embase, Google Scholar, Web of Science and Wanfang databases published up to March 27, 2018 to collect eligible articles on the relationship between ERCC genes polymorphisms and PCa risk by applying below MeSH terms: “xeroderma pigmentosum group OR excision repair cross complementing group 1-10 OR ERCC1-10” AND “ prostate cancer OR prostate carcinoma OR prostate tumor OR prostate malignancy OR prostate neoplasms OR prostate adenocarcinoma” AND “polymorphism OR mutation OR variant OR SNP OR genotype”. The language of eligible studies was limited to English. We reviewed all retrieved articles by reading the titles and abstracts. Then, the full text of the possibly relevant studies was examined for further suitability evaluations in our present meta-analysis. Meanwhile, to identify more eligible studies, we searched the references of related studies manually. The whole studies in the meta-analysis were firstly published in the primary literature with no reproduction in other studies.

Inclusion criteria and exclusion criteria

The publications in our meta-analysis were enrolled according to the following criteria: (1) studies that were case-control studies exploring the relationship between DNA repair gene ERCC polymorphisms and the PCa risk; (2) patients should be diagnosed by histopathology examination, and controls must be cancer-free, age- and sex-matched participants; and (3) the numbers or frequencies of alleles and genotypes in patients and controls can be extracted. The exclusion criteria were: (1) studies that are not related to ERCC polymorphisms and the PCa risk; (2) reviews, conference papers, meta-analyses, duplicated previous publications; (3) only case population; or (4) no sufficient data reported.

Quality assessment and data extraction

Two researchers independently assessed and extracted all the data from the included studies, and any divergences were solved by the discussion to achieve the agreement. Generally, the following information of each study should be extracted: first author, year of publication, study country, race, sample size, genotypic methods, allele genotype and genotype distribution for each polymorphism, and P-value of Hardy-Weinberg equilibrium (HWE) in controls.

Statistical analysis

We assessed the relationship between ERCCs polymorphisms and PCa risk by calculating crude Odds Ratios (ORs) with its 95%CI. And the significance of the pooled ORs was evaluated based on the Z-test12. In addition, Bonferroni corrections were applied to adjust the outcomes as well, with P-values less than 0.05 were considered as statistical significant13. The following five genetic models: the allele model (B vs. A), the homozygous model (BB vs. AA), the heterozygous model (BA vs. AA), the dominant model (BB + BA vs. AA), and the recessive model (BB vs. BA + AA) were employed to calculate the pooled ORs of each ERCC polymorphism (A: wild allele and B: mutated allele). Heterogeneity assumption was checked by I-square test and Q statistic test14. When the heterogeneity cannot be ignored (I-square ≥ 50% and P ≥ 0.1), the fixed-effect model was performed 15; otherwise, the random-effect model was applied16. All analyses were conducted by Stata software (Stata Corporation, College Station, TX; version 12.0).

Linkage disequilibrium (LD) analysis across populations

We extracted the datum from the 1000 genomes Project (http:// hapmap.ncbi.nlm.nih.gov/cgi-perl/gbrowse/hapmap3r2_B36/), containing ERCC genes polymorphisms assessed in our study. In general, populations enrolled in the project were composed of CHB (Han Chinese in Beijing, China), CEU (Utah residents with Northern and Western European ancestry from the CEPH collection), JPT (Japanese in Tokyo, Japan) and YRI (Yoruba in Ibadan, Nigeria). And we performed Haploview software to apply analyses, Moreover, for each of the above four populations, LD was assessed by I-square statistics.

Results

Study identification and characteristics of included studies

332 publications were identified after initial screening. After scoring out duplicates and screening the titles and abstracts, 305 publications were removed. Finally, 25 eligible publications were selected for further full-text review. Among these, we excluded five publications because relevant studies were less than three. We also excluded three publications because they describe the relationship of ERCCs polymorphisms with other cancer risk. Finally, 17 articles were enrolled comprising 29 case-controls studies17-33, and the researches selection process was presented in Figure S 1-4. The general demographical characteristics of all eligible publications of the ERCC2-rs1799793/rs238406/rs13181 and ERCC5-rs17655 polymorphisms were summarized in Table . For ERCC2-rs1799793 polymorphism, 11 eligible studies with 3,913 cases and 5,085 controls were enrolled in our meta-analysis. Five of these studies were performed in Caucasian ethnicity, two in Asian ethnicity, only one in African ethnicity and the others was mixed ethnicity (more than two descendants). Controls of five researches were hospital-based (H-B), while others were population-based (P-B). The genotype distributions of ERCC2-rs1799793 in the controls were totally consistent with HWE, except for three studies18, 24. For ERCC2-rs238406 polymorphism, four studies with 2,017 cases and 2,097 controls were selected for the present meta-analysis. Two studies were performed in Asian populations and the other two studies were conducted in Caucasian populations. The controls in three studies were P-B, and one was H-B. Additionally, the distributions of ERCC2-rs238406 polymorphisms genotype conformed to HWE, except for one study. For ERCC2-rs13181 polymorphism, we analyzed 11 studies with 4,456 cases and 4,946 controls. Four studies were in Asian ethnicity, four studies were in Caucasian ethnicity, one study was in African ethnicity and the rest of studies were mixed ethnicity. Controls in six studies were P-B, and three were H-B. As for HWE status, the genotype distributions of three studies were not in accordance with HWE18, 24. For ERCC5-rs17655 polymorphism, three studies with 1,040 cases and 1,229 controls met the inclusion criteria. They were performed in Asian, Caucasian and African ethnicity, respectively. One study was P-B, and other two studies were H-B. Additionally, the distributions of ERCC5-rs17655 polymorphism genotype were consistent with HWE, except for one studies19. We evaluated the quality of included studies by Newcastle-Ottawa Scale (NOS), and the outcomes were presented in Table S 1.

Quantitative synthesis and Subgroup analyses

Forest plots were applied to show meta-analysis results for each genetic polymorphism, and we calculated summary ORs for the pooling publications to assess the relationship between those polymorphisms and PCa risk. The results of the relationship between polymorphisms in ERCC2 and ERCC5 and PCa risk were shown in Table Overall, no statistical connection was observed for the relationship between the polymorphism in rs1799793 and PCa risk (Figure . Nevertheless, subgroup analysis based on ethnicity revealed that rs1799793 polymorphism was relevant to the increased susceptibility to Pca in Asian population in the allelic model (B vs. A: OR = 1.537, 95%CI = 1.240-1.906, PA < 0.001), the homozygous model (BB vs. AA: OR = 2.089, 95%CI: 1.388-3.145, PA < 0.001) and the recessive model (BB vs. BA+AA: OR = 1.929, 95%CI = 1.313-2.835, PA= 0.020), as showing in Figure S 16. Furthermore, we did not find any significant results between ERCC2-rs1799793 polymorphism and PCa risk for the subgroup analyses based on the source of control and HWE status. For ERCC2-rs238406, ERCC2-rs13181 polymorphisms, no significant associations were identified between gene polymorphisms and PCa risk (Figure S 5-6). Similarly, there was no significant relationship between ERCC5-rs17655 polymorphism and PCa risk (Figure . The subgroup analysis suggested that the ERCC2-rs238406, ERCC2-rs13181 and ERCC5-rs17655 polymorphisms were not statistically related to PCa based on the source of controls, ethnicity and HWE status.

Sensitivity analyses and publication bias

To better examine the influence of each study on the pooled OR, we conducted one-way sensitivity analyses by excluding each study, once at a time in every genetic model for rs1799793, rs238406, rs13181 and rs17655. The sensitivity analyses demonstrated that the ORs were not statistically influenced, which validated the stability of our data (Table S 2, Figure S 7-10). We used the Begg's funnel plots and Egger's regression tests to explore the potential publication bias for each gene polymorphism (Table S 3, Figure S 11-14). As for rs238406, rs13181 and rs17655, the shape of funnel plots and the Egger's regression tests results revealed no significant publication bias. For rs1799793, publication bias was identified in subgroup analyses of H-B and studies are not consistent with HWE, which could be graphically identified from the shape of funnel plot as well.

LD Analyses Across Populations

For a better understanding of this plot synthesis, we respectively conducted LD analysis to examine the presence of bins in the region containing these variants in each ERCC2 genes (polymorphisms including ERCC2-rs1799793, ERCC2-rs238406 and ERCC2-rs13181), and the detail information was presented in Table S 4 and Figure S 15.

Discussion

The present meta-analysis investigated the connections between four commonly studied polymorphisms (ERCC2-rs1799793/rs238406/rs13181 and ERCC5-rs17655) and the PCa risk. Finally, a total of 11,427 cases and 13,358 controls from 27 publications were enrolled in our analysis. The overall results suggested that none of these polymorphisms was connected with the risk of PCa. However, when the subgroup analysis was performed by ethnicity, the ERCC2-rs1799793 variant homozygous genotype was identified statistically related to the risk of PCa. Among various carcinogenic factors, DNA damage could be one of the most frequently reported pathogenesis and could further result in genomic instability. Therefore, sequence variants in DNA repair genes, which are important in maintaining DNA stability, may affect DNA repair capacity and consequently increase an individual's susceptibility to PCa. Numerous studies have explored the the relationship between DNA repair gene ERCC2 polymorphisms and cancer risk. Bau et al.18 observed a significant difference in the frequency of the ERCC2-rs1799793 genotype between the PCa and control groups in Asian populations. Mandal et al.30 found that ERCC2-rs1799793 variant BB genotype was related to increased risk for PCa. Meanwhile, ERCC5 gene also plays a crucial role in the DNA repair machinery. It is generally accepted that severe autosomal recessive diseases, such as XP, CS and TTD may result from the defects of ERCC534. Several publications have reported that ERCC5 polymorphisms are related to the development of a variety of cancers, such as breast cancer35, bladder cancer36 and PCa20. Thus, it seems that deficiency in the DNA repair gene ERCC2 and ERCC5 are thought to have a central role in the modulation of PCa susceptibility. Nevertheless, the present meta-analysis revealed no overall associations for the relationship between the ERCC2-rs1799793, ERCC2-rs238406, ERCC2-rs13181, ERCC5-rs17655 polymorphisms and the PCa risk. Our results were consistent with the findings of Agalliuet al25 but different from Mirecka et al22 who found polymorphism in ERCC2 gene appeared to be connected with the risk of PCa. Furthermore, when subgroup analysis was stratified by ethnicity, ERCC2-rs1799793 polymorphism was observed to be related to an increased risk of PCa in Asian population. Besides, stratification analyses according to the source of controls, ethnicity and HWE status, no significant results were identified for ERCC2-rs13181, ERCC2-rs238406 and ERCC5-rs17655 polymorphisms. A comparison of the polymorphisms of ERCC2 and ERCC5 that did not present a noteworthy connection with PCa may be owing to the characteristics of low-penetrance genes. It is widely accepted that cancer etiology is polygenic and has a complex disease phenotype, thus, single genetic polymorphism is frequently inadequate to prognosticate the risk of cancer. For different carcinogens and different tumors, DNA repair may occur in a rather unspecified pattern. Although some investigators have explained the tissue-specific balance between apoptotic signals and repair effects in different tissues, the result that certain SNPs seem to appear to be in opposite risk trends at distinct carcinoma sites may be more likely owing to chance. There are some advantages in our research that need to be point out. Firstly, as no studies had covered all the available ERCC genes polymorphisms37-39 to fully illustrate the relationship between ERCC polymorphisms and Pca, we applied a systematic document retrieval and acquire 17 qualified researches comprising 29 case-controls studies concerning the relationships between four reported ERCC genes polymorphisms and the PCa risk, which is our best advantage compared to other published articles. Secondly, quality of all the enrolled studies was assessed by Newcastle- Ottawa Scale (NOS) to avoid low quality studies affecting the overall quality. Fourthly, subgroup analysis was performed by ethnicity, source of control and HWE for the identification of the possible sources of heterogeneity. Thirdly, the data in our analysis were adjusted on the basis of the corresponding formula increasing the accuracy of the results. Lastly, the effect of each study on the pooled OR was tested using sensitivity analyses, and publication bias was evaluated by Egger's test and Begg's funnel plot. However, there are several deficiencies in our study that should be addressed. Firstly, the number of enrolled studies for each polymorphism was insufficient, particularly the studies analyzing the rs17655 polymorphism (only three case-control studies), making it more difficult for us to find the statistical relationship between ERCC5-rs17655 and PCa risk. Secondly, histological types of PCa may be different amongst different researches. It is more reasonable to compare the relationship between ERCC polymorphism with Pca risk in the same histological type as certain polymorphisms may not be susceptibility for all Pca histological types. Thirdly, as for ethnicity subgroup analysis, the involved ethnicities were limited (only Asian, African and Caucasian population) and further studies of a larger sample size were needed to explore the influences of different ethnicities. Meanwhile, there were only two studies concerning ERCC2-rs238406 polymorphisms in Asian populations even we updated the search with more acquired databases till the lasted time, which may result in less rigorous of the conclusion. Lastly, several potentially confounding factors were not noted in this study, such as the age, smoking, alcohol consumption, lifestyles, environmental factors and so on. In conclusion, our study demonstrates that ERCC2-rs1799793 polymorphism may be a risk factor for PCa in Asian population. Future functional researches with more ethnicities and participants are warranted to assess the more comprehensive influence of the genes encompassed in DNA repair genes and risk of PCa. And we are starting to collect clinical prostate cancer samples and paired normal control samples for further micro gene chips test, aiming to get more credible verification of the relationship between the ERCC2-rs1799793, ERCC2-rs238406, ERCC2-rs13181 and ERCC5-rs17655 polymorphisms and Pca. Supplementary figures and tables. Click here for additional data file.
Table 1

Characteristics of the eligible studies included in the meta-analysis.

SNPFirst AuthorYearEthnicitySource Of ControlCaseControl
AAABBBAAABBBHWE
ERCC2-rs1799793Rybicki et al.2004CaucasianP-B2302697218021839Y
Mixed2772867321023139Y
Bau et al.2007AsianH-B62392231010663Y
Agalliu et al.2009CaucasianP-B545575120527528166Y
African10631765152Y
Mandal et al.2010AsianP-B765639998120Y
Lavender et al.2010MixedH-B1463955101165Y
Dhillon et al.2011CaucasianH-B71378804210Y
Yeoh et al.2011OceaniaH-B71378804210Y
Mirecka et al.2014CaucasianP-B19924912437721832Y
Fachal et al.2012CaucasianH-B1417329827789Y
ERCC2-rs238406Zhou et al.2013AsianH-B265321384913Y
Mirecka et al.2014CaucasianP-B11330099141411126Y
Agalliu et al.2009CaucasianP-B365636260383600255Y
African11229365160Y
ERCC2-rs13181Rybicki et al.2004CaucasianP-B2302697218021839Y
Mixed2772867321023139Y
Ritchey et al.2005AsianP-B1411921334N.A.
Bau et al.2007AsianH-B111102441335Y
Agalliu et al.2009CaucasianP-B505575153480571177Y
African87481150285Y
Mandal et al.2010AsianP-B738414899417Y
Gao et al.2010AmericaH-B18617864495613Y
Lavender et al.2010MixedH-B110601336719438Y
Sobti et al.2012AsianP-B626721676914Y
Mirecka et al.2014CaucasianP-B231302122319444162Y
ERCC5-rs17655Hooker et al.2008AfricanH-B741196110014160Y
Berhane et al.2011AsianH-B58722066759Y
Mirecka et al.2014CaucasianP-B3962083252322431Y

A: wild allele; B: mutated allele; HWE: Hardy Weinberg Equilibrium; H-B: hospital-based; P-B: population-based; Y: study conformed to HWE; N.A.: study cannot calculate HWE.

Table 2

Results of the association between ERCC2 and ERCC5 polymorphisms and PCa risk.

SNPComparisonSubgroupNPHPZPARandomFixed
rs13181B vs.AOverall110.8200.6791.0001.014 (0.950-1.082)1.014 (0.950-1.082)
B vs.AAsian40.7630.3971.0001.092 (0.894-1.333)1.090 (0.893-1.331)
B vs.ACaucasian40.3790.7091.0000.986 (0.910-1.068)0.985 (0.911-1.065)
B vs.AOther ethnicities30.9870.3251.0001.074 (0.932-1.238)1.074 (0.932-1.238)
B vs.AH-B30.8330.4921.0001.072 (0.883-1.301)1.070 (0.881-1.300)
B vs.AOther20.8740.1681.0001.094 (0.963-1.244)1.094 (0.963-1.244)
B vs.AP-B60.7120.5201.0000.974 (0.897-1.056)0.974 (0.897-1.056)
B vs.AN30.8740.1331.0001.102 (0.971-1.249)1.101 (0.971-1.249)
B vs.AY80.8470.6731.0000.984 (0.912-1.061)0.984 (0.912-1.061)
BA vs.AAOverall110.9990.4121.0000.962 (0.876-1.056)0.962 (0.876-1.056)
BA vs.AAAsian40.8820.7851.0001.039 (0.798-1.352)1.037 (0.797-1.350)
BA vs.AACaucasian40.9510.3391.0000.945 (0.841-1.061)0.945 (0.841-1.061)
BA vs.AAOther ethnicities30.9130.7561.0000.970 (0.799-1.177)0.970 (0.799-1.177)
BA vs.AAH-B30.6440.8501.0000.976 (0.753-1.266)0.975 (0.752-1.265)
BA vs.AAOther20.8780.5901.0000.951 (0.793-1.141)0.951 (0.793-1.141)
BA vs.AAP-B60.9840.5421.0000.964 (0.855-1.086)0.963 (0.855-1.086)
BA vs.AAN30.8220.6811.0000.964 (0.808-1.150)0.964 (0.808-1.150)
BA vs.AAY80.9900.4781.0000.961 (0.861-1.073)0.961 (0.861-1.072)
BA+BB vs. AAOverall110.9930.7451.0000.986 (0.902-1.077)0.985 (0.902-1.077)
BA+BB vs. AAAsian40.8480.5791.0001.076 (0.836-1.385)1.074 (0.835-1.382)
BA+BB vs. AACaucasian40.8950.4311.0000.957 (0.857-1.068)0.957 (0.857-1.068)
BA+BB vs. AAOther ethnicities30.9820.8141.0001.022 (0.851-1.229)1.022 (0.851-1.229)
BA+BB vs. AAH-B30.7410.8391.0001.027 (0.804-1.312)1.026 (0.803-1.310)
BA+BB vs. AAOther20.8670.8051.0001.022 (0.859-1.216)1.022 (0.859-1.216)
BA+BB vs. AAP-B60.9390.5021.0000.962 (0.859-1.077)0.962 (0.859-1.077)
BA+BB vs. AAN30.8380.6941.0001.035 (0.875-1.225)1.034 (0.874-1.225)
BA+BB vs. AAY80.9810.5321.0000.967 (0.872-1.073)0.967 (0.872-1.073)
BB vs.AAOverall110.4660.3351.0001.071 (0.927-1.238)1.073 (0.930-1.239)
BB vs.AAAsian40.8450.2901.0001.314 (0.792-2.179)1.313 (0.793-2.173)
BB vs.AACaucasian40.1240.9751.0001.050 (0.814-1.354)0.997 (0.844-1.179)
BB vs.AAOther ethnicities30.8610.1031.0001.325 (0.941-1.866)1.327 (0.944-1.866)
BB vs.AAH-B30.9220.3521.0001.241 (0.787-1.955)1.240 (0.788-1.953)
BB vs.AAOther20.9540.0210.4201.432 (1.055-1.943)1.432 (1.055-1.943)
BB vs.AAP-B60.5560.5871.0000.952 (0.798-1.135)0.953 (0.799-1.135)
BB vs.AAN30.9910.0180.3601.437 (1.064-1.940)1.436 (1.063-1.939)
BB vs.AAY80.6690.8241.0000.981 (0.831-1.156)0.982 (0.833-1.157)
BB vs. BA+AAOverall110.3570.1791.0001.118 (0.962-1.300)1.096 (0.959-1.252)
BB vs. BA+AAAsian40.8030.3251.0001.274 (0.785-2.068)1.273 (0.787-2.061)
BB vs. BA+AACaucasian40.0750.4891.0001.096 (0.845-1.421)1.029 (0.883-1.200)
BB vs. BA+AAOther ethnicities30.7960.0681.0001.354 (0.973-1.883)1.357 (0.978-1.884)
BB vs. BA+AAH-B30.8600.2451.0001.289 (0.831-1.999)1.294 (0.838-1.998)
BB vs. BA+AAOther20.9880.0090.1801.469 (1.100-1.963)1.469 (1.100-1.963)
BB vs. BA+AAP-B60.5210.7511.0000.974 (0.828-1.145)0.974 (0.829-1.145)
BB vs. BA+AAN30.9970.0080.1601.472 (1.107-1.958)1.472 (1.106-1.958)
BB vs. BA+AAY80.5860.9471.0001.003 (0.861-1.169)1.005 (0.863-1.170)
rs1799793B vs.AOverall110.0000.0721.0001.259 (0.980-1.618)1.218 (1.138-1.303)
B vs.AAsian20.7490.000< 0.0011.539 (1.241-1.907)1.537 (1.240-1.906)
B vs.ACaucasian50.0000.4261.0001.215 (0.752-1.964)1.209 (1.113-1.313)
B vs.AMixed20.2440.2791.0001.158 (0.845-1.588)1.161 (0.886-1.523)
B vs.AOther ethnicities20.3860.2291.0001.109 (0.935-1.315)1.110 (0.937-1.316)
B vs.AH-B50.1740.0240.4801.191 (0.956-1.484)1.217 (1.026-1.445)
B vs.AOther20.8740.1681.0001.094 (0.963-1.244)1.094 (0.963-1.244)
B vs.AP-B40.0000.2151.0001.497 (0.792-2.832)1.285 (1.173-1.407)
B vs.AN30.0800.0711.0001.198 (0.984-1.459)1.156 (1.027-1.301)
B vs.AY80.0000.2291.0001.264 (0.863-1.851)1.249 (1.150-1.358)
BA vs.AAOverall110.0000.1031.0001.186 (0.966-1.455)1.170 (1.063-1.287)
BA vs.AAAsian20.0300.4811.0001.286 (0.639-2.591)1.269 (0.919-1.751)
BA vs.AACaucasian50.0000.2351.0001.242 (0.869-1.777)1.222 (1.086-1.375)
BA vs.AAMixed20.6280.5501.0001.106 (0.798-1.532)1.105 (0.797-1.532)
BA vs.AAOther ethnicities20.4220.8161.0000.972 (0.769-1.229)0.973 (0.770-1.229)
BA vs.AAH-B50.3770.0591.0001.249 (0.988-1.578)1.244 (0.992-1.561)
BA vs.AAOther20.8780.5901.0000.951 (0.793-1.141)0.951 (0.793-1.141)
BA vs.AAP-B40.0000.2771.0001.287 (0.816-2.030)1.276 (1.120-1.453)
BA vs.AAN30.0310.4921.0001.124 (0.805-1.569)1.037 (0.876-1.227)
BA vs.AAY80.0010.1711.0001.208 (0.922-1.582)1.239 (1.103-1.392)
BA+BB vs. AAOverall110.0000.0751.0001.264 (0.977-1.636)1.239 (1.132-1.355)
BA+BB vs. AAAsian20.1850.0060.1201.491 (1.020-2.179)1.490 (1.119-1.984)
BA+BB vs. AACaucasian50.0000.3281.0001.280 (0.781-2.098)1.268 (1.135-1.417)
BA+BB vs. AAMixed20.4210.3811.0001.152 (0.845-1.572)1.150 (0.842-1.570)
BA+BB vs. AAOther ethnicities20.3840.6901.0001.046 (0.836-1.308)1.047 (0.837-1.309)
BA+BB vs. AAH-B50.2790.0280.5601.255 (0.985-1.597)1.267 (1.026-1.564)
BA+BB vs. AAOther20.8670.8051.0001.022 (0.859-1.216)1.022 (0.859-1.216)
BA+BB vs. AAP-B40.0000.2271.0001.471 (0.786-2.752)1.351 (1.196-1.526)
BA+BB vs. AAN30.0380.2651.0001.188 (0.878-1.606)1.117 (0.953-1.310)
BA+BB vs. AAY80.0000.1911.0001.279 (0.885-1.850)1.300 (1.166-1.450)
BB vs.AAOverall110.0000.0771.0001.636 (0.948-2.824)1.496 (1.287-1.738)
BB vs.AAAsian20.3760.000< 0.0012.066 (1.367-3.123)2.089 (1.388-3.145)
BB vs.AACaucasian50.0000.5081.0001.423 (0.500-4.044)1.416 (1.183-1.695)
BB vs.AAMixed20.0950.4461.0001.675 (0.445-6.310)1.438 (0.667-3.100)
BB vs.AAOther ethnicities20.6250.0701.0001.459 (0.965-2.206)1.464 (0.969-2.212)
BB vs.AAH-B50.2600.1291.0001.340 (0.830-2.163)1.351 (0.916-1.991)
BB vs.AAOther20.9540.0210.4201.432 (1.055-1.943)1.432 (1.055-1.943)
BB vs.AAP-B40.0000.2401.0002.297 (0.574-9.200)1.560 (1.286-1.892)
BB vs.AAN30.8270.0030.0601.499 (1.147-1.959)1.493 (1.141-1.954)
BB vs.AAY80.0000.2481.0001.673 (0.699-4.007)1.497 (1.249-1.794)
BB vs. BA+AAOverall110.0000.0871.0001.533 (0.941-2.497)1.388 (1.203-1.603)
BB vs. BA+AAAsian20.1270.0010.0201.932 (1.058-3.529)1.929 (1.313-2.835)
BB vs. BA+AACaucasian50.0000.5761.0001.296 (0.523-3.214)1.284 (1.081-1.525)
BB vs. BA+AAMixed20.1010.3711.0001.644 (0.452-5.979)1.413 (0.662-3.019)
BB vs. BA+AAOther ethnicities20.6930.0440.8801.496 (1.008-2.222)1.500 (1.010-2.226)
BB vs. BA+AAH-B50.3010.3271.0001.218 (0.783-1.893)1.205 (0.830-1.751)
BB vs. BA+AAOther20.9880.0090.1801.469 (1.100-1.963)1.469 (1.100-1.963)
BB vs. BA+AAP-B40.0000.2451.0002.077 (0.606-7.111)1.402 (1.166-1.686)
BB vs. BA+AAN30.9980.0030.0601.462 (1.134-1.886)1.463 (1.134-1.887)
BB vs. BA+AAY80.0000.2691.0001.557 (0.711-3.410)1.355 (1.139-1.612)
rs238406B vs.AOverall40.2580.2901.0001.063 (0.941-1.201)1.049 (0.960-1.146)
B vs.ACaucasian20.6110.6051.0001.025 (0.935-1.123)1.025 (0.935-1.123)
B vs.AOther ethnicities20.6390.0370.7401.432 (1.023-2.005)1.431 (1.022-2.004)
B vs.AP-B30.7130.5341.0001.029 (0.940-1.127)1.029 (0.940-1.127)
B vs.AY30.1890.1791.0001.168 (0.916-1.490)1.075 (0.967-1.195)
BA vs.AAOverall40.4180.3351.0001.074 (0.928-1.243)1.074 (0.929-1.243)
BA vs.AACaucasian20.2510.5251.0001.040 (0.864-1.251)1.051 (0.901-1.226)
BA vs.AAOther ethnicities20.3910.2551.0001.310 (0.824-2.083)1.310 (0.823-2.084)
BA vs.AAP-B30.5170.5151.0001.051 (0.905-1.221)1.051 (0.905-1.221)
BA vs.AAY30.5630.1371.0001.137 (0.960-1.346)1.137 (0.960-1.346)
BA+BB vs. AAOverall40.3000.2581.0001.088 (0.913-1.297)1.083 (0.943-1.245)
BA+BB vs. AACaucasian20.3070.5161.0001.048 (0.901-1.218)1.050 (0.907-1.215)
BA+BB vs. AAOther ethnicities20.3770.1021.0001.456 (0.929-2.280)1.454 (0.928-2.280)
BA+BB vs. AAP-B30.5700.4671.0001.054 (0.914-1.216)1.054 (0.914-1.216)
BA+BB vs. AAY30.3520.1081.0001.150 (0.959-1.379)1.140 (0.972-1.338)
BB vs.AAOverall40.2340.3351.0001.133 (0.855-1.501)1.095 (0.910-1.318)
BB vs.AACaucasian20.6870.6571.0001.044 (0.863-1.264)1.044 (0.863-1.263)
BB vs.AAOther ethnicities20.7280.0280.5602.461 (1.084-5.586)2.502 (1.105-5.664)
BB vs.AAP-B30.6180.5931.0001.050 (0.868-1.270)1.053 (0.871-1.274)
BB vs.AAY30.1490.2361.0001.468 (0.755-2.856)1.139 (0.918-1.413)
BB vs. BA+AAOverall40.4100.5591.0001.045 (0.893-1.224)1.048 (0.895-1.227)
BB vs. BA+AACaucasian20.7900.8481.0001.016 (0.864-1.194)1.016 (0.864-1.194)
BB vs. BA+AAOther ethnicities20.5990.0821.0001.869 (0.899-3.889)1.908 (0.922-3.948)
BB vs. BA+AAP-B30.6400.7881.0001.020 (0.868-1.199)1.022 (0.870-1.201)
BB vs. BA+AAY30.2370.6291.0001.197 (0.757-1.891)1.047 (0.869-1.262)
rs17655B vs.AOverall30.8520.0040.0801.216 (1.064-1.391)1.216 (1.064-1.391)
B vs.AH-B20.5780.0400.8001.226 (1.009-1.489)1.226 (1.009-1.489)
B vs.AY20.8760.0160.3201.197 (1.034-1.385)1.197 (1.034-1.385)
BA G AAOverall30.8890.0661.0001.187 (0.989-1.424)1.187 (0.989-1.424)
BA vs.AAH-B20.8910.4561.0001.121 (0.830-1.515)1.121 (0.830-1.515)
BA vs.AAY20.7520.0661.0001.203 (0.988-1.466)1.203 (0.988-1.466)
BA+BB vs. AAOverall30.9920.0170.3401.236 (1.039-1.470)1.236 (1.039-1.470)
BA+BB vs. AAH-B20.9220.1641.0001.224 (0.921-1.626)1.224 (0.921-1.626)
BA+BB vs. AAY20.9010.0280.5601.234 (1.023-1.489)1.234 (1.023-1.489)
BB vs.AAOverall30.4320.0130.2601.490 (1.082-2.051)1.497 (1.089-2.057)
BB vs.AAH-B20.2220.0260.5201.666 (0.955-2.906)1.587 (1.056-2.385)
BB vs.AAY20.9830.0741.0001.369 (0.970-1.932)1.369 (0.970-1.932)
BB vs. BA+AAOverall30.3630.0280.5601.382 (1.027-1.860)1.389 (1.037-1.861)
BB vs. BA+AAH-B20.1700.0430.8601.576 (0.870-2.857)1.449 (1.012-2.075)
BB vs. BA+AAY20.9860.1341.0001.272 (0.928-1.744)1.272 (0.928-1.744)

PH: P value of heterogeneity; PZ: P value of Z test; PA: adjusted P value (PA = PZ *3 polymorphisms * 5 genetic models, and PA<0.05 means statistically significant); A: wild allele; B: mutated allele; HWE: Hardy Weinberg Equilibrium; H-B: hospital-based; P-B: population-based; Y: study conformed to HWE; N: study did not conform to HWE

  35 in total

Review 1.  How nucleotide excision repair protects against cancer.

Authors:  E C Friedberg
Journal:  Nat Rev Cancer       Date:  2001-10       Impact factor: 60.716

2.  Common variants of xeroderma pigmentosum genes and prostate cancer risk.

Authors:  Aneta Mirecka; Katarzyna Paszkowska-Szczur; Rodney J Scott; Bohdan Górski; Thierry van de Wetering; Dominika Wokołorczyk; Tomasz Gromowski; Pablo Serrano-Fernandez; Cezary Cybulski; Aniruddh Kashyap; Satish Gupta; Adam Gołąb; Marcin Słojewski; Andrzej Sikorski; Jan Lubiński; Tadeusz Dębniak
Journal:  Gene       Date:  2014-06-13       Impact factor: 3.688

3.  Impact of XPD gene polymorphism on risk of prostate cancer on north Indian population.

Authors:  Ranbir Chander Sobti; Nega Berhane; Shiferaw Melese; Salih Abdul Mahdi; Libsy Gupta; Hitender Thakur; Neha Singh
Journal:  Mol Cell Biochem       Date:  2011-11-25       Impact factor: 3.396

4.  Genetic variation in DNA repair genes and prostate cancer risk: results from a population-based study.

Authors:  Ilir Agalliu; Erika M Kwon; Claudia A Salinas; Joseph S Koopmeiners; Elaine A Ostrander; Janet L Stanford
Journal:  Cancer Causes Control       Date:  2009-11-10       Impact factor: 2.506

5.  Irofulven cytotoxicity depends on transcription-coupled nucleotide excision repair and is correlated with XPG expression in solid tumor cells.

Authors:  Florence Koeppel; Virginie Poindessous; Vladimir Lazar; Eric Raymond; Alain Sarasin; Annette K Larsen
Journal:  Clin Cancer Res       Date:  2004-08-15       Impact factor: 12.531

6.  Association of a XRCC3 polymorphism and rectum mean dose with the risk of acute radio-induced gastrointestinal toxicity in prostate cancer patients.

Authors:  Laura Fachal; Antonio Gómez-Caamaño; Paula Peleteiro; Ana Carballo; Patricia Calvo-Crespo; Manuel Sánchez-García; Ramón Lobato-Busto; Angel Carracedo; Ana Vega
Journal:  Radiother Oncol       Date:  2012-10-15       Impact factor: 6.280

7.  NAT2 and NER genetic variants and sporadic prostate cancer susceptibility in African Americans.

Authors:  S Hooker; C Bonilla; F Akereyeni; C Ahaghotu; R A Kittles
Journal:  Prostate Cancer Prostatic Dis       Date:  2007-11-20       Impact factor: 5.554

8.  Association of XPD polymorphisms with prostate cancer in Taiwanese patients.

Authors:  Da-Tian Bau; Hsi-Chin Wu; Chang-Fang Chiu; Cheng-Chieh Lin; Chin-Moo Hsu; Cheng-Li Wang; Rou-Fen Wang; Fuu-Jen Tsai
Journal:  Anticancer Res       Date:  2007 Jul-Aug       Impact factor: 2.480

9.  DNA repair gene polymorphisms and prostate cancer risk in South Australia--results of a pilot study.

Authors:  Varinderpal S Dhillon; Eric Yeoh; Michael Fenech
Journal:  Urol Oncol       Date:  2009-11-13       Impact factor: 3.498

10.  Susceptibility of XPD and hOGG1 genetic variants to prostate cancer.

Authors:  Cheng Zhou; Li-Ping Xie; Yi-Wei Lin; Kai Yang; Qi-Qi Mao; Yue Cheng
Journal:  Biomed Rep       Date:  2013-05-30
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  4 in total

1.  The link of ERCC2 rs13181 and ERCC4 rs2276466 polymorphisms with breast cancer in the Bangladeshi population.

Authors:  Shaid All Sahaba; Mohammad Abdur Rashid; Md Saiful Islam; Noor Ahmed Nahid; Mohd Nazmul Hasan Apu; Taposhi Nahid Sultana; Nusrat Islam Chaity; Md Mehedi Hasan; Mohammad Safiqul Islam
Journal:  Mol Biol Rep       Date:  2021-11-26       Impact factor: 2.316

2.  Identification of a Splenic Marginal Zone Lymphoma Signature: Preliminary Findings With Diagnostic Potential.

Authors:  Jacob E Robinson; Timothy C Greiner; Alyssa C Bouska; Javeed Iqbal; Christine E Cutucache
Journal:  Front Oncol       Date:  2020-05-08       Impact factor: 6.244

3.  Polymorphisms in ERCC4 and ERCC5 and risk of cancers: Systematic research synopsis, meta-analysis, and epidemiological evidence.

Authors:  Chunjian Zuo; Xiaolong Lv; Tianyu Liu; Lei Yang; Zelin Yang; Cao Yu; Huanwen Chen
Journal:  Front Oncol       Date:  2022-08-11       Impact factor: 5.738

4.  The Association of ERCC1 and ERCC5 Polymorphisms with Lung Cancer Risk in Han Chinese.

Authors:  Xueling Lan; Ying Li; Yefeng Wu; Xia Li; Lan Xu
Journal:  J Cancer       Date:  2022-01-01       Impact factor: 4.207

  4 in total

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