| Literature DB >> 35069899 |
Xueling Lan1, Ying Li2, Yefeng Wu3, Xia Li2, Lan Xu1.
Abstract
Background: Polymorphisms in DNA damage repair genes are important determinants for cancer susceptibility, clinical phenotype diversity, and therapy. However, their relationship with lung cancer remains unclear. This study aimed to investigate the role of DNA damage repair gene polymorphisms in the risk of lung cancer.Entities:
Keywords: ERCC; lung cancer; polymorphisms; risk
Year: 2022 PMID: 35069899 PMCID: PMC8771503 DOI: 10.7150/jca.59277
Source DB: PubMed Journal: J Cancer ISSN: 1837-9664 Impact factor: 4.207
The baseline characteristics of the objects
| Characteristics | Cases | Controls | |
|---|---|---|---|
| Sample size | 200 | 401 | |
|
| <0.001 | ||
| Mean±SD | 58.76±9.60 | 36.25±12.63 | |
| Mmenarche | 60.5 | 32 | |
| Range | 27-80 | 17-73 | |
|
| |||
| Female | 75 (37.5%) | 175 (43.6%) | 0.150 |
| Male | 125 (62.5%) | 226 (56.4%) | |
|
| |||
| 1-2 | 60 (45.8%) | ||
| 3-4 | 71 (54.2%) | ||
|
| |||
| Negative | 29 (19.5%) | ||
| Positive | 120 (80.5%) | ||
|
| |||
| Negative | 71 (36.4%) | ||
| Positive | 124 (63.6%) | ||
|
| |||
| I-II | 20 (10.1%) | ||
| III-IV | 178 (89.9%) | ||
|
| |||
| No | 117 (58.5%) | ||
| Yes | 83 (41.5%) | ||
|
| |||
| No | 42 (21.0%) | ||
| Yes | 158 (79.0%) | ||
|
| |||
| No | 170 (85.9%) | ||
| Yes | 28 (14.1%) | ||
|
| |||
| Small cell cancer | 57 (30.0%) | ||
| Squamous carcinoma | 37 (19.5%) | ||
| Adenocarcinoma | 96 (50.5%) | ||
|
| |||
| ≤50 | 5 (26.3%) | ||
| >50 | 14 (73.7%) | ||
|
| |||
| Wild type | 19 (35.8%) | ||
| Mutation type | 34 (64.2%) | ||
|
| |||
| Normal | 57 (78.1%) | ||
| Increased | 16 (21.9%) | ||
|
| |||
| Normal | 95 (50.3%) | ||
| Increased | 94 (49.7%) | ||
|
| |||
| Normal | 68 (43.6%) | ||
| Increased | 88 (56.4%) | ||
|
| |||
| Normal | 35 (23.2%) | ||
| Increased | 116 (76.8%) | ||
|
| |||
| Normal | 22 (45.8%) | ||
| Increased | 26 (54.2%) | ||
|
| |||
| Normal | 4 (8.7%) | ||
| Increased | 42 (91.3%) | ||
|
| |||
| Normal | 5 (71.4%) | ||
| Increased | 2 (28.6%) |
The association of ERCC1 and ERCC5 polymorphisms with lung cancer risk
| Genetype | SNP | Cases | Controls | OR (95%CI) | ||
|---|---|---|---|---|---|---|
| ERCC1 | rs735482 | N=199 | N=400 | 0.367 | ||
| AA | 61(30.5%) | 124(31.0%) | / | 1(Ref) | ||
| CA | 107(53.5%) | 196(49.0%) | 0.161 | 1.49(0.85,2.58) | ||
| CC | 31(15.5%) | 80(20.0%) | 0.537 | 0.79(0.38,1.66) | ||
| CA+CC vs. AA | / | / | 0.375 | 1.27(0.75,2.14) | ||
| CC vs. CA+AA | / | / | 0.153 | 0.62(0.32,1.19) | ||
| ERCC1 | rs11615 | N=200 | N=400 | 0.299 | ||
| AA | 18(9.0%) | 24(6.0%) | / | 1(Ref) | ||
| GA | 67(33.5%) | 151(37.8%) | 0.620 | 0.77(0.28,2.16) | ||
| GG | 115(57.5%) | 225(56.3%) | 0.946 | 0.97(0.36,2.60) | ||
| GA+GG vs. AA | / | / | 0.799 | 0.88(0.34,2.32) | ||
| GG vs. GA+AA | / | / | 0.507 | 1.18(0.72,1.92) | ||
| ERCC1 | rs3212986 | N=199 | N=396 | 0.809 | ||
| CC | 95(47.7%) | 187(47.2%) | / | 1(Ref) | ||
| CA | 83(41.7%) | 173(43.7%) | 0.993 | 1.00(0.60,1.66) | ||
| AA | 21(10.6%) | 36(9.1%) | 0.812 | 1.11(0.48,2.55) | ||
| CA+AA vs. CC | / | / | 0.942 | 1.02(0.63,1.65) | ||
| AA vs. CA+CC | / | / | 0.799 | 1.11(0.51,2.45) | ||
| ERCC5 | rs4771436 | N=198 | N=396 | 0.616 | ||
| TT | 104(52.5%) | 207(52.3%) | / | 1(Ref) | ||
| GT | 78(39.4%) | 165(41.7%) | 0.498 | 0.84(0.50,1.40) | ||
| GG | 16(8.1%) | 24(6.1%) | 2.89(1.11,7.53) | |||
| GT+GG vs. TT | / | / | 0.951 | 1.02(0.63,1.64) | ||
| GG vs. GT+TT | / | / | 3.25(1.26,8.36) | |||
| ERCC5 | rs1047768 | N=200 | N=396 | 0.391 | ||
| TT | 105(52.5%) | 197(49.7%) | / | |||
| CT | 72(36.0%) | 163(41.2%) | 0.181 | 0.70(0.41,1.18) | ||
| CC | 23(11.5%) | 36(9.1%) | 0.105 | 2.09(0.86,5.08) | ||
| CT+CC vs. TT | / | / | 0.550 | 0.86(0.53,1.40) | ||
| CC vs. CT+TT | / | / | 2.40(1.02,5.61) |
Stratified analysis of the association of ERCC1 and ERCC5 polymorphisms with lung cancer risk
| Genetype | SNP | Cases | Controls | OR (95%CI) | ||
|---|---|---|---|---|---|---|
|
| ||||||
| ERCC1 | rs735482 | N=100 | N=17 | 0.499 | ||
| AA | 30(25.6%) | 6(5.1%) | / | 1(Ref) | ||
| CA | 50(42.7%) | 6(5.1%) | 0.348 | 1.82(0.52,6.39) | ||
| CC | 20(17.1%) | 5(4.3%) | 0.809 | 0.85(0.22,3.22) | ||
| CA+CC vs. AA | / | / | 0.558 | 1.39(0.46,4.20) | ||
| CC vs. CA+AA | / | / | 0.378 | 0.59(0.18,1.90) | ||
| ERCC1 | rs11615 | N=100 | N=17 | 0.360 | ||
| AA | 11(9.4%) | 1(0.9%) | / | 1(Ref) | ||
| GA | 37(31.6%) | 4(3.4%) | 0.808 | 1.36(0.11,16.18) | ||
| GG | 52(44.4%) | 12(10.3%) | 0.424 | 0.41(0.05,3.62) | ||
| GA+GG vs. AA | / | / | 0.610 | 0.57(0.07,4.88) | ||
| GG vs. GA+AA | / | / | 0.139 | 0.43(0.14,1.32) | ||
| ERCC1 | rs3212986 | N=100 | N=17 | 0.821 | ||
| CC | 55(47.0%) | 8(6.8%) | / | 1(Ref) | ||
| CA | 36(30.8%) | 7(6.0%) | 0.538 | 0.70(0.23,2.16) | ||
| AA | 9(7.7%) | 2(1.7%) | 0.553 | 0.59(0.10,3.37) | ||
| CA+AA vs. CC | / | / | 0.481 | 0.69(0.24,1.95) | ||
| AA vs. CA+CC | / | / | 0.676 | 0.70(0.13,3.71) | ||
| ERCC5 | rs4771436 | N=98 | N=17 | 0.388 | ||
| TT | 51(44.3%) | 9(7.8%) | / | 1(Ref) | ||
| GT | 43(37.4%) | 6(5.2%) | 0.503 | 1.49(0.46,4.82) | ||
| GG | 4(3.5%) | 2(1.7%) | 0.263 | 0.32(0.05,2.34) | ||
| GT+GG vs. TT | / | / | 0.820 | 1.13(0.39,3.30) | ||
| GG vs. GT+TT | 0.1 | / | 0.189 | 0.29(0.04,1.86) | ||
| ERCC5 | rs1047768 | N=100 | N=17 | 0.798 | ||
| TT | 46(39.3%) | 9(7.7%) | / | 1(Ref) | ||
| CT | 44(37.6%) | 6(5.1%) | 0.540 | 1.42(0.46,4.41) | ||
| CC | 10(8.5%) | 2(1.7%) | 0.960 | 1.05(0.18,5.93) | ||
| CT+CC vs. TT | / | / | 0.642 | 1.28(0.45,3.63) | ||
| CC vs. CT+TT | / | / | 0.746 | 0.76(0.14,4.11) | ||
|
| ||||||
| ERCC1 | rs735482 | N=99 | N=383 | 0.126 | ||
| AA | 31(6.4%) | 118(24.5%) | / | 1(Ref) | ||
| CA | 57(11.8%) | 190(39.4%) | 0.279 | 1.40(0.76,2.60) | ||
| CC | 11(2.3%) | 75(15.6%) | 0.763 | 0.87(0.35,2.16) | ||
| CA+CC vs. AA | / | / | 0.450 | 1.26(0.69,2.28) | ||
| CC vs. CA+AA | / | / | 0.296 | 0.66(0.30,1.44) | ||
| ERCC1 | rs11615 | N=100 | N=383 | 0.301 | ||
| AA | 7(1.4%) | 23(4.8%) | / | 1(Ref) | ||
| GA | 30(6.2%) | 147(30.4%) | 0.540 | 0.70(0.23,2.16) | ||
| GG | 63(13.0%) | 213(44.1%) | 0.665 | 1.31(0.39,4.45) | ||
| GA+GG vs. AA | / | / | 0.977 | 0.98(0.32,3.04) | ||
| GG vs. GA+AA | / | / | 0.112 | 1.58(0.90,2.77) | ||
| ERCC1 | rs3212986 | N=99 | N=379 | 0.397 | ||
| CC | 40(8.4%) | 179(37.4%) | / | 1(Ref) | ||
| CA | 47(9.8%) | 166(34.7%) | 0.764 | 1.09(0.62,1.93) | ||
| AA | 12(2.5%) | 34(7.1%) | 0.574 | 1.31(0.52,3.30) | ||
| CA+AA vs. CC | / | / | 0.683 | 1.12(0.65,1.94) | ||
| AA vs. CA+CC | / | / | 0.648 | 1.23(0.51,2.96) | ||
| ERCC5 | rs4771436 | N=100 | N=379 | 0.073 | ||
| TT | 53(11.1%) | 198(41.3%) | / | 1(Ref) | ||
| GT | 35(7.3%) | 159(33.2%) | 0.247 | 0.71(0.39,1.27) | ||
| GG | 12(2.5%) | 22(4.6%) | 5.01(1.77,14.20) | |||
| GT+GG vs. TT | / | / | 0.925 | 0.97(0.57,1.67) | ||
| GG vs. GT+TT | / | / | 5.39(1.99,14.62) | |||
| ERCC5 | rs1047768 | N=100 | N=379 | |||
| TT | 59(12.3%) | 188(39.2%) | / | 1(Ref) | ||
| CT | 28(5.8%) | 157(32.8%) | 0.073 | 0.57(0.31,1.05) | ||
| CC | 13(2.7%) | 34(7.1%) | 3.06(1.09,8.63) | |||
| CT+CC vs. TT | / | / | 0.383 | 0.78(0.46,1.35) | ||
| CC vs. CT+TT | / | / | 3.25(1.29,8.19) | |||
|
| ||||||
| ERCC1 | rs735482 | N=125 | N=225 | 0.104 | ||
| AA | 39(11.1%) | 76(21.7%) | / | 1(Ref) | ||
| CA | 67(19.1%) | 97(27.7%) | 0.264 | 1.53(0.73,3.22) | ||
| CC | 19(5.4%) | 52(14.9%) | 0.393 | 0.66(0.25,1.71) | ||
| CA+CC vs. AA | / | / | 0.590 | 1.21(0.61,2.40) | ||
| CC vs. CA+AA | / | / | 0.131 | 0.52(0.22,1.22) | ||
| ERCC1 | rs11615 | N=125 | N=225 | 0.405 | ||
| AA | 14(4.0%) | 16(4.6%) | / | 1(Ref) | ||
| GA | 40(11.4%) | 79(22.6%) | 0.500 | 0.65(0.19,2.27) | ||
| GG | 71(20.3%) | 130(37.1%) | 0.798 | 0.86(0.27,2.77) | ||
| GA+GG vs. AA | / | / | 0.665 | 0.78(0.24,2.46) | ||
| GG vs. GA+AA | / | / | 0.547 | 1.22(0.64,2.35) | ||
| ERCC1 | rs3212986 | N=125 | N=222 | 0.981 | ||
| CC | 59(17.0%) | 105(30.0%) | / | 1(Ref) | ||
| CA | 56(16.1%) | 98(28.2%) | 0.965 | 1.02(0.52,1.98) | ||
| AA | 10(2.9%) | 19(5.5%) | 0.780 | 1.19(0.35,3.98) | ||
| CA+AA vs. CC | / | / | 0.906 | 1.04(0.55,1.99) | ||
| AA vs. CA+CC | / | / | 0.778 | 1.19(0.36,3.88) | ||
| ERCC5 | rs4771436 | N=124 | N=222 | 0.077 | ||
| TT | 75(21.7%) | 113(32.7%) | / | 1(Ref) | ||
| GT | 38(11.0%) | 95(27.5%) | 0.070 | 0.51(0.25,1.06) | ||
| GG | 11(3.2%) | 14(4.0%) | 0.186 | 2.39(0.66,8.73) | ||
| GT+GG vs. TT | / | / | 0.234 | 0.67(0.35,1.29) | ||
| GG vs. GT+TT | / | / | 0.063 | 3.52(0.94,13.22) | ||
| ERCC5 | rs1047768 | N=125 | N=223 | 0.420 | ||
| TT | 63(18.1%) | 112(32.2%) | / | 1(Ref) | ||
| CT | 43(12.4%) | 87(25.0%) | 0.359 | 0.71(0.34,1.48) | ||
| CC | 19(5.5%) | 24(6.9%) | 0.095 | 2.54(0.85,7.59) | ||
| CT+CC vs. TT | / | / | 0.905 | 0.96(0.50,1.84) | ||
| CC vs. CT+TT | / | / | 3.00(1.04,8.68) | |||
|
| ||||||
| ERCC1 | rs735482 | N=74 | N=175 | 0.924 | ||
| AA | 22(8.8%) | 48(19.3%) | / | 1(Ref) | ||
| CA | 40(16.1%) | 99(39.8%) | 0.410 | 1.42(0.62,3.23) | ||
| CC | 12(4.8%) | 28(11.2%) | 0.938 | 1.05(0.32,3.46) | ||
| CA+CC vs. AA | / | / | 0.460 | 1.36(0.60,3.06) | ||
| CC vs. CA+AA | / | / | 0.665 | 0.80(0.30,2.18) | ||
| ERCC1 | rs11615 | N=75 | N=175 | 0.743 | ||
| AA | 4(1.6%) | 8(3.2%) | / | 1(Ref) | ||
| GA | 27(10.8%) | 72(28.8%) | 0.897 | 1.13(0.17,7.56) | ||
| GG | 44(17.6%) | 95(38.0%) | 0.798 | 1.28(0.19,8.44) | ||
| GA+GG vs. AA | / | / | 0.838 | 1.21(0.19,7.55) | ||
| GG vs. GA+AA | / | / | 0.748 | 1.13(0.54,2.34) | ||
| ERCC1 | rs3212986 | N=74 | N=174 | 0.412 | ||
| CC | 36(14.5%) | 82(33.1%) | / | 1(Ref) | ||
| CA | 27(10.9%) | 75(30.2%) | 0.976 | 0.99(0.45,2.16) | ||
| AA | 11(4.4%) | 17(6.9%) | 0.963 | 1.03(0.32,3.30) | ||
| CA+AA vs. CC | / | / | 0.986 | 0.99(0.48,2.05) | ||
| AA vs. CA+CC | / | / | 0.935 | 1.05(0.36,3.06) | ||
| ERCC5 | rs4771436 | N=74 | N=174 | 0.099 | ||
| TT | 29(11.7%) | 94(37.9%) | / | 1(Ref) | ||
| GT | 40(16.1%) | 70(28.2%) | 0.323 | 1.47(0.69,3.14) | ||
| GG | 5(2.0%) | 10(4.0%) | 0.073 | 3.65(0.89,14.99) | ||
| GT+GG vs. TT | / | / | 0.164 | 1.67(0.81,3.43) | ||
| GG vs. GT+TT | / | / | 0.108 | 3.00(0.78,11.46) | ||
| ERCC5 | rs1047768 | N=75 | N=173 | 0.597 | ||
| TT | 42(16.9%) | 85(34.3%) | / | 1(Ref) | ||
| CT | 29(11.7%) | 76(30.6%) | 0.347 | 0.70(0.33,1.48) | ||
| CC | 4(1.6%) | 12(4.8%) | 0.654 | 1.43(0.30,6.77) | ||
| CT+CC vs. TT | / | / | 0.447 | 0.76(0.37,1.55) | ||
| CC vs. CT+TT | / | / | 0.561 | 1.56(0.35,6.89) |
The association of ERCC1 and ERCC5 polymorphisms with clinicopathological parameters of lung cancer patients
| ERCC1 rs735482 | ERCC1 rs11615 | ERCC1 rs3212986 | ERCC5 rs4771436 | ERCC5 rs1047768 | |||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Characteristics | Wild | Heterozygous | Mutation |
|
| Wild | Heterozygous | Mutation |
|
| Wild | Heterozygous | Mutation |
|
| Wild | Heterozygous | Mutation |
|
| Wild | Heterozygous | Mutation |
|
| ||||||||||
|
| 0.789 | 0.528 | 0.976 | 0.379 | 0.150 | 0.135 | 0.124 | 0.632 | 0.106 | 0.612 | 0.119 | 0.942 | 0.798 | 0.513 | 0.965 | 0.470 | 0.374 | 0.701 | 0.377 | 0.885 | |||||||||||||||
| Age ≤60 | 149 | 247 | 86 | 30 | 177 | 276 | 219 | 213 | 46 | 251 | 194 | 34 | 247 | 185 | 47 | ||||||||||||||||||||
| Age >60 | 36 | 56 | 25 | 12 | 41 | 64 | 63 | 43 | 11 | 60 | 49 | 6 | 55 | 50 | 12 | ||||||||||||||||||||
|
| 0.082 | 0.756 | 0.215 | 0.190 | 0.124 | 0.074 | 0.656 | 0.637 | 0.311 | 0.939 | 0.231 | 0.176 | 0.803 | 0.254 | 0.572 | 0.542 | 0.824 | ||||||||||||||||||
| Female | 70 | 139 | 40 | 12 | 99 | 139 | 118 | 102 | 28 | 123 | 110 | 15 | 127 | 105 | 16 | ||||||||||||||||||||
| Male | 115 | 164 | 71 | 30 | 119 | 201 | 164 | 154 | 29 | 188 | 133 | 25 | 175 | 130 | 43 | ||||||||||||||||||||
|
| 0.723 | 0.489 | 0.617 | 0.551 | 0.056 | 0.264 | 0.142 | 0.537 | 0.106 | 0.783 | 0.205 | 0.442 | 0.557 | 0.657 | 0.741 | 0.540 | 0.763 | 0.480 | 0.970 | 0.423 | |||||||||||||||
| 1-2 | 19 | 33 | 7 | 9 | 14 | 37 | 25 | 29 | 5 | 33 | 20 | 7 | 34 | 21 | 5 | ||||||||||||||||||||
| 3-4 | 20 | 40 | 11 | 5 | 26 | 40 | 38 | 24 | 9 | 37 | 28 | 6 | 40 | 22 | 9 | ||||||||||||||||||||
|
| 0.370 | 0.926 | 0.463 | 0.578 | 0.485 | 0.484 | 0.457 | 0.820 | 0.979 | 0.165 | 0.652 | 0.154 | 0.170 | 0.476 | 0.162 | 0.730 | 0.577 | 0.468 | 0.463 | 0.554 | |||||||||||||||
| Negative | 7 | 19 | 3 | 4 | 9 | 16 | 15 | 13 | 1 | 12 | 14 | 3 | 14 | 11 | 4 | ||||||||||||||||||||
| Positive | 37 | 65 | 17 | 11 | 40 | 69 | 56 | 48 | 15 | 67 | 43 | 10 | 67 | 41 | 12 | ||||||||||||||||||||
|
| 0.572 | 0.577 | 0.522 | 0.733 | 0.383 | 0.543 | 0.457 | 0.861 | 0.291 | 0.213 | 0.666 | 0.100 | 0.646 | 0.864 | 0.649 | 0.951 | 0.237 | 0.358 | 0.180 | 0.526 | |||||||||||||||
| Negative | 24 | 36 | 10 | 8 | 22 | 41 | 35 | 24 | 11 | 36 | 29 | 6 | 42 | 22 | 7 | ||||||||||||||||||||
| Positive | 37 | 67 | 20 | 10 | 44 | 70 | 58 | 56 | 10 | 66 | 46 | 10 | 61 | 47 | 16 | ||||||||||||||||||||
|
| 0.520 | 0.797 | 0.645 | 0.548 | 0.518 | 0.511 | 0.502 | 0.817 | 0.311 | 0.759 | 0.341 | 0.984 | 0.514 | 0.629 | 0.475 | 0.752 | 0.724 | 0.891 | 0.811 | 0.812 | |||||||||||||||
| I-II | 5 | 12 | 2 | 1 | 7 | 12 | 7 | 10 | 2 | 9 | 9 | 2 | 10 | 8 | 2 | ||||||||||||||||||||
| III-IV | 56 | 94 | 28 | 17 | 59 | 102 | 86 | 73 | 19 | 94 | 68 | 14 | 94 | 63 | 21 | ||||||||||||||||||||
|
| 0.107 | 0.715 | 0.155 | 0.671 | 0.840 | 0.775 | 0.790 | 0.833 | 0.880 | 0.879 | 0.858 | 0.910 | 0.390 | 0.709 | 0.112 | 0.138 | 0.486 | ||||||||||||||||||
| No | 31 | 68 | 17 | 10 | 39 | 68 | 56 | 48 | 12 | 53 | 52 | 10 | 59 | 49 | 9 | ||||||||||||||||||||
| Yes | 30 | 39 | 14 | 8 | 28 | 47 | 39 | 35 | 9 | 51 | 26 | 6 | 46 | 23 | 14 | ||||||||||||||||||||
|
| 0.451 | 0.572 | 0.423 | 0.795 | 0.783 | 0.689 | 0.894 | 0.269 | 0.925 | 0.781 | 0.986 | 0.748 | 0.959 | 0.378 | 0.744 | 0.374 | 0.948 | 0.098 | 0.476 | 0.085 | |||||||||||||||
| No | 46 | 86 | 25 | 14 | 50 | 94 | 75 | 66 | 16 | 81 | 61 | 14 | 85 | 58 | 15 | ||||||||||||||||||||
| Yes | 15 | 21 | 6 | 4 | 17 | 21 | 20 | 17 | 5 | 23 | 17 | 2 | 20 | 14 | 8 | ||||||||||||||||||||
|
| 0.471 | 0.974 | 0.557 | 0.739 | 0.907 | 0.607 | 0.699 | 0.438 | 0.719 | 0.452 | 0.578 | 0.502 | 0.782 | 0.573 | 0.953 | 0.510 | 0.590 | 0.835 | 0.597 | 0.943 | |||||||||||||||
| No | 51 | 92 | 26 | 16 | 58 | 96 | 82 | 70 | 17 | 89 | 67 | 12 | 88 | 63 | 19 | ||||||||||||||||||||
| Yes | 10 | 13 | 5 | 2 | 8 | 18 | 12 | 12 | 4 | 15 | 10 | 3 | 16 | 9 | 3 | ||||||||||||||||||||
|
| 0.754 | 0.389 | 0.523 | 0.644 | 0.568 | 0.986 | 0.198 | 0.067 | 0.090 | 0.095 | 0.614 | 0.538 | 0.656 | 0.476 | 0.617 | 0.596 | 0.686 | 0.538 | |||||||||||||||||
| small cell cancer | 14 | 28 | 15 | 7 | 17 | 33 | 34 | 20 | 3 | 27 | 25 | 4 | 29 | 20 | 8 | ||||||||||||||||||||
| squamous carcinoma | 14 | 20 | 3 | 3 | 13 | 21 | 15 | 15 | 7 | 19 | 13 | 5 | 22 | 11 | 4 | ||||||||||||||||||||
| adenocarcinoma | 29 | 54 | 12 | 7 | 33 | 56 | 41 | 45 | 9 | 53 | 35 | 7 | 50 | 38 | 8 | ||||||||||||||||||||
The interaction of ERCC1 and ERCC5 polymorphisms in the risk of lung cancer
| ERCC1 rs735482 | ERCC1 rs11615 | ERCC1 rs3212986 | ERCC5 rs4771436 | ERCC5 rs1047768 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CC | CA+AA | GG | GA+AA | AA | CA+CC | GG | GT+TT | CC | CT+TT | |||
|
| ||||||||||||
| CC | Case/Control | / | / | / | / | / | / | / | / | / | / | |
| OR (95%CI) | / | / | / | / | / | / | / | / | / | / | ||
| CA+AA | Case/Control | / | / | / | / | / | / | / | / | / | / | |
| OR (95%CI) | / | / | / | / | / | / | / | / | / | / | ||
| / | / | / | / | / | ||||||||
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| GG | Case/Control | 27/71 | 87/154 | / | / | / | / | / | / | / | / | |
| OR (95%CI) | 1 (Ref) | 1.21 (0.83,1.76) | / | / | / | / | / | / | / | / | ||
| GA+AA | Case/Control | 4/9 | 78/166 | / | / | / | / | / | / | / | / | |
| OR (95%CI) | 0.96 (0.29,3.21) | 0.69 (0.18,2.56) | / | / | / | / | / | / | / | / | ||
| P=0.574 | / | / | / | / | ||||||||
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| AA | Case/Control | 0/0 | 21/36 | 21/36 | 0/0 | / | / | / | / | / | / | |
| OR (95%CI) | 1 (Ref) | 1.16 (0.65,2.07) | 1 (Ref) | 1.18 (0.65,2.14) | / | / | / | / | / | / | ||
| CA+CC | Case/Control | 31/78 | 144/281 | 94/185 | 84/174 | / | / | / | / | / | / | |
| OR (95%CI) | 0.76 (0.48,1.21) | NA | 1.04 (0.73,1.50) | NA | / | / | / | / | / | / | ||
| 0.608 | 0.583 | / | / | / | ||||||||
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| ||||||||||||
| GG | Case/Control | 1/6 | 15/18 | 6/16 | 10/8 | 1/1 | 15/23 | / | / | / | / | |
| OR (95%CI) | 1 (Ref) | 1.64 (0.80,3.36) | 1 (Ref) | 2.75 (1.04,7.25) | 1 (Ref) | 1.33 (0.68,2.63) | / | / | / | / | ||
| GT+TT | Case/Control | 29/73 | 149/299 | 107/206 | 75/166 | 20/34 | 161/333 | / | / | / | / | |
| OR (95%CI) | 0.78 (0.48,1.25) | 0.26 (0.03,2.24) | 1.14 (0.80,1.64) | 2.60 (0.07,1.02) | 1.25 (0.70,2.25) | 1.28 (0.07,23.59) | / | / | / | / | ||
| 0.247 | 0.054 | 0.868 | / | / | ||||||||
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| CC | Case/Control | 5/7 | 18/29 | 12/23 | 11/13 | 3/5 | 20/31 | 0/0 | 23/36 | / | / | |
| OR (95%CI) | 1 (Ref) | 1.19 (0.64,2.22) | 1 (Ref) | 1.78 (0.76.4.16) | 1 (Ref) | 1.31 (0.72,2.37) | 1 (Ref) | 1.32 (0.75,2.30) | / | / | ||
| CT+TT | Case/Control | 26/72 | 147/288 | 103/201 | 74/159 | 18/31 | 158/324 | 16/24 | 159/332 | / | / | |
| OR (95%CI) | 0.69 (0.42,1.13) | 1.70 (0.43,6.77) | 1.09 (0.76,1.57) | 0.57 (0.19,1.77) | 1.23 (0.66,2.26) | 0.76 (0.15,3.99) | 1.38 (0.71,2.67) | NA | / | / | ||
| 0.454 | 0.332 | 0.745 | 0.345 | / | ||||||||
Epistatic effect analysis of ERCC1 and ERCC5 polymorphisms with lung cancer risk
| SNP1 | SNP2 | SNP3 | CON vs CA | |
|---|---|---|---|---|
| OR (95%CI) | ||||
| rs735482 | rs11615 | rs3212986 | 0.897 | 1.04 (0.56,1.92) |
| rs735482 | rs11615 | rs4771436 | 0.323 | 1.39 (0.72,2.69) |
| rs735482 | rs11615 | rs1047768 | 0.307 | 1.34 (0.77,2.33) |
| rs735482 | rs3212986 | rs4771436 | 0.333 | 1.39 (0.72,2.68) |
| rs735482 | rs3212986 | rs1047768 | 0.337 | 1.31 (0.75,2.29) |
| rs11615 | rs3212986 | rs4771436 | 0.345 | 1.37 (0.71,2.64) |
| rs11615 | rs3212986 | rs1047768 | 0.382 | 1.28 (0.74,2.23) |
| rs3212986 | rs4771436 | rs1047768 | 0.339 | 1.31 (0.75,2.29) |
Haplotype-base risk prediction of SNPs in ERCC1 and ERCC5 genes for lung cancer
| Gene | SNPs | Haplotype | Modela | F value | T value | OR | P value |
|---|---|---|---|---|---|---|---|
| ERCC1 | rs4771436-rs1047768 | TC | Unadjusted | 0.297 | 0.011 | 0.986 | 0.917 |
| Adjusted | 0.297 | 0.139 | 1.070 | 0.709 | |||
| rs4771436-rs1047768 | GT | Unadjusted | 0.271 | 0.103 | 1.050 | 0.748 | |
| Adjusted | 0.271 | 0.056 | 0.954 | 0.813 | |||
| rs4771436-rs1047768 | TT | Unadjusted | 0.430 | 0.021 | 0.982 | 0.885 | |
| Adjusted | 0.430 | 0.015 | 0.979 | 0.903 | |||
| ERCC5 | rs735482-rs11615 | CA | Unadjusted | 0.021 | 0.027 | 1.090 | 0.869 |
| Adjusted | 0.021 | 0.024 | 1.120 | 0.877 | |||
| rs735482-rs11615 | AA | Unadjusted | 0.230 | 0.059 | 1.040 | 0.808 | |
| Adjusted | 0.230 | 0.301 | 0.893 | 0.583 | |||
| rs735482-rs11615 | CG | Unadjusted | 0.417 | 0.546 | 0.909 | 0.460 | |
| Adjusted | 0.417 | 0.056 | 0.957 | 0.813 | |||
| rs735482-rs11615 | AG | Unadjusted | 0.332 | 0.245 | 1.070 | 0.621 | |
| Adjusted | 0.332 | 0.484 | 1.140 | 0.486 | |||
| ERCC5 | rs3212986-rs11615 | CA | Unadjusted | 0.253 | 0.043 | 1.030 | 0.835 |
| Adjusted | 0.253 | 0.307 | 0.896 | 0.580 | |||
| rs3212986-rs11615 | AG | Unadjusted | 0.311 | 0.034 | 1.020 | 0.855 | |
| Adjusted | 0.311 | 1.030 | 0.030 | 0.863 | |||
| rs3212986-rs11615 | CG | Unadjusted | 0.437 | 0.131 | 0.955 | 0.718 | |
| Adjusted | 0.437 | 0.117 | 1.060 | 0.732 |