| Literature DB >> 30116588 |
Subhrajyoti Bhandary1, Yarabhally R Girish2, Katharigatta N Venugopala3, Deepak Chopra1.
Abstract
The title compound, C15<span class="Species">H13N3O2S, crystallizes in the monoclinic class="Chemical">space group P21/n and its mol-ecular conformation is stabilized via intra-molecular C-H⋯O and C-H⋯N contacts. The supra-molecular structure is mainly governed by C-H⋯N <class="Chemical">span class="Chemical">hydrogen-bonded centrosymmetric dimers, C-H⋯O and C-H⋯S hydrogen bonds and S⋯π and π-π stacking inter-actions which, together, lead to the formation of a layered crystal packing. The inter-molecular inter-actions were further evaluated through the mol-ecular electrostatic potential map and Hirshfeld fingerprint analysis.Entities:
Keywords: 1,2,3-triazole; MESP; crystal structure; fingerprint plot; hydrogen bonding; molecular electrostatic potential
Year: 2018 PMID: 30116588 PMCID: PMC6073004 DOI: 10.1107/S2056989018010654
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The asymmetric unit of compound 1 highlighting the intramolecular C—H⋯O and C—H⋯N contacts. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C11—H11⋯N1 | 0.95 | 2.41 | 2.950 (2) | 116 |
| C2—H2⋯O2 | 0.95 | 2.42 | 2.961 (2) | 113 |
| C3—H3⋯S1i | 0.95 | 2.96 | 3.810 (2) | 149 |
| C15—H15 | 0.98 | 2.98 | 3.828 (3) | 146 |
| C15—H15 | 0.98 | 2.73 | 3.490 (3) | 135 |
| C12—H12⋯N1iv | 0.95 | 2.95 | 3.768 (2) | 145 |
| C13—H13⋯O2v | 0.95 | 2.38 | 3.191 (2) | 143 |
| C14—H14 | 0.98 | 2.67 | 3.230 (2) | 117 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .
Figure 2Crystal packing of 1 showing the formation of molecular sheets via two types of centrosymmetric C—H⋯N dimers (shaded in light yellow and green), forming ribbons connected through C—H⋯O and S⋯C(π) interactions.
Figure 3Stacking of hydrogen-bonded molecular sheets via π–π interactions (dotted lines) in compound 1. Hydrogen atoms are omitted for clarity.
Figure 4MESP of compound 1 mapped over the Hirshfeld surface with a scale of −0.03 a.u. (red) through 0.00 (white) to +0.03 a.u. (blue). The ESP values (in a.u.) for the centre of each ring are given.
Figure 5Two-dimensional full fingerprint plots and decomposed fingerprint plots over the Hirshfeld surface for various intermolecular atom–atom contacts in compound 1. The numbers in red indicate the percentage contributions of each contact.
Experimental details
| Crystal data | |
| Chemical formula | C15H13N3O2S |
|
| 299.34 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 8.5851 (10), 16.8986 (19), 9.3455 (11) |
| β (°) | 92.465 (4) |
|
| 1354.6 (3) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.25 |
| Crystal size (mm) | 0.30 × 0.10 × 0.06 |
| Data collection | |
| Diffractometer | Bruker APEXII D8 Venture CMOS |
| Absorption correction | Multi-scan ( |
|
| 0.619, 0.746 |
| No. of measured, independent and observed [ | 17149, 3962, 2914 |
|
| 0.065 |
| (sin θ/λ)max (Å−1) | 0.705 |
| Refinement | |
|
| 0.053, 0.114, 1.03 |
| No. of reflections | 3962 |
| No. of parameters | 192 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.46, −0.53 |
Computer programs: APEX2 and SAINT (Bruker, 2012 ▸), SIR2014 (Burla et al., 2015 ▸), SHELXL2018 (Sheldrick, 2015 ▸), Mercury (Macrae et al., 2006 ▸), WinGX (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C15H13N3O2S | |
| Monoclinic, | Mo |
| Cell parameters from 6642 reflections | |
| θ = 2.4–30.0° | |
| µ = 0.25 mm−1 | |
| β = 92.465 (4)° | |
| Plate, yellow | |
| 0.30 × 0.10 × 0.06 mm |
| Bruker APEXII D8 Venture CMOS diffractometer | 2914 reflections with |
| φ and ω scans | |
| Absorption correction: multi-scan (SADABS; Bruker, 2012) | θmax = 30.1°, θmin = 2.4° |
| 17149 measured reflections | |
| 3962 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3962 reflections | Δρmax = 0.46 e Å−3 |
| 192 parameters | Δρmin = −0.53 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| S1 | 0.22992 (6) | 0.20914 (3) | 0.39316 (5) | 0.01627 (13) | |
| O1 | 1.18053 (15) | 0.18243 (8) | 0.81322 (14) | 0.0166 (3) | |
| O2 | 0.48083 (16) | 0.18611 (8) | 0.60466 (16) | 0.0200 (3) | |
| N1 | 0.35646 (18) | −0.00987 (9) | 0.68224 (18) | 0.0160 (3) | |
| N3 | 0.57606 (18) | −0.03357 (10) | 0.81538 (18) | 0.0158 (3) | |
| N2 | 0.43569 (18) | −0.05846 (9) | 0.76814 (18) | 0.0162 (3) | |
| C1 | 0.7388 (2) | 0.08137 (10) | 0.7775 (2) | 0.0130 (4) | |
| C11 | 0.1653 (2) | 0.06385 (11) | 0.4486 (2) | 0.0137 (4) | |
| H11 | 0.167530 | 0.012226 | 0.488904 | 0.016* | |
| C4 | 1.0365 (2) | 0.14778 (10) | 0.8101 (2) | 0.0130 (4) | |
| C3 | 0.9476 (2) | 0.15862 (11) | 0.6832 (2) | 0.0132 (4) | |
| H3 | 0.988464 | 0.188552 | 0.607394 | 0.016* | |
| C7 | 0.5901 (2) | 0.03848 (11) | 0.7557 (2) | 0.0132 (4) | |
| C5 | 0.9775 (2) | 0.10385 (11) | 0.9210 (2) | 0.0150 (4) | |
| H5 | 1.037167 | 0.096550 | 1.007982 | 0.018* | |
| C10 | 0.2700 (2) | 0.12300 (11) | 0.4876 (2) | 0.0128 (4) | |
| C6 | 0.8294 (2) | 0.07061 (11) | 0.9028 (2) | 0.0147 (4) | |
| H6 | 0.789370 | 0.039832 | 0.977967 | 0.018* | |
| C2 | 0.8005 (2) | 0.12602 (11) | 0.6675 (2) | 0.0131 (4) | |
| H2 | 0.740456 | 0.134022 | 0.580881 | 0.016* | |
| C8 | 0.4519 (2) | 0.05345 (11) | 0.6724 (2) | 0.0138 (4) | |
| C9 | 0.4044 (2) | 0.12489 (11) | 0.5897 (2) | 0.0141 (4) | |
| C15 | 1.2758 (2) | 0.17414 (14) | 0.9413 (2) | 0.0245 (5) | |
| H15A | 1.224395 | 0.199444 | 1.020945 | 0.037* | |
| H15B | 1.376982 | 0.199448 | 0.928427 | 0.037* | |
| H15C | 1.291563 | 0.117828 | 0.962413 | 0.037* | |
| C12 | 0.0541 (2) | 0.08913 (12) | 0.3416 (2) | 0.0160 (4) | |
| H12 | −0.026154 | 0.056184 | 0.301494 | 0.019* | |
| C13 | 0.0753 (2) | 0.16613 (12) | 0.3025 (2) | 0.0173 (4) | |
| H13 | 0.011053 | 0.192791 | 0.232674 | 0.021* | |
| C14 | 0.3821 (2) | −0.13873 (11) | 0.7969 (2) | 0.0213 (4) | |
| H14A | 0.273221 | −0.144368 | 0.762375 | 0.032* | |
| H14B | 0.390158 | −0.148830 | 0.900188 | 0.032* | |
| H14C | 0.446872 | −0.176823 | 0.747341 | 0.032* |
| S1 | 0.0164 (2) | 0.0123 (2) | 0.0201 (3) | −0.00008 (18) | 0.00098 (18) | 0.00335 (19) |
| O1 | 0.0124 (6) | 0.0188 (7) | 0.0183 (7) | −0.0030 (5) | −0.0029 (5) | 0.0017 (6) |
| O2 | 0.0164 (7) | 0.0107 (6) | 0.0325 (8) | −0.0021 (5) | −0.0028 (6) | 0.0009 (6) |
| N1 | 0.0151 (8) | 0.0118 (7) | 0.0209 (9) | 0.0003 (6) | −0.0009 (7) | 0.0019 (7) |
| N3 | 0.0124 (8) | 0.0154 (8) | 0.0195 (8) | −0.0002 (6) | −0.0003 (6) | 0.0005 (7) |
| N2 | 0.0135 (8) | 0.0125 (8) | 0.0223 (9) | −0.0006 (6) | −0.0013 (7) | 0.0036 (7) |
| C1 | 0.0136 (9) | 0.0092 (8) | 0.0162 (10) | 0.0008 (7) | 0.0014 (7) | −0.0018 (7) |
| C11 | 0.0150 (9) | 0.0120 (8) | 0.0143 (9) | 0.0017 (7) | 0.0010 (7) | −0.0010 (7) |
| C4 | 0.0123 (8) | 0.0094 (8) | 0.0173 (9) | 0.0006 (7) | 0.0001 (7) | −0.0019 (7) |
| C3 | 0.0143 (9) | 0.0117 (8) | 0.0136 (9) | 0.0019 (7) | 0.0019 (7) | −0.0002 (7) |
| C7 | 0.0139 (9) | 0.0110 (8) | 0.0148 (9) | 0.0012 (7) | 0.0020 (7) | −0.0002 (7) |
| C5 | 0.0143 (9) | 0.0150 (9) | 0.0154 (9) | 0.0009 (7) | −0.0012 (7) | 0.0002 (7) |
| C10 | 0.0121 (9) | 0.0105 (8) | 0.0160 (9) | 0.0017 (7) | 0.0028 (7) | 0.0008 (7) |
| C6 | 0.0173 (9) | 0.0123 (9) | 0.0145 (9) | −0.0005 (7) | 0.0022 (7) | 0.0008 (7) |
| C2 | 0.0132 (9) | 0.0124 (8) | 0.0136 (9) | 0.0032 (7) | −0.0004 (7) | −0.0010 (7) |
| C8 | 0.0138 (9) | 0.0099 (8) | 0.0178 (10) | −0.0005 (7) | 0.0009 (7) | −0.0010 (7) |
| C9 | 0.0115 (9) | 0.0116 (8) | 0.0193 (10) | 0.0012 (7) | 0.0028 (7) | −0.0015 (7) |
| C15 | 0.0189 (10) | 0.0338 (12) | 0.0203 (11) | −0.0080 (9) | −0.0066 (8) | 0.0034 (9) |
| C12 | 0.0144 (9) | 0.0170 (9) | 0.0164 (10) | −0.0014 (7) | −0.0015 (7) | −0.0028 (8) |
| C13 | 0.0160 (9) | 0.0204 (10) | 0.0156 (10) | 0.0025 (7) | 0.0000 (7) | −0.0005 (8) |
| C14 | 0.0199 (10) | 0.0116 (9) | 0.0322 (12) | −0.0030 (8) | −0.0010 (9) | 0.0070 (8) |
| S1—C13 | 1.706 (2) | C3—C2 | 1.380 (3) |
| S1—C10 | 1.7292 (19) | C3—H3 | 0.9500 |
| O1—C4 | 1.368 (2) | C7—C8 | 1.413 (3) |
| O1—C15 | 1.427 (2) | C5—C6 | 1.394 (3) |
| O2—C9 | 1.230 (2) | C5—H5 | 0.9500 |
| N1—N2 | 1.317 (2) | C10—C9 | 1.466 (3) |
| N1—C8 | 1.353 (2) | C6—H6 | 0.9500 |
| N3—N2 | 1.334 (2) | C2—H2 | 0.9500 |
| N3—C7 | 1.347 (2) | C8—C9 | 1.481 (3) |
| N2—C14 | 1.461 (2) | C15—H15A | 0.9800 |
| C1—C6 | 1.390 (3) | C15—H15B | 0.9800 |
| C1—C2 | 1.398 (3) | C15—H15C | 0.9800 |
| C1—C7 | 1.475 (3) | C12—C13 | 1.365 (3) |
| C11—C10 | 1.383 (3) | C12—H12 | 0.9500 |
| C11—C12 | 1.419 (3) | C13—H13 | 0.9500 |
| C11—H11 | 0.9500 | C14—H14A | 0.9800 |
| C4—C5 | 1.388 (3) | C14—H14B | 0.9800 |
| C4—C3 | 1.394 (3) | C14—H14C | 0.9800 |
| C13—S1—C10 | 91.62 (9) | C1—C6—H6 | 119.2 |
| C4—O1—C15 | 117.45 (15) | C5—C6—H6 | 119.2 |
| N2—N1—C8 | 103.66 (15) | C3—C2—C1 | 120.72 (17) |
| N2—N3—C7 | 104.09 (15) | C3—C2—H2 | 119.6 |
| N1—N2—N3 | 116.16 (15) | C1—C2—H2 | 119.6 |
| N1—N2—C14 | 122.16 (16) | N1—C8—C7 | 108.49 (16) |
| N3—N2—C14 | 121.29 (16) | N1—C8—C9 | 121.73 (16) |
| C6—C1—C2 | 118.34 (17) | C7—C8—C9 | 129.73 (17) |
| C6—C1—C7 | 120.11 (17) | O2—C9—C10 | 119.57 (17) |
| C2—C1—C7 | 121.13 (17) | O2—C9—C8 | 119.53 (17) |
| C10—C11—C12 | 112.23 (17) | C10—C9—C8 | 120.88 (16) |
| C10—C11—H11 | 123.9 | O1—C15—H15A | 109.5 |
| C12—C11—H11 | 123.9 | O1—C15—H15B | 109.5 |
| O1—C4—C5 | 124.87 (17) | H15A—C15—H15B | 109.5 |
| O1—C4—C3 | 115.02 (17) | O1—C15—H15C | 109.5 |
| C5—C4—C3 | 120.10 (17) | H15A—C15—H15C | 109.5 |
| C2—C3—C4 | 120.21 (18) | H15B—C15—H15C | 109.5 |
| C2—C3—H3 | 119.9 | C13—C12—C11 | 112.45 (17) |
| C4—C3—H3 | 119.9 | C13—C12—H12 | 123.8 |
| N3—C7—C8 | 107.60 (16) | C11—C12—H12 | 123.8 |
| N3—C7—C1 | 118.64 (16) | C12—C13—S1 | 112.53 (15) |
| C8—C7—C1 | 133.56 (17) | C12—C13—H13 | 123.7 |
| C4—C5—C6 | 118.99 (17) | S1—C13—H13 | 123.7 |
| C4—C5—H5 | 120.5 | N2—C14—H14A | 109.5 |
| C6—C5—H5 | 120.5 | N2—C14—H14B | 109.5 |
| C11—C10—C9 | 132.22 (17) | H14A—C14—H14B | 109.5 |
| C11—C10—S1 | 111.18 (14) | N2—C14—H14C | 109.5 |
| C9—C10—S1 | 116.60 (13) | H14A—C14—H14C | 109.5 |
| C1—C6—C5 | 121.63 (18) | H14B—C14—H14C | 109.5 |
| C8—N1—N2—N3 | −0.6 (2) | C4—C5—C6—C1 | −1.0 (3) |
| C8—N1—N2—C14 | −173.55 (18) | C4—C3—C2—C1 | −0.4 (3) |
| C7—N3—N2—N1 | 0.5 (2) | C6—C1—C2—C3 | −0.1 (3) |
| C7—N3—N2—C14 | 173.46 (18) | C7—C1—C2—C3 | −172.69 (17) |
| C15—O1—C4—C5 | −1.4 (3) | N2—N1—C8—C7 | 0.5 (2) |
| C15—O1—C4—C3 | 179.19 (17) | N2—N1—C8—C9 | −177.17 (17) |
| O1—C4—C3—C2 | 179.69 (16) | N3—C7—C8—N1 | −0.3 (2) |
| C5—C4—C3—C2 | 0.2 (3) | C1—C7—C8—N1 | 174.3 (2) |
| N2—N3—C7—C8 | −0.1 (2) | N3—C7—C8—C9 | 177.16 (19) |
| N2—N3—C7—C1 | −175.62 (16) | C1—C7—C8—C9 | −8.3 (4) |
| C6—C1—C7—N3 | −30.9 (3) | C11—C10—C9—O2 | 179.7 (2) |
| C2—C1—C7—N3 | 141.55 (18) | S1—C10—C9—O2 | 0.5 (2) |
| C6—C1—C7—C8 | 155.0 (2) | C11—C10—C9—C8 | 1.3 (3) |
| C2—C1—C7—C8 | −32.5 (3) | S1—C10—C9—C8 | −177.88 (14) |
| O1—C4—C5—C6 | −178.95 (17) | N1—C8—C9—O2 | 166.57 (18) |
| C3—C4—C5—C6 | 0.4 (3) | C7—C8—C9—O2 | −10.5 (3) |
| C12—C11—C10—C9 | −178.84 (19) | N1—C8—C9—C10 | −15.0 (3) |
| C12—C11—C10—S1 | 0.4 (2) | C7—C8—C9—C10 | 167.85 (19) |
| C13—S1—C10—C11 | −0.13 (15) | C10—C11—C12—C13 | −0.5 (2) |
| C13—S1—C10—C9 | 179.21 (15) | C11—C12—C13—S1 | 0.4 (2) |
| C2—C1—C6—C5 | 0.8 (3) | C10—S1—C13—C12 | −0.14 (16) |
| C7—C1—C6—C5 | 173.47 (17) |
| H··· | ||||
| C11—H11···N1 | 0.95 | 2.41 | 2.950 (2) | 116 |
| C2—H2···O2 | 0.95 | 2.42 | 2.961 (2) | 113 |
| C3—H3···S1i | 0.95 | 2.96 | 3.810 (2) | 149 |
| C15—H15 | 0.98 | 2.98 | 3.828 (3) | 146 |
| C15—H15 | 0.98 | 2.73 | 3.490 (3) | 135 |
| C12—H12···N1iv | 0.95 | 2.95 | 3.768 (2) | 145 |
| C13—H13···O2v | 0.95 | 2.38 | 3.191 (2) | 143 |
| C14—H14 | 0.98 | 2.67 | 3.230 (2) | 117 |