| Literature DB >> 30116577 |
Keshab M Bairagi1, Vipin B S Kumar1, Subhrajyoti Bhandary2, Katharigatta N Venugopala3, Susanta K Nayak1.
Abstract
The title compounds, 2-iodo-benzamide, C7H6INO (I), and 2-iodo-N-phenyl-benzamide, C13H10INO (II), were both synthesized from 2-iodo-benzoic acid. In the crystal structure of (I), N-H⋯O and hydrogen bonds form two sets of closed rings, generating dimers and tetra-mers. These combine with C-I⋯π(ring) halogen bonds to form sheets of mol-ecules in the bc plane. For (II), N-H⋯O hydrogen bonds form chains along the a-axis direction, while inversion-related C-I⋯π(ring) contacts supported by C-H⋯π(ring) interactions generate sheets of mol-ecules along the ab diagonal.Entities:
Keywords: C—I⋯π(ring) interactions; benzamide; crystal structure; dimer; hydrogen bonds; tetramer
Year: 2018 PMID: 30116577 PMCID: PMC6072987 DOI: 10.1107/S2056989018010162
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of (I) showing the atom numbering with ellipsoids drawn at the 50% probability level.
Figure 2The molecular structure of (II) showing the atom numbering with ellipsoids drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °) for (I)
Cg1 is the centroid of the C2–C7 phenyl ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.86 | 2.11 | 2.951 (2) | 164 |
| N1—H1 | 0.86 | 2.05 | 2.843 (2) | 154 |
| C3—I1⋯ | 2.11 (1) | 3.99 (1) | 5.877 (2) | 148 (1) |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 3Chains of molecules of (I) along the a-axis direction, showing the dimers and tetramers formed by N—H⋯O hydrogen bonds.
Figure 4N—H⋯O and C—I⋯π(ring) contacts forming sheets of molecules of (I) in the bc plane.
Figure 5N—H⋯O hydrogen bonds forming chains of molecules of (II) along the a-axis direction.
Hydrogen-bond geometry (Å, °) for (II)
Cg2 is the centroid of the C8–C13 benzene ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1⋯O1i | 0.88 | 2.15 | 2.942 (2) | 150 |
| C3—I1⋯ | 2.10 (1) | 3.83 (1) | 5.816 (2) | 156 (1) |
| C6—H6⋯ | 0.95 | 2.81 | 3.627 (2) | 144 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 6C—I⋯π(ring) and C—H⋯π(ring) contacts generating sheets of molecules of (II) along the ab diagonal
Experimental details
| (I) | (II) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C7H6INO | C13H10INO |
|
| 247.03 | 323.12 |
| Crystal system, space group | Monoclinic, | Triclinic, |
| Temperature (K) | 296 | 120 |
|
| 5.0531 (2), 11.4478 (5), 13.2945 (5) | 5.1225 (2), 10.4572 (4), 12.2167 (5) |
| α, β, γ (°) | 90, 93.245 (1), 90 | 66.034 (2), 78.882 (2), 85.760 (2) |
|
| 767.81 (5) | 586.76 (4) |
|
| 4 | 2 |
| Radiation type | Mo | Mo |
| μ (mm−1) | 4.10 | 2.71 |
| Crystal size (mm) | 0.23 × 0.22 × 0.21 | 0.23 × 0.22 × 0.21 |
| Data collection | ||
| Diffractometer | Bruker Kappa APEXII DUO | Bruker Kappa APEXII DUO |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.429, 0.456 | 0.546, 0.570 |
| No. of measured, independent and observed [ | 5827, 1504, 1461 | 13292, 2309, 2278 |
|
| 0.021 | 0.018 |
| (sin θ/λ)max (Å−1) | 0.617 | 0.617 |
| Refinement | ||
|
| 0.014, 0.033, 1.16 | 0.017, 0.042, 1.08 |
| No. of reflections | 1504 | 2309 |
| No. of parameters | 92 | 145 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.45, −0.35 | 0.81, −0.48 |
Computer programs: APEX2 and SAINT (Bruker, 2014 ▸), SHELXS14 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), PLATON (Spek, 2009 ▸), Mercury (Macrae et al., 2008 ▸), WinGX (Farrugia, 2012 ▸) and PARST (Nardelli, 1995 ▸).
| C7H6INO | |
| Monoclinic, | Mo |
| Cell parameters from 1504 reflections | |
| θ = 2.3–26.0° | |
| µ = 4.10 mm−1 | |
| β = 93.245 (1)° | |
| Plate, colorless | |
| 0.23 × 0.22 × 0.21 mm |
| Bruker Kappa APEXII DUO diffractometer | 1504 independent reflections |
| Radiation source: fine-focus sealed tube | 1461 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 26.0°, θmin = 2.4° |
| Absorption correction: multi-scan (SADABS; Bruker, 2014) | |
| 5827 measured reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.002 | |
| Δρmax = 0.45 e Å−3 | |
| 1504 reflections | Δρmin = −0.35 e Å−3 |
| 92 parameters | Extinction correction: SHELXL2014 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.0170 (5) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| I1 | 0.14922 (2) | 0.55570 (2) | 0.18090 (2) | 0.01703 (7) | |
| O1 | 0.3073 (3) | 0.43218 (14) | 0.39426 (11) | 0.0177 (3) | |
| N1 | 0.7508 (3) | 0.44020 (16) | 0.41536 (14) | 0.0168 (4) | |
| H1A | 0.7438 | 0.4650 | 0.4762 | 0.020* | |
| H1B | 0.9018 | 0.4297 | 0.3900 | 0.020* | |
| C5 | 0.6303 (4) | 0.2793 (2) | 0.06578 (17) | 0.0219 (5) | |
| H5 | 0.6514 | 0.2473 | 0.0024 | 0.026* | |
| C6 | 0.7846 (4) | 0.23997 (19) | 0.14775 (17) | 0.0202 (5) | |
| H6 | 0.9113 | 0.1824 | 0.1396 | 0.024* | |
| C7 | 0.7504 (4) | 0.28652 (19) | 0.24225 (17) | 0.0165 (4) | |
| H7 | 0.8555 | 0.2598 | 0.2972 | 0.020* | |
| C2 | 0.5610 (4) | 0.37276 (18) | 0.25648 (15) | 0.0125 (4) | |
| C1 | 0.5297 (4) | 0.41830 (18) | 0.36086 (15) | 0.0125 (4) | |
| C4 | 0.4440 (4) | 0.3662 (2) | 0.07746 (16) | 0.0193 (5) | |
| H4 | 0.3416 | 0.3931 | 0.0219 | 0.023* | |
| C3 | 0.4101 (4) | 0.41317 (18) | 0.17218 (16) | 0.0138 (4) |
| I1 | 0.01454 (9) | 0.01736 (10) | 0.01910 (10) | 0.00237 (5) | 0.00030 (5) | 0.00353 (5) |
| O1 | 0.0082 (7) | 0.0300 (9) | 0.0152 (8) | −0.0007 (6) | 0.0019 (5) | −0.0026 (6) |
| N1 | 0.0094 (8) | 0.0280 (11) | 0.0132 (9) | −0.0003 (7) | 0.0021 (6) | −0.0044 (8) |
| C5 | 0.0286 (12) | 0.0200 (11) | 0.0177 (12) | −0.0038 (9) | 0.0070 (9) | −0.0071 (9) |
| C6 | 0.0210 (11) | 0.0125 (11) | 0.0277 (12) | −0.0010 (9) | 0.0085 (9) | −0.0048 (9) |
| C7 | 0.0138 (9) | 0.0140 (10) | 0.0220 (11) | −0.0022 (8) | 0.0024 (8) | 0.0013 (9) |
| C2 | 0.0100 (9) | 0.0122 (10) | 0.0154 (10) | −0.0034 (7) | 0.0019 (7) | −0.0003 (8) |
| C1 | 0.0118 (9) | 0.0117 (9) | 0.0142 (10) | −0.0002 (8) | 0.0015 (7) | 0.0036 (8) |
| C4 | 0.0213 (10) | 0.0226 (12) | 0.0140 (11) | −0.0042 (9) | −0.0002 (8) | −0.0012 (9) |
| C3 | 0.0120 (9) | 0.0122 (10) | 0.0173 (11) | −0.0019 (8) | 0.0025 (8) | 0.0005 (8) |
| I1—C3 | 2.105 (2) | C6—C7 | 1.385 (3) |
| O1—C1 | 1.242 (2) | C6—H6 | 0.9300 |
| N1—C1 | 1.321 (3) | C7—C2 | 1.395 (3) |
| N1—H1A | 0.8600 | C7—H7 | 0.9300 |
| N1—H1B | 0.8600 | C2—C3 | 1.398 (3) |
| C5—C6 | 1.379 (3) | C2—C1 | 1.499 (3) |
| C5—C4 | 1.384 (3) | C4—C3 | 1.389 (3) |
| C5—H5 | 0.9300 | C4—H4 | 0.9300 |
| C1—N1—H1A | 120.0 | C7—C2—C3 | 118.20 (19) |
| C1—N1—H1B | 120.0 | C7—C2—C1 | 118.73 (18) |
| H1A—N1—H1B | 120.0 | C3—C2—C1 | 123.07 (18) |
| C6—C5—C4 | 120.2 (2) | O1—C1—N1 | 122.29 (19) |
| C6—C5—H5 | 119.9 | O1—C1—C2 | 121.37 (18) |
| C4—C5—H5 | 119.9 | N1—C1—C2 | 116.32 (16) |
| C5—C6—C7 | 119.8 (2) | C5—C4—C3 | 120.0 (2) |
| C5—C6—H6 | 120.1 | C5—C4—H4 | 120.0 |
| C7—C6—H6 | 120.1 | C3—C4—H4 | 120.0 |
| C6—C7—C2 | 121.1 (2) | C4—C3—C2 | 120.61 (19) |
| C6—C7—H7 | 119.4 | C4—C3—I1 | 117.38 (16) |
| C2—C7—H7 | 119.4 | C2—C3—I1 | 121.81 (15) |
| C4—C5—C6—C7 | 0.9 (3) | C6—C5—C4—C3 | −0.7 (3) |
| C5—C6—C7—C2 | 0.2 (3) | C5—C4—C3—C2 | −0.6 (3) |
| C6—C7—C2—C3 | −1.5 (3) | C5—C4—C3—I1 | 174.29 (16) |
| C6—C7—C2—C1 | 178.91 (18) | C7—C2—C3—C4 | 1.7 (3) |
| C7—C2—C1—O1 | −135.1 (2) | C1—C2—C3—C4 | −178.75 (18) |
| C3—C2—C1—O1 | 45.3 (3) | C7—C2—C3—I1 | −172.99 (14) |
| C7—C2—C1—N1 | 43.5 (3) | C1—C2—C3—I1 | 6.6 (3) |
| C3—C2—C1—N1 | −136.1 (2) |
| H··· | ||||
| N1—H1 | 0.86 | 2.11 | 2.951 (2) | 164 |
| N1—H1 | 0.86 | 2.05 | 2.843 (2) | 154 |
| C3—I1··· | 2.11 (1) | 3.99 (1) | 5.877 (2) | 148 (1) |
| C13H10INO | |
| Triclinic, | |
| Mo | |
| Cell parameters from 2309 reflections | |
| θ = 1.9–26.0° | |
| α = 66.034 (2)° | µ = 2.71 mm−1 |
| β = 78.882 (2)° | |
| γ = 85.760 (2)° | Plate, colorless |
| 0.23 × 0.22 × 0.21 mm |
| Bruker Kappa APEXII DUO diffractometer | 2309 independent reflections |
| Radiation source: fine-focus sealed tube | 2278 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 26.0°, θmin = 1.9° |
| Absorption correction: multi-scan (SADABS; Bruker, 2014) | |
| 13292 measured reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2309 reflections | Δρmax = 0.81 e Å−3 |
| 145 parameters | Δρmin = −0.48 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| I1 | −0.30400 (3) | 0.03723 (2) | 0.77480 (2) | 0.01972 (6) | |
| O1 | −0.1224 (3) | 0.31161 (18) | 0.51921 (14) | 0.0233 (3) | |
| N1 | 0.3285 (3) | 0.2852 (2) | 0.49180 (16) | 0.0169 (4) | |
| H1 | 0.4668 | 0.2731 | 0.5279 | 0.020* | |
| C1 | 0.0875 (4) | 0.2939 (2) | 0.55727 (19) | 0.0161 (4) | |
| C2 | 0.0968 (4) | 0.2802 (2) | 0.68392 (19) | 0.0148 (4) | |
| C3 | −0.0677 (4) | 0.1861 (2) | 0.7861 (2) | 0.0156 (4) | |
| C4 | −0.0629 (4) | 0.1793 (2) | 0.9014 (2) | 0.0194 (4) | |
| H4 | −0.1751 | 0.1151 | 0.9704 | 0.023* | |
| C5 | 0.1069 (4) | 0.2670 (2) | 0.9157 (2) | 0.0206 (4) | |
| H5 | 0.1091 | 0.2632 | 0.9945 | 0.025* | |
| C6 | 0.2728 (4) | 0.3597 (2) | 0.8154 (2) | 0.0198 (4) | |
| H6 | 0.3893 | 0.4191 | 0.8255 | 0.024* | |
| C7 | 0.2685 (4) | 0.3657 (2) | 0.7005 (2) | 0.0169 (4) | |
| H7 | 0.3838 | 0.4289 | 0.6321 | 0.020* | |
| C8 | 0.3800 (4) | 0.2938 (2) | 0.37055 (19) | 0.0159 (4) | |
| C9 | 0.2215 (4) | 0.3717 (2) | 0.2855 (2) | 0.0180 (4) | |
| H9 | 0.0683 | 0.4185 | 0.3083 | 0.022* | |
| C10 | 0.2897 (4) | 0.3802 (2) | 0.1671 (2) | 0.0191 (4) | |
| H10 | 0.1821 | 0.4334 | 0.1089 | 0.023* | |
| C11 | 0.5124 (4) | 0.3123 (2) | 0.1323 (2) | 0.0203 (4) | |
| H11 | 0.5579 | 0.3190 | 0.0510 | 0.024* | |
| C12 | 0.6677 (4) | 0.2343 (2) | 0.2180 (2) | 0.0209 (5) | |
| H12 | 0.8204 | 0.1873 | 0.1952 | 0.025* | |
| C13 | 0.6024 (4) | 0.2245 (2) | 0.3364 (2) | 0.0192 (4) | |
| H13 | 0.7094 | 0.1703 | 0.3945 | 0.023* |
| I1 | 0.01580 (8) | 0.01876 (9) | 0.02535 (9) | −0.00291 (5) | −0.00378 (6) | −0.00904 (6) |
| O1 | 0.0114 (7) | 0.0402 (10) | 0.0194 (8) | −0.0006 (7) | −0.0035 (6) | −0.0126 (7) |
| N1 | 0.0106 (8) | 0.0271 (10) | 0.0150 (9) | 0.0003 (7) | −0.0026 (7) | −0.0103 (8) |
| C1 | 0.0134 (10) | 0.0183 (10) | 0.0171 (10) | −0.0018 (8) | −0.0013 (8) | −0.0078 (8) |
| C2 | 0.0118 (9) | 0.0171 (10) | 0.0169 (10) | 0.0039 (8) | −0.0035 (8) | −0.0084 (8) |
| C3 | 0.0109 (9) | 0.0172 (10) | 0.0214 (11) | 0.0004 (8) | −0.0028 (8) | −0.0105 (9) |
| C4 | 0.0178 (10) | 0.0221 (11) | 0.0160 (10) | 0.0002 (8) | 0.0004 (8) | −0.0069 (9) |
| C5 | 0.0207 (11) | 0.0270 (12) | 0.0174 (10) | 0.0026 (9) | −0.0042 (8) | −0.0124 (9) |
| C6 | 0.0186 (10) | 0.0216 (11) | 0.0235 (11) | 0.0002 (8) | −0.0063 (9) | −0.0124 (9) |
| C7 | 0.0131 (10) | 0.0180 (10) | 0.0187 (10) | −0.0005 (8) | −0.0013 (8) | −0.0070 (9) |
| C8 | 0.0129 (9) | 0.0206 (10) | 0.0161 (10) | −0.0047 (8) | −0.0003 (8) | −0.0095 (9) |
| C9 | 0.0139 (10) | 0.0213 (11) | 0.0203 (11) | −0.0010 (8) | −0.0018 (8) | −0.0103 (9) |
| C10 | 0.0179 (10) | 0.0220 (11) | 0.0179 (10) | −0.0045 (8) | −0.0046 (8) | −0.0071 (9) |
| C11 | 0.0208 (11) | 0.0247 (11) | 0.0182 (10) | −0.0076 (9) | 0.0010 (8) | −0.0121 (9) |
| C12 | 0.0152 (10) | 0.0256 (12) | 0.0259 (12) | −0.0031 (9) | 0.0014 (9) | −0.0159 (10) |
| C13 | 0.0138 (10) | 0.0244 (11) | 0.0218 (11) | 0.0004 (8) | −0.0046 (8) | −0.0109 (9) |
| I1—C3 | 2.104 (2) | C6—H6 | 0.9500 |
| O1—C1 | 1.225 (3) | C7—H7 | 0.9500 |
| N1—C1 | 1.354 (3) | C8—C13 | 1.392 (3) |
| N1—C8 | 1.420 (3) | C8—C9 | 1.394 (3) |
| N1—H1 | 0.8800 | C9—C10 | 1.388 (3) |
| C1—C2 | 1.505 (3) | C9—H9 | 0.9500 |
| C2—C7 | 1.395 (3) | C10—C11 | 1.388 (3) |
| C2—C3 | 1.399 (3) | C10—H10 | 0.9500 |
| C3—C4 | 1.387 (3) | C11—C12 | 1.388 (3) |
| C4—C5 | 1.390 (3) | C11—H11 | 0.9500 |
| C4—H4 | 0.9500 | C12—C13 | 1.382 (3) |
| C5—C6 | 1.385 (3) | C12—H12 | 0.9500 |
| C5—H5 | 0.9500 | C13—H13 | 0.9500 |
| C6—C7 | 1.384 (3) | ||
| C1—N1—C8 | 126.37 (18) | C6—C7—C2 | 120.8 (2) |
| C1—N1—H1 | 116.8 | C6—C7—H7 | 119.6 |
| C8—N1—H1 | 116.8 | C2—C7—H7 | 119.6 |
| O1—C1—N1 | 124.4 (2) | C13—C8—C9 | 119.80 (19) |
| O1—C1—C2 | 121.64 (19) | C13—C8—N1 | 117.79 (19) |
| N1—C1—C2 | 113.98 (18) | C9—C8—N1 | 122.38 (19) |
| C7—C2—C3 | 118.70 (19) | C10—C9—C8 | 119.4 (2) |
| C7—C2—C1 | 119.60 (19) | C10—C9—H9 | 120.3 |
| C3—C2—C1 | 121.68 (18) | C8—C9—H9 | 120.3 |
| C4—C3—C2 | 120.61 (19) | C11—C10—C9 | 121.1 (2) |
| C4—C3—I1 | 117.07 (16) | C11—C10—H10 | 119.5 |
| C2—C3—I1 | 122.08 (15) | C9—C10—H10 | 119.5 |
| C3—C4—C5 | 119.7 (2) | C10—C11—C12 | 119.0 (2) |
| C3—C4—H4 | 120.1 | C10—C11—H11 | 120.5 |
| C5—C4—H4 | 120.1 | C12—C11—H11 | 120.5 |
| C6—C5—C4 | 120.3 (2) | C13—C12—C11 | 120.7 (2) |
| C6—C5—H5 | 119.9 | C13—C12—H12 | 119.7 |
| C4—C5—H5 | 119.9 | C11—C12—H12 | 119.7 |
| C7—C6—C5 | 119.9 (2) | C12—C13—C8 | 120.1 (2) |
| C7—C6—H6 | 120.1 | C12—C13—H13 | 120.0 |
| C5—C6—H6 | 120.1 | C8—C13—H13 | 120.0 |
| C8—N1—C1—O1 | −0.6 (4) | C5—C6—C7—C2 | 0.6 (3) |
| C8—N1—C1—C2 | 179.69 (19) | C3—C2—C7—C6 | −1.2 (3) |
| O1—C1—C2—C7 | −127.2 (2) | C1—C2—C7—C6 | 177.16 (19) |
| N1—C1—C2—C7 | 52.6 (3) | C1—N1—C8—C13 | −152.1 (2) |
| O1—C1—C2—C3 | 51.1 (3) | C1—N1—C8—C9 | 29.9 (3) |
| N1—C1—C2—C3 | −129.1 (2) | C13—C8—C9—C10 | −0.7 (3) |
| C7—C2—C3—C4 | 0.9 (3) | N1—C8—C9—C10 | 177.34 (19) |
| C1—C2—C3—C4 | −177.47 (19) | C8—C9—C10—C11 | 0.1 (3) |
| C7—C2—C3—I1 | −173.28 (15) | C9—C10—C11—C12 | 0.3 (3) |
| C1—C2—C3—I1 | 8.4 (3) | C10—C11—C12—C13 | −0.1 (3) |
| C2—C3—C4—C5 | 0.1 (3) | C11—C12—C13—C8 | −0.4 (3) |
| I1—C3—C4—C5 | 174.51 (16) | C9—C8—C13—C12 | 0.8 (3) |
| C3—C4—C5—C6 | −0.7 (3) | N1—C8—C13—C12 | −177.3 (2) |
| C4—C5—C6—C7 | 0.4 (3) |
| H··· | ||||
| N1—H1···O1i | 0.88 | 2.15 | 2.942 (2) | 150 |
| C3—I1··· | 2.10 (1) | 3.83 (1) | 5.816 (2) | 156 (1) |
| C6—H6··· | 0.95 | 2.81 | 3.627 (2) | 144 |