Literature DB >> 30107122

Establishing a High-Yielding Cell-Free Protein Synthesis Platform Derived from Vibrio natriegens.

Benjamin J Des Soye, Samuel R Davidson, Matthew T Weinstock1, Daniel G Gibson1, Michael C Jewett.   

Abstract

A new wave of interest in cell-free protein synthesis (CFPS) systems has shown their utility for producing proteins at high titers, establishing genetic regulatory element libraries ( e.g., promoters, ribosome binding sites) in nonmodel organisms, optimizing biosynthetic pathways before implementation in cells, and sensing biomarkers for diagnostic applications. Unfortunately, most previous efforts have focused on a select few model systems, such as Escherichia coli. Broadening the spectrum of organisms used for CFPS promises to better mimic host cell processes in prototyping applications and open up new areas of research. Here, we describe the development and characterization of a facile CFPS platform based on lysates derived from the fast-growing bacterium Vibrio natriegens, which is an emerging host organism for biotechnology. We demonstrate robust preparation of highly active extracts using sonication, without specialized and costly equipment. After optimizing the extract preparation procedure and cell-free reaction conditions, we show synthesis of 1.6 ± 0.05 g/L of superfolder green fluorescent protein in batch mode CFPS, making it competitive with existing E. coli CFPS platforms. To showcase the flexibility of the system, we demonstrate that it can be lyophilized and retain biosynthesis capability, that it is capable of producing antimicrobial peptides, and that our extract preparation procedure can be coupled with the recently described Vmax Express strain in a one-pot system. Finally, to further increase system productivity, we explore a knockout library in which putative negative effectors of CFPS are genetically removed from the source strain. Our V. natriegens-derived CFPS platform is versatile and simple to prepare and use. We expect it will facilitate expansion of CFPS systems into new laboratories and fields for compelling applications in synthetic biology.

Entities:  

Keywords:  TX-TL; Vibrio natriegens; cell-free protein synthesis; genome engineering; protein production; synthetic biology

Mesh:

Substances:

Year:  2018        PMID: 30107122     DOI: 10.1021/acssynbio.8b00252

Source DB:  PubMed          Journal:  ACS Synth Biol        ISSN: 2161-5063            Impact factor:   5.110


  20 in total

1.  Cell-free Protein Expression Using the Rapidly Growing Bacterium Vibrio natriegens.

Authors:  Daniel J Wiegand; Henry H Lee; Nili Ostrov; George M Church
Journal:  J Vis Exp       Date:  2019-03-14       Impact factor: 1.355

2.  Preparation and Screening of Cell-Free Extract from Nongrowing Escherichia coli A19 Cells.

Authors:  Florian Hiering; Jurek Failmezger; Martin Siemann-Herzberg
Journal:  Methods Mol Biol       Date:  2022

3.  Genome-Scale Modeling and Systems Metabolic Engineering of Vibrio natriegens for the Production of 1,3-Propanediol.

Authors:  Ye Zhang; Dehua Liu; Zhen Chen
Journal:  Methods Mol Biol       Date:  2023

4.  An efficient cell-free protein synthesis platform for producing proteins with pyrrolysine-based noncanonical amino acids.

Authors:  Arnaz Ranji Charna; Benjamin J Des Soye; Ioanni Ntai; Neil L Kelleher; Michael C Jewett
Journal:  Biotechnol J       Date:  2022-06-09       Impact factor: 5.726

5.  Traditional protocols and optimization methods lead to absent expression in a mycoplasma cell-free gene expression platform.

Authors:  Andrei Sakai; Christopher R Deich; Frank H T Nelissen; Aafke J Jonker; Daniela M de C Bittencourt; Christopher P Kempes; Kim S Wise; Hans A Heus; Wilhelm T S Huck; Katarzyna P Adamala; John I Glass
Journal:  Synth Biol (Oxf)       Date:  2022-05-21

6.  A Hybrid Extracellular Electron Transfer Pathway Enhances the Survival of Vibrio natriegens.

Authors:  Bridget E Conley; Matthew T Weinstock; Daniel R Bond; Jeffrey A Gralnick
Journal:  Appl Environ Microbiol       Date:  2020-09-17       Impact factor: 4.792

7.  Deconstructing Cell-Free Extract Preparation for in Vitro Activation of Transcriptional Genetic Circuitry.

Authors:  Adam D Silverman; Nancy Kelley-Loughnane; Julius B Lucks; Michael C Jewett
Journal:  ACS Synth Biol       Date:  2019-01-29       Impact factor: 5.110

Review 8.  Exploring the Potential of Cell-Free Protein Synthesis for Extending the Abilities of Biological Systems.

Authors:  Khushal Khambhati; Gargi Bhattacharjee; Nisarg Gohil; Darren Braddick; Vishwesh Kulkarni; Vijai Singh
Journal:  Front Bioeng Biotechnol       Date:  2019-10-11

Review 9.  Cell-Free Protein Synthesis: A Promising Option for Future Drug Development.

Authors:  Srujan Kumar Dondapati; Marlitt Stech; Anne Zemella; Stefan Kubick
Journal:  BioDrugs       Date:  2020-06       Impact factor: 5.807

10.  Development and comparison of cell-free protein synthesis systems derived from typical bacterial chassis.

Authors:  Liyuan Zhang; Xiaomei Lin; Ting Wang; Wei Guo; Yuan Lu
Journal:  Bioresour Bioprocess       Date:  2021-07-06
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