Literature DB >> 32700540

Pulsed Third-Spin-Assisted Recoupling NMR for Obtaining Long-Range 13C-13C and 15N-13C Distance Restraints.

Martin D Gelenter1, Aurelio J Dregni1, Mei Hong1.   

Abstract

We present a class of pulsed third-spin-assisted recoupling (P-TSAR) magic-angle-spinning solid-state NMR techniques that achieve efficient polarization transfer over long distances to provide important restraints for structure determination. These experiments utilize second-order cross terms between strong 1H-13C and 1H-15N dipolar couplings to achieve 13C-13C and 15N-13C polarization transfer, similar to the principle of continuous-wave (CW) TSAR experiments. However, in contrast to the CW-TSAR experiments, these P-TSAR experiments require much less radiofrequency (rf) energy and allow a much simpler routine for optimizing the rf field strength. We call the technique PULSAR (pulsed proton-assisted recoupling) for homonuclear spin pairs. For heteronuclear spin pairs, we improve the recently introduced PERSPIRATIONCP (proton-enhanced rotor-echo short pulse irradiation cross-polarization) experiment by shifting the pulse positions and removing the z-filters, which significantly broaden the bandwidth and increase the efficiency of polarization transfer. We demonstrate the PULSAR and PERSPIRATIONCP techniques on the model protein GB1 and found cross peaks for distances as long as 10 and 8 Å for 13C-13C and 15N-13C spin pairs, respectively. We then apply these methods to the amyloid fibrils formed by the peptide hormone glucagon and show that long-range correlation peaks are readily observed to constrain intermolecular packing in this cross-β fibril. We provide an analytical model for the PULSAR and PERSPIRATIONCP experiments to explain the measured and simulated chemical shift dependence and pulse flip angle dependence of polarization transfer. These two techniques are useful for measuring long-range distance restraints to determine the three-dimensional structures of proteins and other biological macromolecules.

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Year:  2020        PMID: 32700540      PMCID: PMC8324326          DOI: 10.1021/acs.jpcb.0c04574

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  37 in total

1.  Ultrahigh resolution protein structures using NMR chemical shift tensors.

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2.  Atomic Resolution Structure of Monomorphic Aβ42 Amyloid Fibrils.

Authors:  Michael T Colvin; Robert Silvers; Qing Zhe Ni; Thach V Can; Ivan Sergeyev; Melanie Rosay; Kevin J Donovan; Brian Michael; Joseph Wall; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2016-07-14       Impact factor: 15.419

3.  In vitro 0N4R tau fibrils contain a monomorphic β-sheet core enclosed by dynamically heterogeneous fuzzy coat segments.

Authors:  Aurelio J Dregni; Venkata S Mandala; Haifan Wu; Matthew R Elkins; Harrison K Wang; Ivan Hung; William F DeGrado; Mei Hong
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-29       Impact factor: 11.205

4.  Methylammonium lead chloride: A sensitive sample for an accurate NMR thermometer.

Authors:  Guy M Bernard; Atul Goyal; Mark Miskolzie; Ryan McKay; Qichao Wu; Roderick E Wasylishen; Vladimir K Michaelis
Journal:  J Magn Reson       Date:  2017-08-08       Impact factor: 2.229

5.  Magic-angle spinning solid-state NMR spectroscopy of the beta1 immunoglobulin binding domain of protein G (GB1): 15N and 13C chemical shift assignments and conformational analysis.

Authors:  W Trent Franks; Donghua H Zhou; Benjamin J Wylie; Brian G Money; Daniel T Graesser; Heather L Frericks; Gurmukh Sahota; Chad M Rienstra
Journal:  J Am Chem Soc       Date:  2005-09-07       Impact factor: 15.419

6.  Conformational states of glucagon.

Authors:  W B Gratzer; E Bailey; G H Beaven
Journal:  Biochem Biophys Res Commun       Date:  1967-09-27       Impact factor: 3.575

7.  Proton assisted recoupling and protein structure determination.

Authors:  Gaël De Paëpe; Józef R Lewandowski; Antoine Loquet; Anja Böckmann; Robert G Griffin
Journal:  J Chem Phys       Date:  2008-12-28       Impact factor: 3.488

8.  Protein backbone and sidechain torsion angles predicted from NMR chemical shifts using artificial neural networks.

Authors:  Yang Shen; Ad Bax
Journal:  J Biomol NMR       Date:  2013-06-02       Impact factor: 2.835

9.  Solid-state NMR structure of a pathogenic fibril of full-length human α-synuclein.

Authors:  Marcus D Tuttle; Gemma Comellas; Andrew J Nieuwkoop; Dustin J Covell; Deborah A Berthold; Kathryn D Kloepper; Joseph M Courtney; Jae K Kim; Alexander M Barclay; Amy Kendall; William Wan; Gerald Stubbs; Charles D Schwieters; Virginia M Y Lee; Julia M George; Chad M Rienstra
Journal:  Nat Struct Mol Biol       Date:  2016-03-28       Impact factor: 15.369

10.  Global response of diacylglycerol kinase towards substrate binding observed by 2D and 3D MAS NMR.

Authors:  Kristin Möbius; Sina Kazemi; Peter Güntert; Andreas Jakob; Alexander Heckel; Johanna Becker-Baldus; Clemens Glaubitz
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  2 in total

Review 1.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

Review 2.  From Angstroms to Nanometers: Measuring Interatomic Distances by Solid-State NMR.

Authors:  Alexander A Shcherbakov; João Medeiros-Silva; Nhi Tran; Martin D Gelenter; Mei Hong
Journal:  Chem Rev       Date:  2021-10-25       Impact factor: 72.087

  2 in total

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