Literature DB >> 30102039

Effect of Memory and Active Forces on Transition Path Time Distributions.

E Carlon1, H Orland2,3, T Sakaue4,5, C Vanderzande1,6.   

Abstract

An analytical expression is derived for the transition path time distribution for a one-dimensional particle crossing of a parabolic barrier. Two cases are analyzed: (i) a non-Markovian process described by a generalized Langevin equation with a power-law memory kernel and (ii) a Markovian process with a noise violating the fluctuation-dissipation theorem, modeling the stochastic dynamics generated by active forces. In case i, we show that the anomalous dynamics strongly affect the short time behavior of the distributions, but this happens only for very rare events not influencing the overall statistics. At long times the decay is always exponential, in disagreement with a recent study suggesting a stretched exponential decay. In case ii, the active forces do not substantially modify the short time behavior of the distribution but do lead to an overall decrease of the average transition path time. These findings offer some novel insights, useful for the analysis of experiments of transition path times in (bio)molecular systems.

Mesh:

Year:  2018        PMID: 30102039     DOI: 10.1021/acs.jpcb.8b06379

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  4 in total

1.  Exact Solutions for Distributions of First-Passage, Direct-Transit, and Looping Times in Symmetric Cusp Potential Barriers and Wells.

Authors:  Alexander M Berezhkovskii; Leonardo Dagdug; Sergey M Bezrukov
Journal:  J Phys Chem B       Date:  2019-04-23       Impact factor: 2.991

2.  Broad distributions of transition-path times are fingerprints of multidimensionality of the underlying free energy landscapes.

Authors:  Rohit Satija; Alexander M Berezhkovskii; Dmitrii E Makarov
Journal:  Proc Natl Acad Sci U S A       Date:  2020-10-21       Impact factor: 11.205

3.  Estimating transition path times and shapes from single-molecule photon trajectories: A simulation analysis.

Authors:  Grace H Taumoefolau; Robert B Best
Journal:  J Chem Phys       Date:  2021-03-21       Impact factor: 3.488

4.  Enhancing transport by shaping barriers.

Authors:  Max Innerbichler; Christoph Dellago
Journal:  Proc Natl Acad Sci U S A       Date:  2020-01-14       Impact factor: 11.205

  4 in total

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