| Literature DB >> 30101434 |
Wieke W Kremer1, Marjolein Van Zummeren1, Putri W Novianti1,2, Karin L Richter3, Wina Verlaat1, Peter Jf Snijders1, Daniëlle Am Heideman1, Renske Dm Steenbergen1, Greta Dreyer4, Chris Jlm Meijer1.
Abstract
INTRODUCTION: To evaluate the performance of hypermethylation analysis of ASCL1, LHX8 and ST6GALNAC5 in physician-taken cervical scrapes for detection of cervical cancer and cervical intraepithelial neoplasia (CIN) grade 3 in women living with HIV (WLHIV) in South Africa.Entities:
Keywords: DNA Methylation Marker Testing; Early Detection of Cancer; High-grade Cervical Intraepithelial Neoplasia; Human Immuno-deficiency Virus; Human Papillomavirus; Uterine Cervical Neoplasms
Mesh:
Substances:
Year: 2018 PMID: 30101434 PMCID: PMC6088247 DOI: 10.1002/jia2.25165
Source DB: PubMed Journal: J Int AIDS Soc ISSN: 1758-2652 Impact factor: 5.396
Figure 1Study flow chart. CIN, cervical intraepithelial neoplasia; CxCa, cervical carcinomas; WLHIV, women living with HIV.
Figure 2Methylation levels increase with severity of underlying cervical disease. Methylation levels of ASCL1 (A), LHX8 (B) and ST6GALNAC5 (C) represented by the log10‐transformed Ct ratios (y‐axis) in the different histology subgroups (x‐axis) from the cohort of WLHIV and the referral population combined. CIN, cervical intraepithelial neoplasia; CxCa, cervical carcinomas. *p < 0.05; **p < 0.01; ***p < 0.001; ns, not significant.
Figure 3Comparing methylation levels between HIV seronegative and HIV seropositive women. Methylation levels of ASCL1 (A), LHX8 (B) and ST6GALNAC5 (C) in cervical scrapes from HIV seronegative (white) and HIV seropositive (grey) women. The y‐axis displays the log10‐transformed Ct ratios. The x‐axis displays the histology subgroups for HIV seronegative and HIV seropositive women. CIN, cervical intraepithelial neoplasia. ***p < 0.001; ns, not significant.
Figure 4Individual marker performance for CIN3+ detection. ROC curves from the cross‐validated predicted probabilities of ASCL1 (A), LHX8 (B) and ST6GALNAC5 (C) for CIN3+ detection in cervical scrapes from WLHIV (cohort of WLHIV only). ROC, receiver operating characteristics; AUC, area under the ROC curves.
Performance of ASCL1, LHX8 and ST6GALNAC5 at fixed thresholds for 75% and 80% specificity
| 75% specificity | 80% specificity | |||||||
|---|---|---|---|---|---|---|---|---|
| CIN3+ sensitivity | 95%CI |
| positivity rate in CIN2 | CIN3+ sensitivity | 95%CI |
| positivity rate in CIN2 | |
| Cohort of WLHIV ( | ||||||||
|
| 72.1% | 59.2 to 82.9 | 44/61 | 48.5% | 67.2% | 54.0 to 78.7 | 41/61 | 42.4% |
|
| 73.8% | 60.9 to 84.2 | 45/61 | 42.4% | 70.5% | 57.4 to 81.5 | 18/61 | 42.4% |
|
| 55.7% | 42.4 to 68.5 | 34/61 | 33.3% | 54.1% | 40.8 to 66.9 | 28/61 | 33.0% |
| Referral cohort ( | ||||||||
|
| 94.4% | 89.6 to 99.2 | 84/89 | 75.0% | 94.4% | 89.6 to 99.2 | 84/89 | 75.0% |
|
| 92.1% | 86.5 to 97.7 | 82/89 | 75.0% | 89.9% | 83.6 to 97.7 | 80/89 | 75.0% |
|
| 89.9% | 83.6 to 97.7 | 80/89 | 83.3% | 89.9% | 83.6 to 97.7 | 80/89 | 83.3% |
Performance of ASCL1, LHX8 and ST6GALNAC5 for the detection of cervical intraepithelial neoplasia 3 or worse (CIN3+). CI, confidence interval; CIN, cervical intraepithelial neoplasia; n1, number of test positive disease cases; N1, total number of disease cases; WLHIV, women living with human immunodeficiency virus; a, all carcinomas were positive at this threshold.
Figure 5The proportion of hypermethylated ASCL1, LHX8, and ST6GALNAC5 genes testing positive in relation to severity of underlying cervical disease. The proportions of samples testing positive for none, one, two or three of the markers within the different histology subgroups (x‐axis) from the cohort of WLHIV and the referral population combined are represented on the y‐axis. The 75% specificity thresholds were used. CIN, cervical intraepithelial neoplasia; CxCa, cervical carcinomas.