| Literature DB >> 30100919 |
Min Wen1,2,3, Bo Zhou2, Xin Lin2, Yunhua Chen2, Jialei Song1,3, Yanmei Li1,3, Eldad Zacksenhaus4, Yaacov Ben-David1,3, Xiaojiang Hao1,3.
Abstract
Objectives: The aim of the present study was to define the potential relationship between xeroderma pigmentosum group D (XPD) Lys751Gln polymorphisms and the risk of leukemia.Entities:
Keywords: ERCC2; XPD; leukemia; meta-analysis; polymorphism
Year: 2018 PMID: 30100919 PMCID: PMC6073102 DOI: 10.3389/fgene.2018.00218
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
Main characteristics of datasets included for the XPD Lys751Gln polymorphism and leukemia risk.
| Author | Year | Country | Ethnicity | Subtypes | Age group | Genotyping method | Sample size | Genotype (n/frequency) | HWE | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Case | Control | ||||||||||||||
| Case | Control | Lys/Lys | Lys/Gln | Gln/Gln | Lys/Lys | Lys/Gln | Gln/Gln | ||||||||
| Seedhouse | 2002 | United Kingdom | Caucasians | AML | Adult | PCR-RFLP | 122 | 73 | 44 36.07% | 59 48.36% | 19 15.57% | 30 41.10% | 32 43.83% | 11 15.07% | 0.6195 |
| Allan | 2004 | United Kingdom | Caucasians | AML | Adult | PCR-RFLP | 474 | 696 | 180 37.97% | 216 45.57% | 78 16.46% | 293 42.10% | 299 42.96% | 104 14.94% | 0.0597 |
| Matullo | 2006 | European | Caucasians | Unclassified | Adult | TaqMan | 169 | 1094 | 70 41.42% | 79 46.75% | 20 11.83% | 397 36.29% | 504 46.07% | 193 17.64% | 0.1330 |
| Mehta | 2006 | United States | Caucasians | AML | Child | TaqMan | 313 | 432 | 116 37.06% | 142 45.37% | 55 17.57% | 183 42.36% | 194 44.91% | 55 12.73% | 0.7521 |
| African | AML | Child | TaqMan | 38 | 146 | 20 52.63% | 18 47.37% | 0 0% | 87 59.59% | 52 35.62% | 7 4.79% | 1.0000 | |||
| Pakakasama | 2007 | Thailand | Asia | ALL | Child | PCR-RFLP | 108 | 317 | 87 80.56% | 19 17.59% | 2 1.85% | 260 82.02% | 56 17.67% | 1 0.31% | 0.4932 |
| Batar | 2009 | Turkish | Caucasians | ALL | Child | PCR-RFLP | 70 | 75 | 26 37.14% | 33 47.14% | 11 15.72% | 27 36.00% | 35 46.67% | 13 17.33% | 0.8119 |
| Ganster | 2009 | Austria | Caucasians | CLL | Adult | PCR-RFLP | 444 | 444 | 157 35.36% | 222 50.00% | 65 14.64% | 186 41.89% | 194 43.69% | 64 14.42% | 0.2589 |
| Canalle | 2011 | Brazil | Caucasians | ALL | Child | PCR-RFLP | 162 | 223 | 72 44.44% | 78 48.15% | 12 7.41% | 105 47.09% | 101 45.29% | 17 7.62% | 0.3415 |
| African | ALL | Child | PCR-RFLP | 27 | 138 | 16 59.26% | 9 33.33% | 2 7.41% | 91 65.94% | 40 28.99% | 7 5.07% | 0.4134 | |||
| Ozcan | 2011 | Turkish | Caucasians | AML | Adult | PCR-RFLP | 35 | 100 | 18 51.43% | 16 45.71% | 1 2.86% | 41 41.00% | 41 41.00% | 18 18.00% | 0.2049 |
| ALL | Adult | PCR-RFLP | 10 | 100 | 4 40.00% | 4 40.00% | 2 20.00% | 41 41.00% | 41 41.00% | 18 18.00% | |||||
| Shi JY | 2011 | China | Asia | AML | Adult | MALDI-TOF MS | 303 | 554 | 243 80.20% | 58 19.14% | 2 0.66% | 480 86.64% | 70 12.64% | 4 0.72% | 0.3373 |
| Sorour A | 2013 | Egypt | Caucasians | AML | Adult | PCR-RFLP | 90 | 60 | 33 36.67% | 45 50.00% | 12 13.33% | 27 45.00% | 30 50.00% | 3 5.00% | 0.2197 |
| Banescu C | 2014 | Romania | Caucasians | CML | Adult | PCR-RFLP | 156 | 180 | 51 32.69% | 77 49.36% | 28 17.95% | 82 45.56% | 79 43.89% | 19 10.55% | 1.0000 |
| Douzi K | 2015 | Tunisia | Caucasians | ALL | No age limit | PCR-RFLP | 85 | 206 | 33 38.82% | 43 50.59% | 9 10.59% | 92 44.66% | 93 45.15% | 21 10.19% | 0.8742 |
| AML | PCR-RFLP | 34 | 206 | 21 61.77% | 11 32.35% | 2 5.88% | 92 44.66% | 93 45.15% | 21 10.19% | ||||||
| CML | PCR-RFLP | 87 | 206 | 40 45.98% | 46 52.87% | 1 1.15% | 92 44.66% | 93 45.15% | 21 10.19% | ||||||
| Dincer Y | 2015 | Turkish | Caucasians | ALL | Child | PCR-RFLP | 30 | 30 | 11 36.67% | 12 40.00% | 7 23.33% | 9 30.00% | 17 56.67% | 4 13.33% | 0.4721 |
Quality assessment analysis.
| Number | Author | Selection | Exposure | Comparability | Total score |
|---|---|---|---|---|---|
| 1 | Seedhouse C | 4 | 2 | 2 | 8 |
| 2 | Allan JM | 3 | 2 | 1 | 6 |
| 3 | Matullo G | 4 | 2 | 1 | 7 |
| 4 | Mehta PA | 3 | 2 | 1 | 6 |
| 5 | Pakakasama S | 3 | 2 | 1 | 6 |
| 6 | Batar B | 4 | 2 | 2 | 8 |
| 7 | Ganster C | 4 | 2 | 2 | 8 |
| 8 | Canalle R | 4 | 2 | 1 | 7 |
| 9 | Ozcan Ali | 4 | 2 | 1 | 7 |
| 10 | Shi JY | 3 | 2 | 1 | 6 |
| 11 | Sorour A | 4 | 2 | 1 | 7 |
| 12 | Banescu C | 4 | 2 | 2 | 8 |
| 13 | Douzi K | 3 | 2 | 2 | 7 |
| 14 | Dincer Y | 4 | 2 | 2 | 8 |
Summary of pooled OR in different ethnicities.
| Genetic model | Age group | Pooled OR (95% CI) | Heterogeneity | Test for overall effect | Statistical model | ||
|---|---|---|---|---|---|---|---|
| Gln vs. Lys | Caucasians | 1.08 [0.95–1.21] | 0.04 | 47% | 1.18 | 0.24 | Random-effects model |
| African | 1.16 [0.74–1.82] | 0.66 | 0% | 0.63 | 0.53 | Fixed-effects model | |
| Asian | 1.39 [1.05–1.86] | 0.45 | 0% | 2.26 | 0.02 | Fixed-effects model | |
| GlnGln vs. LysLys | Caucasians | 1.16 [0.87–1.56] | 0.01 | 55% | 1.00 | 0.32 | Random-effects model |
| African | 0.85 [0.21–3.38] | 0.29 | 12% | 0.23 | 0.82 | Fixed-effects model | |
| Asian | 1.77 [0.48–6.52] | 0.23 | 30% | 0.86 | 0.39 | Fixed-effects model | |
| LysGln vs. LysLys | Caucasians | 1.15 [1.02–1.30] | 0.77 | 0% | 2.34 | 0.02 | Fixed-effects model |
| African | 1.41 [0.81–2.48] | 0.78 | 0% | 1.20 | 0.23 | Fixed-effects model | |
| Asian | 1.35 [0.86–2.14] | 0.17 | 46% | 1.30 | 0.19 | Random-effects model | |
| GlnGln + LysGln vs. LysLys | Caucasians | 1.15 [1.02–1.28] | 0.31 | 14% | 2.39 | 0.02 | Fixed-effects model |
| African | 1.33 [0.77–2.30] | 1.00 | 0% | 1.02 | 0.31 | Fixed-effects model | |
| Asian | 1.42 [1.04–1.94] | 0.27 | 17% | 2.24 | 0.03 | Fixed-effects model | |
| GlnGln vs. LysGln + LysLys | Caucasians | 1.04 [0.81–1.33] | 0.05 | 44% | 0.32 | 0.75 | Random-effects model |
| African | 0.75 [0.19–2.93] | 0.26 | 22% | 0.41 | 0.68 | Fixed-effects model | |
| Asian | 1.67 [0.46–6.14] | 0.21 | 36% | 0.78 | 0.44 | Fixed-effects model | |
Summary of pooled OR in different age groups.
| Genetic model | Age group | Pooled OR (95% CI) | Heterogeneity | Test for overall effect | Statistical model | ||
|---|---|---|---|---|---|---|---|
| Gln vs. Lys | Adult | 1.13 [0.95–1.35] | 0.006 | 65% | 1.37 | 0.17 | Random-effects model |
| Childhood | 1.24 [1.08–1.43] | 0.74 | 0% | 2.97 | 0.003 | Fixed-effects model | |
| GlnGln vs. LysLys | Adult | 1.13 [0.77–1.66] | 0.02 | 58% | 0.64 | 0.52 | Random-effects model |
| Childhood | 1.54 [1.11–2.13] | 0.54 | 0% | 1.08 | 0.28 | Fixed-effects model | |
| LysGln vs. LysLys | Adult | 1.24 [1.08–1.42] | 0.36 | 9% | 3.06 | 0.002 | Fixed-effects model |
| Childhood | 1.21 [1.01–1.45] | 0.77 | 0% | 2.05 | 0.04 | Fixed-effects model | |
| GlnGln+LysGln vs. LysLys | Adult | 1.22 [1.01–1.48] | 0.07 | 46% | 2.04 | 0.04 | Random-effects model |
| Childhood | 1.28 [1.06–1.54] | 0.65 | 0% | 2.57 | 0.01 | Fixed-effects model | |
| GlnGln vs. LysGln + LysLys | Adult | 1.03 [0.76–1.41] | 0.07 | 47% | 0.19 | 0.85 | Random-effects model |
| Childhood | 1.40 [1.04–1.90] | 0.51 | 0% | 2.19 | 0.03 | Fixed-effects model | |
Summary of pooled OR in different leukemia subtype.
| Genetic model | Subtype | Pooled OR (95% CI) | Heterogeneity | Test for overall effect | Statistical model | ||
|---|---|---|---|---|---|---|---|
| Gln vs. Lys | Acute | 1.17 [1.07–1.29] | 0.33 | 12% | 3.37 | 0.0007 | Fixed-effects model |
| Chronic | 1.14 [0.83–1.57] | 0.03 | 72% | 0.80 | 0.42 | Random-effects model | |
| GlnGln vs. LysLys | Acute | 1.29 [1.04–1.59] | 0.32 | 14% | 2.35 | 0.02 | Fixed-effects model |
| Chronic | 1.08 [0.40–2.88] | 0.01 | 78% | 0.15 | 0.88 | Random-effects model | |
| LysGln vs. LysLys | Acute | 1.22 [1.07–1.39] | 0.76 | 0% | 2.99 | 0.003 | Fixed-effects model |
| Chronic | 1.36 [1.09–1.69] | 0.67 | 0% | 2.70 | 0.007 | Fixed-effects model | |
| GlnGln + LysGln vs. LysLys | Acute | 1.24 [1.09–1.40] | 0.63 | 0% | 3.38 | 0.0007 | Fixed-effects model |
| Chronic | 1.32 [1.07–1.63] | 0.22 | 34% | 2.60 | 0.009 | Fixed-effects model | |
| GlnGln vs. LysGln + LysLys | Acute | 1.19 [0.98–1.45] | 0.35 | 10% | 1.72 | 0.09 | Fixed-effects model |
| Chronic | 0.94 [0.39–2.28] | 0.02 | 76% | 0.13 | 0.90 | Random-effects model | |