| Literature DB >> 30087100 |
Jennifer Erdrich1, Kurt B Schaberg2, Michael S Khodadoust3, Li Zhou4, Andrew A Shelton1, Brendan C Visser1, James M Ford3,5, Ash A Alizadeh3, Stephen R Quake6, Pamela L Kunz3, John F Beausang7.
Abstract
Neuroendocrine tumors (NETs) arising from tailgut cysts are a rare but increasingly reported entity with gene expression profiles that may be indicative of the gastrointestinal cell of origin. We present a case report describing the unique pathological and genomic characteristics of a tailgut cyst NET that metastasized to liver. The histologic and immunohistochemical findings were consistent with a well-differentiated NET. Genomic testing indicates a germline frameshift in BRCA1 and a few somatic mutations of unknown significance. Transcriptomic analysis suggests an enteroendocrine L cell in the tailgut as a putative cell of origin. Genomic profiling of a rare NET and metastasis provides insight into its origin, development, and potential therapeutic options.Entities:
Keywords: neoplasm of the gastrointestinal tract; neuroendocrine neoplasm
Mesh:
Substances:
Year: 2018 PMID: 30087100 PMCID: PMC6169824 DOI: 10.1101/mcs.a003004
Source DB: PubMed Journal: Cold Spring Harb Mol Case Stud ISSN: 2373-2873
Figure 1.Imaging and histology of presacral mass. (A) Multiphasic CT demonstrating a hypervascular presacral mass (white arrow) measuring 4 × 6.3 × 4.6 cm. It displaces but does not appear to invade the adjacent rectum. (B) Presacral mass, 7 cm, firm and well-encapsulated, tethered to the sacrum, removed intact. (C) Well-differentiated neuroendocrine tumor component of presacral mass resection. H&E, 20× magnification. (D) Tailgut cyst component of presacral mass demonstrating lumina lined by prostatic-type and transitional epithelium with intervening fibrous tissue and disorganized smooth muscle. H&E, 20× magnification.
Figure 2.Gene expression for the top 25 genes in the presacral mass. Gene expression in fragments per kilobase per million (FPKM) in the presacral mass is sorted from high (blue) to low (white) and the top 25 genes compared in the three resected samples. Dominant Tissue indicates tissue-specific expression estimated from the GTEx database. EBV-Lymp represents expression associated with EBV-transformed lymphocytes. See the Methods section for details and top genes expressed in the metastasis (Supplemental Table S1) and normal liver (Supplemental Table S2). An asterisk indicates sort column.
Figure 3.Gene expression for the top differentially expressed genes in the liver metastasis. Comparison of the gene expression (FPKM) in the top 25 genes with increased expression in the metastasis relative to normal liver, sorted from high (blue) to low (white). Genes are sorted by the average log2 of the fold change (FC) expression in the biopsied (Bx) and resected (Rs) samples. Dominant Tissue indicates tissue-specific expression estimated from the GTEx database. See Methods for details. An asterisk indicates sort column.
Figure 4.Differential expression of the metastasis compared to the sacral mass and normal liver. Gene expression in the liver metastasis relative to the primary sacral mass (y-axis) is compared to the average expression in the metastasis relative to normal liver tissue (x-axis). Top genes that are highly expressed in the sacral mass (Fig. 1), metastasis (Fig. 2; Supplemental Table S1), and normal liver (Supplemental Table S2) are shown as labels with color and shapes according to the dominant tissue; many genes do not meet the specificity requirements (red squares). Boxed labels indicate genes that are highly expressed in the metastasis compared with both the presacral mass and normal liver (set A) and decreased expression in the metastasis relative to the presacral mass (set B).
Gene expression (FPKM) in resected samples for enteroendocrine-specific genes in the gastrointestinal tract
| Cell type | Hormone/precursor name | Gene | Liver | Sacral mass | |
|---|---|---|---|---|---|
| Normal | Met | ||||
| K cells | Gastric inhibitory peptide | 0.0 | 0.0 | 0.0 | |
| L cells | Glucagon-like peptide 1; glucagon-like peptide 2; oxyntomodulin | 1.1 | 113 | 687 | |
| Pancreatic polypeptide | 3.5 | 313 | 250 | ||
| Proprotein convertase subtilisin/kexin type 1 | 2.1 | 286 | 103 | ||
| I cells | Cholecystokinin | 0.0 | 0.0 | 0.1 | |
| G cells | Gastrin | 0.0 | 0.0 | 0.0 | |
| Entero-chromaffin | Tryptophan hyroxylase1 (serotonin) | 0.0 | 0.3 | 0.2 | |
| Tryptophan hyroxylase2 (serotonin) | 0.0 | 6.1 | 0.8 | ||
| Entero-chromaffin-like | Histidine decarboxylase (histidine production) | 0.6 | 0.0 | 0.2 | |
| Vesicular monoamine transporter subtype 2 (histidine production) | 11.1 | 6.4 | 9.8 | ||
| N cell | Neurotensin | 0.4 | 3.1 | 1.5 | |
| S cells | Secretin | 0.0 | 6.8 | 2.0 | |
| P cells | Leptin | 0.0 | 0.0 | 0.1 | |
| M cells | Motilin | 0.0 | 0.0 | 6.3 | |
| D cells | Somatostatin | 0.0 | 0.3 | 3.8 | |
| A cells (X-like) | Ghrelin | 0.0 | 0.4 | 0.8 | |
| Nesfatin-1 | 62 | 317 | 274 | ||
RNA sequencing metrics
| Sample | Total RNA (ng) | PF clusters | |
|---|---|---|---|
| 1 | Normal liver, biopsy | 344 | 47,443,335 |
| 2 | Normal liver, resected | 800 | 43,283,705 |
| 3 | Liver metastasis, biopsy | 620 | 69,793,317 |
| 4 | Liver metastasis, resected | 800 | 57,589,019 |
| 5 | Sacral mass, resected | 800 | 46,676,100 |