Literature DB >> 30082465

Roles of Long Noncoding RNAs and Circular RNAs in Translation.

Marina Chekulaeva1, Nikolaus Rajewsky1.   

Abstract

Most of the eukaryotic genome is pervasively transcribed, yielding hundreds to thousands of long noncoding RNAs (lncRNAs) and circular RNAs (circRNAs), some of which are well conserved during evolution. Functions have been described for a few lncRNAs and circRNAs but remain elusive for most. Both classes of RNAs play regulatory roles in translation by interacting with messenger RNAs (mRNAs), microRNAs (miRNAs), or mRNA-binding proteins (RBPs), thereby modulating translation in trans Moreover, although initially defined as noncoding, a number of lncRNAs and circRNAs have recently been reported to contain functional open reading frames (ORFs). Here, we review current understanding of the roles played by lncRNAs and circRNAs in protein synthesis and discuss challenges and open questions in the field.
Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2019        PMID: 30082465      PMCID: PMC6546045          DOI: 10.1101/cshperspect.a032680

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  102 in total

1.  Analysis of intron sequences reveals hallmarks of circular RNA biogenesis in animals.

Authors:  Andranik Ivanov; Sebastian Memczak; Emanuel Wyler; Francesca Torti; Hagit T Porath; Marta R Orejuela; Michael Piechotta; Erez Y Levanon; Markus Landthaler; Christoph Dieterich; Nikolaus Rajewsky
Journal:  Cell Rep       Date:  2014-12-31       Impact factor: 9.423

Review 2.  Nonsense-Mediated mRNA Decay Begins Where Translation Ends.

Authors:  Evangelos D Karousis; Oliver Mühlemann
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

Review 3.  Noncanonical Translation Initiation in Eukaryotes.

Authors:  Thaddaeus Kwan; Sunnie R Thompson
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

4.  Identification of small ORFs in vertebrates using ribosome footprinting and evolutionary conservation.

Authors:  Ariel A Bazzini; Timothy G Johnstone; Romain Christiano; Sebastian D Mackowiak; Benedikt Obermayer; Elizabeth S Fleming; Charles E Vejnar; Miler T Lee; Nikolaus Rajewsky; Tobias C Walther; Antonio J Giraldez
Journal:  EMBO J       Date:  2014-04-04       Impact factor: 11.598

5.  circRNA biogenesis competes with pre-mRNA splicing.

Authors:  Reut Ashwal-Fluss; Markus Meyer; Nagarjuna Reddy Pamudurti; Andranik Ivanov; Osnat Bartok; Mor Hanan; Naveh Evantal; Sebastian Memczak; Nikolaus Rajewsky; Sebastian Kadener
Journal:  Mol Cell       Date:  2014-09-18       Impact factor: 17.970

6.  Circular RNAs are abundant, conserved, and associated with ALU repeats.

Authors:  William R Jeck; Jessica A Sorrentino; Kai Wang; Michael K Slevin; Christin E Burd; Jinze Liu; William F Marzluff; Norman E Sharpless
Journal:  RNA       Date:  2012-12-18       Impact factor: 4.942

Review 7.  Discovery and characterization of smORF-encoded bioactive polypeptides.

Authors:  Alan Saghatelian; Juan Pablo Couso
Journal:  Nat Chem Biol       Date:  2015-12       Impact factor: 15.040

8.  Complementary sequence-mediated exon circularization.

Authors:  Xiao-Ou Zhang; Hai-Bin Wang; Yang Zhang; Xuhua Lu; Ling-Ling Chen; Li Yang
Journal:  Cell       Date:  2014-09-18       Impact factor: 41.582

9.  DAP5 associates with eIF2β and eIF4AI to promote Internal Ribosome Entry Site driven translation.

Authors:  Noa Liberman; Valentina Gandin; Yuri V Svitkin; Maya David; Geneviève Virgili; Maritza Jaramillo; Martin Holcik; Bhushan Nagar; Adi Kimchi; Nahum Sonenberg
Journal:  Nucleic Acids Res       Date:  2015-03-16       Impact factor: 16.971

10.  A human microprotein that interacts with the mRNA decapping complex.

Authors:  Nadia G D'Lima; Jiao Ma; Lauren Winkler; Qian Chu; Ken H Loh; Elizabeth O Corpuz; Bogdan A Budnik; Jens Lykke-Andersen; Alan Saghatelian; Sarah A Slavoff
Journal:  Nat Chem Biol       Date:  2016-12-05       Impact factor: 15.040

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  11 in total

Review 1.  Noncanonical Translation Initiation in Eukaryotes.

Authors:  Thaddaeus Kwan; Sunnie R Thompson
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-04-01       Impact factor: 10.005

Review 2.  The Epitranscriptome in Translation Regulation.

Authors:  Eyal Peer; Sharon Moshitch-Moshkovitz; Gideon Rechavi; Dan Dominissini
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-08-01       Impact factor: 10.005

Review 3.  Ribosome Profiling: Global Views of Translation.

Authors:  Nicholas T Ingolia; Jeffrey A Hussmann; Jonathan S Weissman
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

4.  Proximal Tubule Translational Profiling during Kidney Fibrosis Reveals Proinflammatory and Long Noncoding RNA Expression Patterns with Sexual Dimorphism.

Authors:  Haojia Wu; Chun-Fu Lai; Monica Chang-Panesso; Benjamin D Humphreys
Journal:  J Am Soc Nephrol       Date:  2019-09-19       Impact factor: 10.121

5.  Bioinformatic Analysis of Circular RNA Expression.

Authors:  Enrico Gaffo; Alessia Buratin; Anna Dal Molin; Stefania Bortoluzzi
Journal:  Methods Mol Biol       Date:  2021

Review 6.  Circular RNAs in hepatocellular carcinoma: Recent advances.

Authors:  Zhao-Shan Niu; Wen-Hong Wang
Journal:  World J Gastrointest Oncol       Date:  2022-06-15

7.  lncRNA LINC00473 promotes proliferation, migration, invasion and inhibition of apoptosis of non-small cell lung cancer cells by acting as a sponge of miR-497-5p.

Authors:  Shao-Hua Xu; Yu-Hong Bo; Han-Chen Ma; Hua-Nan Zhang; Ming-Ju Shao
Journal:  Oncol Lett       Date:  2021-03-30       Impact factor: 2.967

8.  DNA Satellites Are Transcribed as Part of the Non-Coding Genome in Eukaryotes and Bacteria.

Authors:  Juan A Subirana; Xavier Messeguer
Journal:  Genes (Basel)       Date:  2021-10-20       Impact factor: 4.096

9.  circZNF827 nucleates a transcription inhibitory complex to balance neuronal differentiation.

Authors:  Anne Kruse Hollensen; Henriette Sylvain Thomsen; Marta Lloret-Llinares; Andreas Bjerregaard Kamstrup; Jacob Malte Jensen; Majbritt Luckmann; Nanna Birkmose; Johan Palmfeldt; Torben Heick Jensen; Thomas B Hansen; Christian Kroun Damgaard
Journal:  Elife       Date:  2020-11-11       Impact factor: 8.140

Review 10.  Understanding small ORF diversity through a comprehensive transcription feature classification.

Authors:  Diego Guerra-Almeida; Diogo Antonio Tschoeke; Rodrigo Nunes-da-Fonseca
Journal:  DNA Res       Date:  2021-09-13       Impact factor: 4.477

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