Literature DB >> 30080209

Genome editing of upstream open reading frames enables translational control in plants.

Huawei Zhang1, Xiaomin Si1,2, Xiang Ji1,2, Rong Fan2,3, Jinxing Liu1, Kunling Chen1, Daowen Wang1,2, Caixia Gao1,2.   

Abstract

Translational regulation by upstream open reading frames (uORFs) is becoming established as a general mechanism for controlling the amount of protein that is synthesized from downstream primary ORFs (pORFs). We found that genome editing of endogenous uORFs in plants enabled the modulation of translation of mRNAs from four pORFs that are involved in either development or antioxidant biosynthesis. A single-guide RNA that targeted the region harboring a uORF initiation codon can produce multiple mutations. Following uORF editing, we observed varying amounts of mRNA translation in four pORFs. Notably, editing the uORF of LsGGP2, which encodes a key enzyme in vitamin C biosynthesis in lettuce, not only increased oxidation stress tolerance, but also increased ascorbate content by ∼150%. These data indicate that editing plant uORFs provides a generalizable, efficient method for manipulating translation of mRNA that could be applied to dissect biological mechanisms and improve crops.

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Mesh:

Year:  2018        PMID: 30080209     DOI: 10.1038/nbt.4202

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  31 in total

1.  An element within the 5' untranslated region of human Hsp70 mRNA which acts as a general enhancer of mRNA translation.

Authors:  S Vivinus; S Baulande; M van Zanten; F Campbell; P Topley; J H Ellis; P Dessen; H Coste
Journal:  Eur J Biochem       Date:  2001-04

2.  High-Efficiency Genome Editing in Arabidopsis Using YAO Promoter-Driven CRISPR/Cas9 System.

Authors:  Liuhua Yan; Shaowei Wei; Yaorong Wu; Ruolan Hu; Hongju Li; Weicai Yang; Qi Xie
Journal:  Mol Plant       Date:  2015-10-23       Impact factor: 13.164

3.  Translation efficiency of mRNAs is increased by antisense oligonucleotides targeting upstream open reading frames.

Authors:  Xue-Hai Liang; Wen Shen; Hong Sun; Michael T Migawa; Timothy A Vickers; Stanley T Crooke
Journal:  Nat Biotechnol       Date:  2016-07-11       Impact factor: 54.908

4.  Arabidopsis mesophyll protoplasts: a versatile cell system for transient gene expression analysis.

Authors:  Sang-Dong Yoo; Young-Hee Cho; Jen Sheen
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

Review 5.  Regulation of plant translation by upstream open reading frames.

Authors:  Albrecht G von Arnim; Qidong Jia; Justin N Vaughn
Journal:  Plant Sci       Date:  2013-09-18       Impact factor: 4.729

6.  Enhancing ascorbate in fruits and tubers through over-expression of the L-galactose pathway gene GDP-L-galactose phosphorylase.

Authors:  Sean Bulley; Michele Wright; Caius Rommens; Hua Yan; Maysoon Rassam; Kui Lin-Wang; Christelle Andre; Di Brewster; Sakuntala Karunairetnam; Andrew C Allan; William A Laing
Journal:  Plant Biotechnol J       Date:  2011-12-01       Impact factor: 9.803

Review 7.  Engineering Translation in Mammalian Cell Factories to Increase Protein Yield: The Unexpected Use of Long Non-Coding SINEUP RNAs.

Authors:  Silvia Zucchelli; Laura Patrucco; Francesca Persichetti; Stefano Gustincich; Diego Cotella
Journal:  Comput Struct Biotechnol J       Date:  2016-10-27       Impact factor: 7.271

8.  Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.

Authors:  Sebastian Reyes-Chin-Wo; Zhiwen Wang; Xinhua Yang; Alexander Kozik; Siwaret Arikit; Chi Song; Liangfeng Xia; Lutz Froenicke; Dean O Lavelle; María-José Truco; Rui Xia; Shilin Zhu; Chunyan Xu; Huaqin Xu; Xun Xu; Kyle Cox; Ian Korf; Blake C Meyers; Richard W Michelmore
Journal:  Nat Commun       Date:  2017-04-12       Impact factor: 14.919

9.  Evolved Cas9 variants with broad PAM compatibility and high DNA specificity.

Authors:  Johnny H Hu; Shannon M Miller; Maarten H Geurts; Weixin Tang; Liwei Chen; Ning Sun; Christina M Zeina; Xue Gao; Holly A Rees; Zhi Lin; David R Liu
Journal:  Nature       Date:  2018-02-28       Impact factor: 49.962

10.  uORF-mediated translation allows engineered plant disease resistance without fitness costs.

Authors:  Guoyong Xu; Meng Yuan; Chaoren Ai; Lijing Liu; Edward Zhuang; Sargis Karapetyan; Shiping Wang; Xinnian Dong
Journal:  Nature       Date:  2017-05-17       Impact factor: 49.962

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  53 in total

1.  Modulation of Shoot Phosphate Level and Growth by PHOSPHATE1 Upstream Open Reading Frame.

Authors:  Rodrigo S Reis; Jules Deforges; Tatiana Sokoloff; Yves Poirier
Journal:  Plant Physiol       Date:  2020-04-23       Impact factor: 8.340

2.  Metabolite Control of Translation by Conserved Peptide uORFs: The Ribosome as a Metabolite Multisensor.

Authors:  Sjors van der Horst; Teodora Filipovska; Johannes Hanson; Sjef Smeekens
Journal:  Plant Physiol       Date:  2019-08-26       Impact factor: 8.340

3.  Domestication of wild tomato is accelerated by genome editing.

Authors:  Tingdong Li; Xinping Yang; Yuan Yu; Xiaomin Si; Xiawan Zhai; Huawei Zhang; Wenxia Dong; Caixia Gao; Cao Xu
Journal:  Nat Biotechnol       Date:  2018-10-01       Impact factor: 54.908

Review 4.  Conserved Upstream Open Reading Frame Nascent Peptides That Control Translation.

Authors:  Thomas E Dever; Ivaylo P Ivanov; Matthew S Sachs
Journal:  Annu Rev Genet       Date:  2020-09-01       Impact factor: 16.830

Review 5.  Gene editing: an instrument for practical application of gene biology to plant breeding.

Authors:  Yuan-Yuan Tan; Hao Du; Xia Wu; Yan-Hua Liu; Meng Jiang; Shi-Yong Song; Liang Wu; Qing-Yao Shu
Journal:  J Zhejiang Univ Sci B       Date:  2020-06       Impact factor: 3.066

Review 6.  Alternative ORFs and small ORFs: shedding light on the dark proteome.

Authors:  Mona Wu Orr; Yuanhui Mao; Gisela Storz; Shu-Bing Qian
Journal:  Nucleic Acids Res       Date:  2020-02-20       Impact factor: 16.971

7.  The Tomato Translational Landscape Revealed by Transcriptome Assembly and Ribosome Profiling.

Authors:  Hsin-Yen Larry Wu; Gaoyuan Song; Justin W Walley; Polly Yingshan Hsu
Journal:  Plant Physiol       Date:  2019-06-27       Impact factor: 8.340

8.  Manipulating gene translation in plants by CRISPR-Cas9-mediated genome editing of upstream open reading frames.

Authors:  Xiaomin Si; Huawei Zhang; Yanpeng Wang; Kunling Chen; Caixia Gao
Journal:  Nat Protoc       Date:  2020-01-08       Impact factor: 13.491

9.  Efficient deletion of multiple circle RNA loci by CRISPR-Cas9 reveals Os06circ02797 as a putative sponge for OsMIR408 in rice.

Authors:  Jianping Zhou; Mingzhu Yuan; Yuxin Zhao; Quan Quan; Dong Yu; Han Yang; Xu Tang; Xuhui Xin; Guangze Cai; Qian Qian; Yiping Qi; Yong Zhang
Journal:  Plant Biotechnol J       Date:  2021-01-28       Impact factor: 9.803

Review 10.  Regulation of Vitamin C Accumulation for Improved Tomato Fruit Quality and Alleviation of Abiotic Stress.

Authors:  Ifigeneia Mellidou; Athanasios Koukounaras; Stefanos Kostas; Efstathia Patelou; Angelos K Kanellis
Journal:  Genes (Basel)       Date:  2021-05-06       Impact factor: 4.096

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