Literature DB >> 30061747

Three-dimensional chromatin packing and positioning of plant genomes.

Ezgi Süheyla Doğan1, Chang Liu2.   

Abstract

Information and function of a genome are not only decorated with epigenetic marks in the linear DNA sequence but also in their non-random spatial organization in the nucleus. Recent research has revealed that three-dimensional (3D) chromatin organization is highly correlated with the functionality of the genome, contributing to many cellular processes. Driven by the improvements in chromatin conformation capture methods and visualization techniques, the past decade has been an exciting period for the study of plants' 3D genome structures, and our knowledge in this area has been substantially advanced. This Review describes our current understanding of plant chromatin organization and positioning beyond the nucleosomal level, and discusses future directions.

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Year:  2018        PMID: 30061747     DOI: 10.1038/s41477-018-0199-5

Source DB:  PubMed          Journal:  Nat Plants        ISSN: 2055-0278            Impact factor:   15.793


  28 in total

1.  Chromatin Organization in Early Land Plants Reveals an Ancestral Association between H3K27me3, Transposons, and Constitutive Heterochromatin.

Authors:  Sean A Montgomery; Yasuhiro Tanizawa; Bence Galik; Nan Wang; Tasuku Ito; Takako Mochizuki; Svetlana Akimcheva; John L Bowman; Valérie Cognat; Laurence Maréchal-Drouard; Heinz Ekker; Syuan-Fei Hong; Takayuki Kohchi; Shih-Shun Lin; Li-Yu Daisy Liu; Yasukazu Nakamura; Lia R Valeeva; Eugene V Shakirov; Dorothy E Shippen; Wei-Lun Wei; Masaru Yagura; Shohei Yamaoka; Katsuyuki T Yamato; Chang Liu; Frédéric Berger
Journal:  Curr Biol       Date:  2020-01-30       Impact factor: 10.834

Review 2.  Three-dimensional nuclear organization in Arabidopsis thaliana.

Authors:  Frédéric Pontvianne; Stefan Grob
Journal:  J Plant Res       Date:  2020-04-02       Impact factor: 2.629

3.  Nuclear pore complex-mediated gene expression in Arabidopsis thaliana.

Authors:  Kentaro Tamura
Journal:  J Plant Res       Date:  2020-03-13       Impact factor: 2.629

Review 4.  Computational approaches for inferring 3D conformations of chromatin from chromosome conformation capture data.

Authors:  Dario Meluzzi; Gaurav Arya
Journal:  Methods       Date:  2019-08-27       Impact factor: 3.608

Review 5.  Charting the genomic landscape of seed-free plants.

Authors:  Péter Szövényi; Andika Gunadi; Fay-Wei Li
Journal:  Nat Plants       Date:  2021-04-05       Impact factor: 15.793

6.  PlantGSAD: a comprehensive gene set annotation database for plant species.

Authors:  Xuelian Ma; Hengyu Yan; Jiaotong Yang; Yue Liu; Zhongqiu Li; Minghao Sheng; Yaxin Cao; Xinyue Yu; Xin Yi; Wenying Xu; Zhen Su
Journal:  Nucleic Acids Res       Date:  2022-01-07       Impact factor: 16.971

7.  Chromatin remodeling complexes regulate genome architecture in Arabidopsis.

Authors:  Tingting Yang; Dingyue Wang; Guangmei Tian; Linhua Sun; Minqi Yang; Xiaochang Yin; Jun Xiao; Yu Sheng; Danmeng Zhu; Hang He; Yue Zhou
Journal:  Plant Cell       Date:  2022-07-04       Impact factor: 12.085

Review 8.  Accessory Chromosomes in Fusarium oxysporum.

Authors:  He Yang; Houlin Yu; Li-Jun Ma
Journal:  Phytopathology       Date:  2020-08-06       Impact factor: 4.025

9.  Marchantia TCP transcription factor activity correlates with three-dimensional chromatin structure.

Authors:  Ezgi Süheyla Karaaslan; Nan Wang; Natalie Faiß; Yuyu Liang; Sean A Montgomery; Sascha Laubinger; Kenneth Wayne Berendzen; Frédéric Berger; Holger Breuninger; Chang Liu
Journal:  Nat Plants       Date:  2020-09-07       Impact factor: 15.793

Review 10.  Telomeres and Subtelomeres Dynamics in the Context of Early Chromosome Interactions During Meiosis and Their Implications in Plant Breeding.

Authors:  Miguel Aguilar; Pilar Prieto
Journal:  Front Plant Sci       Date:  2021-06-04       Impact factor: 5.753

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