Literature DB >> 30051792

Applications of Machine Learning Methods in Drug Toxicity Prediction.

Li Zhang1, Hui Zhang1, Haixin Ai1,2,3, Huan Hu1, Shimeng Li1, Jian Zhao1, Hongsheng Liu1,2,3.   

Abstract

Toxicity evaluation is an important part of the preclinical safety assessment of new drugs, which is directly related to human health and the fate of drugs. It is of importance to study how to evaluate drug toxicity accurately and economically. The traditional in vitro and in vivo toxicity tests are laborious, time-consuming, highly expensive, and even involve animal welfare issues. Computational methods developed for drug toxicity prediction can compensate for the shortcomings of traditional methods and have been considered useful in the early stages of drug development. Numerous drug toxicity prediction models have been developed using a variety of computational methods. With the advance of the theory of machine learning and molecular representation, more and more drug toxicity prediction models are developed using a variety of machine learning methods, such as support vector machine, random forest, naive Bayesian, back propagation neural network. And significant advances have been made in many toxicity endpoints, such as carcinogenicity, mutagenicity, and hepatotoxicity. In this review, we aimed to provide a comprehensive overview of the machine learning based drug toxicity prediction studies conducted in recent years. In addition, we compared the performance of the models proposed in these studies in terms of accuracy, sensitivity, and specificity, providing a view of the current state-of-the-art in this field and highlighting the issues in the current studies. Copyright© Bentham Science Publishers; For any queries, please email at epub@benthamscience.org.

Entities:  

Keywords:  Carcinogenicity prediction; Drug toxicity prediction; Hepatotoxicity prediction; Machine learning; Molecular descriptors; Mutagenicityzzm321990prediction; QSAR.

Mesh:

Year:  2018        PMID: 30051792     DOI: 10.2174/1568026618666180727152557

Source DB:  PubMed          Journal:  Curr Top Med Chem        ISSN: 1568-0266            Impact factor:   3.295


  15 in total

Review 1.  Artificial Intelligence for Drug Toxicity and Safety.

Authors:  Anna O Basile; Alexandre Yahi; Nicholas P Tatonetti
Journal:  Trends Pharmacol Sci       Date:  2019-08-02       Impact factor: 14.819

2.  Validation of the usefulness of artificial neural networks for risk prediction of adverse drug reactions used for individual patients in clinical practice.

Authors:  Shungo Imai; Yoh Takekuma; Hitoshi Kashiwagi; Takayuki Miyai; Masaki Kobayashi; Ken Iseki; Mitsuru Sugawara
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3.  FLOating-Window Projective Separator (FloWPS): A Data Trimming Tool for Support Vector Machines (SVM) to Improve Robustness of the Classifier.

Authors:  Victor Tkachev; Maxim Sorokin; Artem Mescheryakov; Alexander Simonov; Andrew Garazha; Anton Buzdin; Ilya Muchnik; Nicolas Borisov
Journal:  Front Genet       Date:  2019-01-15       Impact factor: 4.599

4.  In Silico Predictions of Endocrine Disruptors Properties.

Authors:  Melanie Schneider; Jean-Luc Pons; Gilles Labesse; William Bourguet
Journal:  Endocrinology       Date:  2019-11-01       Impact factor: 4.736

5.  PlayMolecule Glimpse: Understanding Protein-Ligand Property Predictions with Interpretable Neural Networks.

Authors:  Alejandro Varela-Rial; Iain Maryanow; Maciej Majewski; Stefan Doerr; Nikolai Schapin; José Jiménez-Luna; Gianni De Fabritiis
Journal:  J Chem Inf Model       Date:  2022-01-03       Impact factor: 4.956

6.  Optimizing peptide inhibitors of SARS-Cov-2 nsp10/nsp16 methyltransferase predicted through molecular simulation and machine learning.

Authors:  John R Hamre; M Saleet Jafri
Journal:  Inform Med Unlocked       Date:  2022-02-28

7.  Drug repositioning by merging active subnetworks validated in cancer and COVID-19.

Authors:  Marta Lucchetta; Marco Pellegrini
Journal:  Sci Rep       Date:  2021-10-06       Impact factor: 4.379

Review 8.  Probabilistic risk assessment - the keystone for the future of toxicology.

Authors:  Alexandra Maertens; Emily Golden; Thomas H Luechtefeld; Sebastian Hoffmann; Katya Tsaioun; Thomas Hartung
Journal:  ALTEX       Date:  2022       Impact factor: 6.250

Review 9.  Nano-(Q)SAR for Cytotoxicity Prediction of Engineered Nanomaterials.

Authors:  Andrey A Buglak; Anatoly V Zherdev; Boris B Dzantiev
Journal:  Molecules       Date:  2019-12-11       Impact factor: 4.411

10.  The study of the association between immune monitoring and pneumonia in kidney transplant recipients through machine learning models.

Authors:  Bo Peng; Hang Gong; Han Tian; Quan Zhuang; Junhui Li; Ke Cheng; Yingzi Ming
Journal:  J Transl Med       Date:  2020-09-29       Impact factor: 5.531

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