Literature DB >> 31383376

Artificial Intelligence for Drug Toxicity and Safety.

Anna O Basile1, Alexandre Yahi1, Nicholas P Tatonetti2.   

Abstract

Interventional pharmacology is one of medicine's most potent weapons against disease. These drugs, however, can result in damaging side effects and must be closely monitored. Pharmacovigilance is the field of science that monitors, detects, and prevents adverse drug reactions (ADRs). Safety efforts begin during the development process, using in vivo and in vitro studies, continue through clinical trials, and extend to postmarketing surveillance of ADRs in real-world populations. Future toxicity and safety challenges, including increased polypharmacy and patient diversity, stress the limits of these traditional tools. Massive amounts of newly available data present an opportunity for using artificial intelligence (AI) and machine learning to improve drug safety science. Here, we explore recent advances as applied to preclinical drug safety and postmarketing surveillance with a specific focus on machine and deep learning (DL) approaches.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  adverse drug reactions; deep learning; machine learning; pharmacovigilance

Mesh:

Year:  2019        PMID: 31383376      PMCID: PMC6710127          DOI: 10.1016/j.tips.2019.07.005

Source DB:  PubMed          Journal:  Trends Pharmacol Sci        ISSN: 0165-6147            Impact factor:   14.819


  74 in total

Review 1.  Methods for causality assessment of adverse drug reactions: a systematic review.

Authors:  Taofikat B Agbabiaka; Jelena Savović; Edzard Ernst
Journal:  Drug Saf       Date:  2008       Impact factor: 5.606

2.  A novel signal detection algorithm for identifying hidden drug-drug interactions in adverse event reports.

Authors:  Nicholas P Tatonetti; Guy Haskin Fernald; Russ B Altman
Journal:  J Am Med Inform Assoc       Date:  2011-06-14       Impact factor: 4.497

3.  Data-driven prediction of drug effects and interactions.

Authors:  Nicholas P Tatonetti; Patrick P Ye; Roxana Daneshjou; Russ B Altman
Journal:  Sci Transl Med       Date:  2012-03-14       Impact factor: 17.956

4.  The thalidomide disaster, lessons from the past.

Authors:  James E Ridings
Journal:  Methods Mol Biol       Date:  2013

Review 5.  Data mining of the public version of the FDA Adverse Event Reporting System.

Authors:  Toshiyuki Sakaeda; Akiko Tamon; Kaori Kadoyama; Yasushi Okuno
Journal:  Int J Med Sci       Date:  2013-04-25       Impact factor: 3.738

Review 6.  Under-reporting of adverse drug reactions : a systematic review.

Authors:  Lorna Hazell; Saad A W Shakir
Journal:  Drug Saf       Date:  2006       Impact factor: 5.228

7.  ChEMBL: a large-scale bioactivity database for drug discovery.

Authors:  Anna Gaulton; Louisa J Bellis; A Patricia Bento; Jon Chambers; Mark Davies; Anne Hersey; Yvonne Light; Shaun McGlinchey; David Michalovich; Bissan Al-Lazikani; John P Overington
Journal:  Nucleic Acids Res       Date:  2011-09-23       Impact factor: 16.971

8.  BindingDB: a web-accessible database of experimentally determined protein-ligand binding affinities.

Authors:  Tiqing Liu; Yuhmei Lin; Xin Wen; Robert N Jorissen; Michael K Gilson
Journal:  Nucleic Acids Res       Date:  2006-12-01       Impact factor: 16.971

9.  Reactome: a knowledgebase of biological pathways.

Authors:  G Joshi-Tope; M Gillespie; I Vastrik; P D'Eustachio; E Schmidt; B de Bono; B Jassal; G R Gopinath; G R Wu; L Matthews; S Lewis; E Birney; L Stein
Journal:  Nucleic Acids Res       Date:  2005-01-01       Impact factor: 16.971

10.  A side effect resource to capture phenotypic effects of drugs.

Authors:  Michael Kuhn; Monica Campillos; Ivica Letunic; Lars Juhl Jensen; Peer Bork
Journal:  Mol Syst Biol       Date:  2010-01-19       Impact factor: 11.429

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  23 in total

Review 1.  Artificial Intelligence Based on Machine Learning in Pharmacovigilance: A Scoping Review.

Authors:  Benjamin Kompa; Joe B Hakim; Anil Palepu; Kathryn Grace Kompa; Michael Smith; Paul A Bain; Stephen Woloszynek; Jeffery L Painter; Andrew Bate; Andrew L Beam
Journal:  Drug Saf       Date:  2022-05-17       Impact factor: 5.606

2.  The Use of Artificial Intelligence in Pharmacovigilance: A Systematic Review of the Literature.

Authors:  Maribel Salas; Jan Petracek; Priyanka Yalamanchili; Omar Aimer; Dinesh Kasthuril; Sameer Dhingra; Toluwalope Junaid; Tina Bostic
Journal:  Pharmaceut Med       Date:  2022-07-29

3.  Predicting Nanoparticle Delivery to Tumors Using Machine Learning and Artificial Intelligence Approaches.

Authors:  Zhoumeng Lin; Wei-Chun Chou; Yi-Hsien Cheng; Chunla He; Nancy A Monteiro-Riviere; Jim E Riviere
Journal:  Int J Nanomedicine       Date:  2022-03-24

4.  Recent trends in artificial intelligence-driven identification and development of anti-neurodegenerative therapeutic agents.

Authors:  Kushagra Kashyap; Mohammad Imran Siddiqi
Journal:  Mol Divers       Date:  2021-07-19       Impact factor: 3.364

5.  Machine learning guided association of adverse drug reactions with in vitro target-based pharmacology.

Authors:  Robert Ietswaart; Seda Arat; Amanda X Chen; Saman Farahmand; Bumjun Kim; William DuMouchel; Duncan Armstrong; Alexander Fekete; Jeffrey J Sutherland; Laszlo Urban
Journal:  EBioMedicine       Date:  2020-06-18       Impact factor: 8.143

6.  Artificial intelligence in pharmacovigilance: Practical utility.

Authors:  Kotni Murali; Sukhmeet Kaur; Ajay Prakash; Bikash Medhi
Journal:  Indian J Pharmacol       Date:  2020-01-16       Impact factor: 1.200

7.  Could graph neural networks learn better molecular representation for drug discovery? A comparison study of descriptor-based and graph-based models.

Authors:  Dejun Jiang; Zhenxing Wu; Chang-Yu Hsieh; Guangyong Chen; Ben Liao; Zhe Wang; Chao Shen; Dongsheng Cao; Jian Wu; Tingjun Hou
Journal:  J Cheminform       Date:  2021-02-17       Impact factor: 5.514

8.  Machine Learning for Predicting Risk of Drug-Induced Autoimmune Diseases by Structural Alerts and Daily Dose.

Authors:  Yue Wu; Jieqiang Zhu; Peter Fu; Weida Tong; Huixiao Hong; Minjun Chen
Journal:  Int J Environ Res Public Health       Date:  2021-07-03       Impact factor: 3.390

9.  SuperCYPsPred-a web server for the prediction of cytochrome activity.

Authors:  Priyanka Banerjee; Mathias Dunkel; Emanuel Kemmler; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2020-07-02       Impact factor: 16.971

10.  Machine Learning Strategies When Transitioning between Biological Assays.

Authors:  Staffan Arvidsson McShane; Ernst Ahlberg; Tobias Noeske; Ola Spjuth
Journal:  J Chem Inf Model       Date:  2021-06-21       Impact factor: 4.956

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