| Literature DB >> 30023605 |
Liqun Wang1,1, Yang Shen1,1, Yanbo Yang1, Wangting Lu1, Wenhui Li1, Feng Wei1, Guang Zheng1, Youhua Zhou1, Wanquan Zheng1,2, Yuancheng Cao1.
Abstract
The molecular interaction between the oligonucleotides and lipid membranes is the key to the functions of virus, aptamer, and various oligonucleotide-based materials. In this study, the conformational changes of oligonucleotides (dT25) on lamellar cationic 1,2-dimyristoyl-3-trimethylammonium-propane (DMTAP) bilayer were investigated by polarization-resolved sum frequency generation vibrational spectroscopy (SFG-VS) in situ. The SFG-VS spectra within different wavenumber ranges were analyzed to give conformation details of thymine groups, phosphate groups, and OD/OH groups and to provide a comprehensive and fundamental understanding of the oligonucleotide adsorption on a model bilayer. It is shown that the adsorption of dT25 on DMTAP bilayer reaches maximum at CdT ≈ 500 nM. And the conformation of dT25 molecules change significantly when surface charge of DMTAP bilayer reaches the point of zero charge (PZC) at CdT ≈ 100 nM. Combined spectroscopic evidences also indicate that the formation of electric double layer at the DMTAP/dT25 surface follows the Gouy-Chapman-Stern model. The analysis results also show that the symmetric PO2- stretching mode of oligonucleotide molecules can serve as a sensitive vibration molecular probe for quantifying the oligonucleotide/lipid charge ratio and determine the point of zero charge (PZC) of lipid bilayer surface, which may help researchers to control the layer-by-layer assembly of oligonucleotide-lipid complexes and to improve the efficiency genetic therapy against cancer and viral infections.Entities:
Year: 2017 PMID: 30023605 PMCID: PMC6045418 DOI: 10.1021/acsomega.7b01214
Source DB: PubMed Journal: ACS Omega ISSN: 2470-1343
Figure 1SFG spectra collected in the wavenumber range of 1550–1800 cm–1 at different concentrations of dT25(CdT). (A) CdT = 50 nM in H2O; (B) CdT = 100 nM in H2O; (C) CdT = 250 nM in H2O; (D) CdT = 50 nM in D2O; (E) CdT = 100 nM in D2O; (F) CdT = 100 nM in D2O.
Spectra Assignments of dT25 Molecules
| peaks (cm–1) | assignments |
|---|---|
| ∼1060 | ribose C–C stretching |
| ∼1090 | PO2– symmetric stretching |
| ∼1150 | ribose C–O–C stretching |
| ∼1600 | tris δ-NH2 bending |
| ∼1650 | dT C4=O and C=C out-of phase |
| ∼1660 | dT C4=O and C=C in-phase |
| ∼1730 | C2=O stretching |
| ∼2350 | OD stretching of D2O |
| ∼2550 | |
| ∼2720 | |
| ∼3060 | dT C6–H stretching |
| ∼3140 | dT N3–H stretching |
| ∼3200 | OH stretching of H2O, dT, and tris molecules |
| ∼3400 | |
| ∼3600 |
Check Figure S6 for the corresponding atoms of thymidine molecule.
Figure 3Concentration dependence of SFG susceptibilities (|χ(2)| = |Aq/Γq) and peak center wavenumbers (ω0) of thymine groups (A–C) and PO2– groups (D–F). (A) χppp(2) and χssp(2) of C4=O and C5=C6 in-phase 0° stretching mode in H2O solutions; (B) χppp(2) and χssp(2) of C4=O and C5=C6 in-phase 0° stretching mode in D2O solutions; (C) ω0 of C4=O and C5=C6 in-phase 0° stretching mode in H2O and D2O solutions; (D) χppp(2) and χssp(2) of symmetric PO2– stretching mode in H2O solutions; (E) χppp(2) and χssp(2) of symmetric PO2– stretching mode in D2O solutions; (F) ω0 of symmetric PO2– stretching mode.
Fitting Parameters Calculated from Figure A–C (H2O) and Figure D–F (D2O)
| 50 nM | 100 nM | 250 nM | ||||
|---|---|---|---|---|---|---|
| H2O | ||||||
| 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
| 0.48 | 0.84 | 1.06 | 0.73 | 1.41 | 1.42 | |
| χ1 | 0.6 | –0.1 | 1.3 | 0.2 | 1.3 | –0.2 |
| ω1 | 1599.0 | 1592.2 | 1602.1 | |||
| τ1 | 22.0 | 11.6 | 25.9 | |||
| χ2 | –0.2 | 0.0 | –0.8 | 0.5 | –0.8 | –0.1 |
| ω2 | 1648.8 | 1650.8 | 1650.3 | |||
| 6.6 | 8.6 | 6.6 | ||||
| χ3 | 1.6 | 0.7 | 4.3 | 0.5 | 4.3 | 1.7 |
| ω3 | 1661.1 | 1660.3 | 1660.2 | |||
| τ3 | 22.9 | 12.9 | 19.9 | |||
| χ4 | –1.4 | –2.2 | –3.3 | –1.7 | –3.3 | –3.3 |
| ω3 | 1735.6 | 1728.8 | 1734.7 | |||
| τ3 | 35.3 | 31.8 | 24.7 | |||
| χNR | –4.46 | 1.87 | 2.63 | 3.93 | 5.63 | 8.02 |
| D2O | ||||||
| –0.08 | 0.03 | –0.07 | –0.01 | 0.00 | –0.04 | |
| 0.19 | 0.27 | 0.43 | 0.43 | –0.40 | –0.20 | |
| χ1 | –0.2 | –3.1 | 7.5 | 0.3 | –20.3 | 0.0 |
| ω1 | 1635.0 | 1630.8 | 1653.1 | |||
| τ1 | 7.4 | 22.1 | 8.5 | |||
| χ2 | 1.0 | 0.8 | 1.7 | 1.7 | 0.9 | |
| ω2 | 1663.9 | 1663.1 | 1664.6 | |||
| 12.8 | 12.6 | 18.5 | ||||
| χ3 | 1.0 | 0.2 | 1.4 | –3.8 | 1.4 | 3.3 |
| ω3 | 1759.7 | 1750.0 | 1804.3 | |||
| τ3 | 113.7 | 50.6 | 54.2 | |||
| χNR | 0.00 | 0.04 | –0.23 | 0.05 | 0.08 | 0.32 |
Fitting Parameters Calculated from Figure A–C (H2O) and Figure D–F (D2O)
| 50 nM | 100 nM | 250 nM | ||||
|---|---|---|---|---|---|---|
| H2O | ||||||
| –0.26 | 0.22 | 0.92 | –0.11 | –0.21 | 0.20 | |
| 0.14 | –0.31 | –1.11 | –0.05 | 0.27 | 0.36 | |
| χ1 | –0.38 | 0.35 | 0.52 | 0.15 | 0.19 | 0.00 |
| ω1 | 1069.1 | 1057.1 | 1055.9 | |||
| τ1 | 4.8 | 28.0 | 19.4 | |||
| χ2 | –0.56 | 1.06 | 0.15 | –0.36 | –0.05 | 0.24 |
| ω2 | 1090.5 | 1094.6 | 1092.6 | |||
| 9.1 | 9.1 | 9.1 | ||||
| χ3 | 0.62 | –0.11 | ||||
| ω3 | 1156.1 | |||||
| τ3 | 54.1 | |||||
| χNR | –0.56 | 0.00 | –0.08 | 0.02 | –0.10 | –0.03 |
| D2O | ||||||
| 0.13 | 0.19 | –0.10 | –0.10 | –0.03 | –0.18 | |
| 0.01 | –0.10 | –0.05 | –0.35 | 0.00 | –0.03 | |
| χ1 | 0.22 | –0.02 | 0.31 | 1.04 | 0.46 | 0.64 |
| ω1 | 1045.1 | 1059.8 | 1057.5 | |||
| τ1 | 6.7 | 6.9 | 10.1 | |||
| χ2 | 0.23 | 0.61 | –0.19 | –0.36 | 0.10 | –1.28 |
| ω2 | 1094.0 | 1087.4 | 1092.8 | |||
| 12.6 | 10.2 | 10.7 | ||||
| χ3 | 0.10 | 0.17 | 0.04 | –0.04 | –0.04 | –0.13 |
| ω3 | 1154.9 | 1134.2 | 1152.1 | |||
| τ3 | 6.0 | 11.3 | 6.7 | |||
| χNR | 0.02 | 0.00 | –0.01 | –0.12 | 0.04 | –0.01 |
Figure 2SFG spectra of DMTAP bilayers in the wavenumber range of 1000–1200 cm–1 at different CdT. (A) CdT = 50 nM in H2O; (B) CdT = 100 nM in H2O; (C) CdT = 250 nM in H2O; (D) CdT = 50 nM in D2O; (E) CdT = 100 nM in D2O; (F) CdT = 250 nM in D2O.
Figure 4Left: SFG spectra in the wavenumber range of 2800–3800 cm–1 at different concentrations of dT25/H2O solution; (A) CdT = 0 nM (bilayer only); (B) CdT = 25 nM; (C) CdT = 100 nM; (D) CdT = 250 nM. Right: SFG spectra in the wavenumber range of 2000–2800 cm–1 at different concentrations of dT25/D2O solution; (E) CdT = 0 nM (bilayer only); (F) CdT = 25 nM; (G) CdT = 75 nM; (H) CdT = 250 nM.
Figure 6Concentration dependence of calculated tilt angle of (A) in-phase C4=O and C5=C6 stretching mode at ∼1660 cm–1 (θDThymine) and (B) symmetric PO2– stretching at ∼1090 cm–1 (θDPO) in D2O solution.
Figure 5Concentration dependence of (A) peak widths (Γq) and (B) effective polarizabilities of OD stretching (|POD(2)| = |Assp,OD/Γ|).
Scheme 1Experimental Setup of Polarization-Resolved SFG-VS Detection
PS: polarization splitter, GP: Glan laser polarizer, HWP: half-wave plate, HWP-M: motorized half-wave plate; F: filter, L: lens.