| Literature DB >> 30018949 |
Hana Elshaflu1, Tamara R Todorović2, Milan Nikolić2, Aleksandar Lolić2, Aleksandar Višnjevac3, Stefanie Hagenow4, José M Padrón5, Alfonso T García-Sosa6, Ivana S Djordjević7, Sonja Grubišić7, Holger Stark4, Nenad R Filipović8.
Abstract
The novel approach in the treatment of complex multifactorial diseases, such asEntities:
Keywords: Anticancer activity; Antioxidant agents; Docking; MAO B; selenazoles
Year: 2018 PMID: 30018949 PMCID: PMC6037691 DOI: 10.3389/fchem.2018.00247
Source DB: PubMed Journal: Front Chem ISSN: 2296-2646 Impact factor: 5.221
Figure 1Synthesis of benzylidene-based (1,3-selenazol-2-yl) hydrazones studied in this work.
Figure 2ORTEP drawings of the molecular structures of 4-Me (A) and 4-OMe (B) with non-H atoms labeling. Displacement ellipsoids are shown at the 50% probability level and H atoms are drawn as spheres of arbitrary radii. Crystal packing diagrams of 4-Me (C) and 4-OMe (D).
Selected experimentally obtained (XRD) and calculated (DFT) bond lengths (Å) and angles (°) for 4-Me and 4-OMe.
| C7–C9 | 1.475(5) | 1.476 | 1.475(3) | 1.476 |
| C8–C9 | 1.353(5) | 1.368 | 1.351(3) | 1.369 |
| C8–Se1 | 1.871(5) | 1.874 | 1.873(2) | 1.876 |
| C9–N10 | 1.388(4) | 1.391 | 1.391(2) | 1.391 |
| C11–N10 | 1.300(5) | 1.291 | 1.290(2) | 1.292 |
| C11–N12 | 1.348(5) | 1.375 | 1.361(3) | 1.375 |
| C11–Se1 | 1.872(4) | 1.887 | 1.8808(19) | 1.886 |
| C14–N13 | 1.277(4) | 1.290 | 1.271(3) | 1.290 |
| C14–C17 | 1.451(4) | 1.459 | 1.463(3) | 1.459 |
| N12–N13 | 1.358(4) | 1.338 | 1.354(2) | 1.337 |
| N21–O23 | 1.212(5) | 1.232 | 1.214(3) | 1.232 |
| N21–O22 | 1.218(6) | 1.232 | 1.222(3) | 1.232 |
| C9–C8–Se1 | 111.6(3) | 111.16 | 111.86(16) | 111.60 |
| C8–C9–N10 | 116.0(3) | 116.20 | 116.55(18) | 116.20 |
| C8–C9–C7 | 126.9(3) | 125.90 | 125.85(19) | 126.00 |
| N10–C9–C7 | 117.1(3) | 117.90 | 117.59(17) | 117.80 |
| N10–C11–N12 | 121.3(3) | 122.10 | 124.32(18) | 122.00 |
| N10–C11–Se1 | 115.2(3) | 116.30 | 116.57(15) | 116.30 |
| N12–C11–Se1 | 123.6(3) | 121.70 | 119.11(14) | 121.70 |
| N13–C14–C17 | 121.8(3) | 121.20 | 119.71(19) | 121.10 |
| C11–N10–C9 | 113.4(3) | 112.80 | 112.22(16) | 112.80 |
| C11–N12–N13 | 120.4(3) | 120.60 | 117.09(17) | 120.60 |
| C14–N13–N12 | 115.4(3) | 119.10 | 118.96(17) | 119.10 |
| O23–N21–O22 | 122.6(4) | 124.60 | 123.6(2) | 124.60 |
| O23–N21–C20 | 119.0(4) | 117.70 | 118.4(2) | 117.70 |
| O22–N21–C20 | 118.4(4) | 117.70 | 118.0(2) | 117.70 |
| C8–Se1–C11 | 83.76(16) | 83.20 | 82.79(9) | 83.20 |
Figure 3Structural superposition of 4-Me (yellow) and 4-OMe (red).
Voltammetric characteristics of the the benzylidene-based (1,3-selenazol-2-yl)hydrazones.
| / | / | / | / | −1.45 | 2.1 | / | / | +0.33 | 39.1 | −4.90 | −5.34 | |
| / | / | / | / | −1.50 | 2.9 | / | / | +0.28 | 38.4 | −4.85 | −5.20 | |
| / | / | / | / | −1.59 | 2.3 | / | / | +0.31 | 26.6 | −4.88 | −5.30 | |
| −1.26 | 6.8 | −1.27 | 4.1 | −1.46 | 5.3 | −1.39 | 12.7 | +0.40 | 23.2 | −4.97 | −5.49 | |
| −1.27 | 13.2 | −1.23 | 2.3 | −1.49 | 6.6 | −1.39 | 13.9 | +0.36 | 24.0 | −4.93 | −5.31 | |
| −1.25 | 11.3 | −1.26 | 3.6 | −1.47 | 10.6 | −1.40 | 15.5 | +0.43 | 23.0 | −5.00 | −5.43 | |
| −1.18 | 10.7 | −1.20 | 4.2 | −1.40 | 16.8 | −1.33 | 22.2 | +0.42 | 25.7 | −4.99 | −5.51 | |
| −1.20 | 4.2 | −1.19 | 5.4 | −1.40 | 17.9 | −1.33 | 4.3 | +0.42 | 18.9 | −4.99 | −5.32 | |
| −1.21 | 13.1 | −1.19 | 4.6 | −1.44 | 14.9 | −1.32 | 21.3 | +0.42 | 20.2 | −4.99 | −5.45 | |
| −1.29 | 25.3 | / | / | −1.38 | 3.5 | −1.32 | 21.3 | +0.41 | 35.8 | −4.98 | −5.46 | |
| −1.27 | 25.3 | / | / | −1.39 | 2.4 | −1.32 | 19.4 | +0.40 | 34.8 | −4.97 | −5.28 | |
| −1.30 | 26.2 | / | −1.39 | 2.2 | −1.31 | 18.9 | +0.37 | 33.5 | −4.94 | −5.40 |
In DMSO containing 0.1 M TBAP at v = 100 mV/s.
E vs ferrocene/ferrocenium couple (Fc/Fc+) in V.
In μA/mM(V/s)1/2;
in eV.
E.
Figure 4Cyclic voltammograms of 1 and 2 (A) and 3 and 4 (B).
Calculated energies of the HOMO and LUMO orbitals and energy gap (in eV) for E-(1,3-selenazol-2-yl)hydrazones in DMSO obtained by TD/DFT method.
| −1.55 | −5.34 | 3.79 | |
| −1.54 | −5.30 | 3.76 | |
| −1.53 | −5.20 | 3.66 | |
| −2.71 | −5.49 | 2.78 | |
| −2.71 | −5.43 | 2.72 | |
| −2.70 | −5.31 | 2.61 | |
| −2.79 | −5.51 | 2.72 | |
| −2.79 | −5.45 | 2.66 | |
| −2.79 | −5.32 | 2.54 | |
| −2.67 | −5.46 | 2.79 | |
| −2.67 | −5.40 | 2.73 |
Figure 5Molecular orbital plots and energy levels of the HOMO, the LUMO, and HOMO-LUMO transitions of the benzylidene-based (1,3-selenazol-2-yl) hydrazones in DMSO.
Monoamine oxidase (MAO) A/B inhibition capacities of benzylidene-based (1,3-selenazol-2-yl)hydrazones.
| −6.8 ± 12.6 | 89.4 ± 1.5 | |
| 12.7 ± 3.5 | 23.4 ± 17.1 | |
| 32.4 ± 3.3 | 33.0 ± 11.6 | |
| 26.5 ± 3.7 | 64.8 ± 6.1 | |
| 17.2 ± 1.9 | 22.1 ± 8.7 | |
| 28.0 ± 4.0 | 35.9 ± 11.2 | |
| 32.7 ± 6.2 | 57.5 ± 11.4 | |
| 13.4 ± 2.4 | 7.4 ± 27.0 | |
| 31.2 ± 1.6 | 23.8 ± 7.7 | |
| 71.9 ± 3.5 | 96.3 ± 0.5 | |
| 22.1 ± 2.1 | 48.1 ± 2.9 | |
| 49.4 ± 1.3 | 42.5 ± 19.0 | |
Percental inhibition calculated from remained enzyme activity normalized to control (= 100%). Values are given as means ± standard deviations (n = 2, global fit).
Antioxidant capacity of investigated benzylidene-based (1,3-selenazol-2-yl)hydrazones and the standard.
| 8.63 ± 1.66 | 648 ± 55 | 990 ± 92 | 0.75 ± 0.05 | |
| 54.26 ± 4.54 | 548 ± 53 | 806 ± 85 | 0.74 ± 0.06 | |
| 45.06 ± 6.53 | 603 ± 61 | 966 ± 88 | 0.65 ± 0.07 | |
| 21.9 ± 5.6 | 357 ± 41 | 390 ± 48 | 0.82 ± 0.07 | |
| 40.5 ± 3.8 | 433 ± 39 | 560 ± 53 | 0.82 ± 0.07 | |
| 20.2 ± 4.3 | 416 ± 45 | 470 ± 41 | 0.77 ± 0.05 | |
| 173.5 ± 11.6 | 325 ± 38 | 420 ± 45 | 0.90 ± 0.06 | |
| 298.1 ± 14.8 | 632 ± 50 | 488 ± 46 | 0.86 ± 0.07 | |
| 151.6 ± 10.1 | 571 ± 45 | 480 ± 50 | 0.83 ± 0.05 | |
| 44.8 ± 2.3 | 433 ± 43 | 376 ± 51 | 0.92 ± 0.08 | |
| 79.2 ± 3.9 | 645 ± 53 | 398 ± 44 | 0.92 ± 0.07 | |
| 40.1 ± 4.7 | 579 ± 51 | 495 ± 48 | 0.92 ± 0.07 | |
| vitamin C | 79.1 ± 1.8 | 140 ± 10 | 155 ± 39 | 0.97 ± 0.07 |
IC50, concentration providing 50% of radicals scavenging activity.
EC.
Antiproliferative activities of benzylidene-based (1,3-selenazol-2-yl)hydrazones.
| 28.0 ± 7.1 | 91 ± 12 | 41.0 ± 9.5 | 24 ± 8 | 6.4 ± 0.9 | 4.8 ± 0.8 | n.d. | |
| n.d. | n.d. | n.d. | 47 ± 3 | n.d. | n.d. | n.d. | |
| n.d. | n.d. | n.d. | 42.0 ± 7.7 | n.d. | n.d. | n.d. | |
| 4.9 ± 1.5 | 21.0 ± 8.6 | 6.0 ± 0.7 | 5.3 ± 0.6 | 12.0 ± 1.5 | 5.0 ± 0.9 | n.d. | |
| 8.8 ± 2.2 | 95.0 ± 8.1 | 7.4 ± 1.4 | 4.6 ± 1.2 | 13.0 ± 1.3 | 8.2 ± 1.0 | n.d. | |
| 22.0 ± 5.6 | n.d. | 49 ± 12 | 46 ± 10 | 36 ± 8.6 | 22.0 ± 2.3 | n.d. | |
| 6.1 ± 0.8 | 28.0 ± 0.8 | 24.0 ± 7.1 | 16.0 ± 4.8 | 52 ± 13 | 40.0 ± 0.6 | n.d. | |
| 44 ± 15 | 60.0 ± 9.5 | 31.0 ± 4.0 | 18.0 ± 4.5 | 46.0 ± 9.7 | 55 ± 19 | n.d. | |
| 52 ± 1 | n.d. | 26 ± 2 | 8.4 ± 0.2 | 67.0 ± 2.2 | n.d. | n.d. | |
| 16.0 ± 3.5 | n.d. | 31.0 ± 8.5 | 23.0 ± 1.2 | 6.3 ± 1.1 | 6.9 ± 1.3 | n.d. | |
| n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | n.d. | |
| 16.0 ± 5.3 | 47 ± 13 | 33 ± 10 | 26 ± 17 | 66 ± 17 | n.d. | n.d. | |
| 5-fluorouracil | n.d. | 4.0 ± 0.7 | 15.0 ± 4.7 | 4.6 ± 1.5 | 47 ± 18 | 49.0 ± 6.7 | 5.5 ± 0.5 |
n.d, not determined (GI.
Pharmacological profiles, medicinal chemistry principles and lead-likeness properties of compounds 1, 4, 2 and 2-Me.
| Molecular weight | 326.25 | 371.25 | 371.25 | 385.28 |
| #Heavy atoms | 20 | 23 | 23 | 24 |
| #Aromatic heavy atoms | 17 | 17 | 17 | 17 |
| Fraction Csp3 | 0 | 0 | 0 | 0.06 |
| #Rotatable bonds | 4 | 5 | 5 | 5 |
| #H-bond acceptors | 2 | 4 | 4 | 4 |
| #H-bond donors | 1 | 1 | 1 | 1 |
| Molar Refractivity | 84.09 | 92.91 | 92.91 | 97.88 |
| Topological Polar Surface Area (TPSA-Å2) | 37.28 | 83.1 | 83.1 | 83.1 |
| ClogPo/w | 2.07 | 1.54 | 1.54 | 1.82 |
| GI absorption | ++ | ++ | ++ | ++ |
| BBB permeant | + | – | – | – |
| Pgp substrate | + | – | – | – |
| CYP1A2 inhibitor | – | + | + | + |
| CYP2C19 inhibitor | – | + | + | + |
| CYP2C9 inhibitor | – | – | – | – |
| CYP2D6 inhibitor | + | – | – | – |
| CYP3A4 inhibitor | – | – | – | – |
| log Kp (cm/s) | −5.98 | −6.38 | −6.38 | −6.2 |
| Lipinski #violations | 0 | 0 | 0 | 0 |
| Ghose#violations | 0 | 0 | 0 | 0 |
| Veber#violations | 0 | 0 | 0 | 0 |
| Egan #violations | 0 | 0 | 0 | 0 |
| Muegge#violations | 0 | 0 | 0 | 0 |
| Bioavailability score | 0.55 | 0.55 | 0.55 | 0.55 |
| PAINS #alerts | 0 | 0 | 0 | 0 |
| Leadlikeness | Yes | Yes | Yes | Yes |
| Synthetic accessibility | 3.63 | 3.62 | 3.71 | 3.81 |
++ high;
+ activity;
– no activity.
Docking scores (kcal/mol) for compounds and co-crystallized ligands in neurodegenerative and cancer related proteins.
| −8.5 | −10.3 | |
| −8.4 | −10.7 | |
| lig5wbx | – | −8.1 |
| lig4crt | −6.4 | – |
| 1ipb/EIF4E | 4h2b/5-NT | |
| −10.0 | −9.2 | |
| −9.5 | −9.0 | |
| lig1ipb | – | −10.3 |
| lig4h2b | −9.7 | – |
Scores for co-crystallized ligands are shown in italic.
Figure 6(A) Binding site of MAO B in white with co-crystallized ligand ASS234 ((E)-N-methyl-N-[[1-methyl-5-[3-[1-(phenylmethyl) piperidin-4-yl]propoxy]indol-2-yl]methyl]prop-1-en-1-amine). (B) Binding site of KCNN1 small conductance calcium-activated potassium channel protein 1 in white with co-crystallized ligand AJY; (3Z)-6-bromo-3-(hydroxyimino)-5-methyl-1,3-dihydro-2H-indol-2-one. In each case compounds 1 in cyan and 4 in magenta. Residues forming interactions shown in stick, with hydrophobic interaction groups shown in pink, electrostatic interaction in green, and both hydrophobic and electrostatic in orange. Hydrogen bonds shown as dashed lines; nitrogen in blue, oxygen in red, sulfur and selenium in yellow.
Figure 7(A) Binding site of eukaryotic translation factor 4E in white with co-crystallized ligand GTA; P1-7-methylguanosine-P3-adenosine-5′,5′-triphosphate. (B) Binding site of 5′ nucleotidase in white with co-crystallized ligand 0XE; 5,6-dihydroxy-4-oxo-2-phenyl-4H-chromen-7-yl beta-D-glucopyranosiduronic acid; Baicalin. In each case compounds 2-Me in cyan and 2 in magenta. Residues forming interactions shown in stick, with hydrophobic interaction groups shown in pink, electrostatic interaction in green, and both hydrophobic and electrostatic in orange. Hydrogen bonds shown as dashed lines; nitrogen in blue, oxygen in red, sulfur and selenium in yellow.