| Literature DB >> 30018875 |
Ondřej Koukol1, Gregorio Delgado2,3, Tina A Hofmann4, Meike Piepenbring3.
Abstract
Five new species belonging to Hermatomyces (Hermatomycetaceae, Pleosporales) are described based on morphological investigations of specimens collected on rotten twigs and stems of various plants in Panama as well as phylogenetic analyses of sequence data of nuclear ribosomal and protein coding genes (EF1-α, RPB2, β-TUB). The new species are described as:Entities:
Keywords: Dothideomycetes; Neotropical fungi; lowland tropical forest; new taxa
Year: 2018 PMID: 30018875 PMCID: PMC6048574 DOI: 10.5598/imafungus.2018.09.01.08
Source DB: PubMed Journal: IMA Fungus ISSN: 2210-6340 Impact factor: 3.515
Living cultures included in this study, their collection details and GenBank accession numbers.
| ARIZ:PS0053 | Panama | KU977564 | - | - | - | - | Unpublished | ||
| CBS 123095 | France | LC194474 | - | - | - | - | |||
| IFRDCC 2053 | unknown | unknown | - | GU301805 | - | - | - | ||
| CCF 5899 (PRM 946196) | Panama | unknown shrub | LS398262 | LS398262 | LS398416 | LS398343 | LS398441 | This study | |
| CCF 5900 (PMA 116075) | Panama | unknown shrub | LS398263 | LS398263 | LS398417 | LS398344 | LS398442 | This study | |
| MFLUCC 16-2817 | Thailand | - | KY559394 | - | - | - | |||
| MFLUCC 16-2818 | Thailand | - | KY559393 | - | - | - | |||
| CCF 5904 (PMA 116076, PRC 4107) | Panama | LS398264 | LS398264 | LS398418 | LS398345 | LS398443 | This study | ||
| MFLUCC 14-1143 | Thailand | KU144920 | KU764692 | KU872754 | KU712488 | - | Doilom | ||
| MFLUCC 14-1144 | Thailand | KU144921 | KU764693 | KU872755 | KU712489 | - | Doilom | ||
| MFLUCC 14-1145 | Thailand | KU144922 | KU764694 | KU872756 | KU712490 | - | Doilom | ||
| KT 2016-1 | Japan | woody plant | LC194483 | LC194367 | LC194394 | LC194449 | - | ||
| MFLUCC 16-0249 | Thailand | KX525750 | KX525742 | KX525758 | KX525754 | - | |||
| CCF 5897 (PRM 946198) | Panama | unknown shrub | LS398265 | - | LS398419 | LS398346 | LS398444 | This study | |
| CCF 5898 (PMA 116077) | Panama | unknown shrub | LS398266 | LS398266 | LS398420 | - | LS398445 | This study | |
| KUMCC 16-0149 | P.R. China | KY766058 | KY766059 | KY766061 | - | - | |||
| MFLUCC 16-0251 | Thailand | KX525751 | KX525743 | KX525759 | KX525755 | - | |||
| CCF 5893 (PRM 946199) | Panama | unknown tree | LS398267 | LS398267 | LS398421 | LS398347 | LS398446 | This study | |
| CCF 5905 (PMA 116078) | Panama | unknown tree | LS398268 | LS398268 | LS398422 | LS398348 | - | This study | |
| MFLUCC 15-0843 | Thailand | woody plant | KX259521 | KX259523 | KX259527 | KX259529 | - | ||
| MFLUCC 16-0266 | Thailand | KX525748 | KX525740 | KX525756 | KX525752 | - | |||
| MFLUCC 16-0267 | Thailand | KX525749 | KX525741 | KX525757 | KX525753 | - | |||
| CCF 5896 (PRC 4103) | Panama | unknown liana | LS398271 | - | LS398425 | LS398351 | LS398448 | This study | |
| KZP 470 (UCH) | Panama | unknown liana | LS398274 | - | LS398428 | LS398353 | LS398451 | This study | |
| CCF 5908 (PMA 116079) | Panama | unknown tree | LS398273 | LS398273 | LS398427 | LS398352 | LS398450 | This study | |
| CCF 5907 (PRM 946200) | Panama | unknown tree | LS398272 | - | LS398426 | - | LS398449 | This study | |
| CCF 5895 (PRC 4102) | Panama | LS398270 | LS398270 | LS398424 | LS398350 | LS398447 | This study | ||
| CCF 5894 (PRC 4100) | Panama | Arecaceae | LS398277 | LS398277 | LS398429 | LS398354 | LS398452 | This study | |
| CCF 5901 (PRC 4104) | Panama | unknown liana | LS398278 | - | LS398430 | LS398355 | LS398453 | This study | |
| CCF 5902 (PRC 4106) | Panama | unknown liana | LS398279 | LS398279 | - | - | - | This study | |
| KZP455 (PRC 4116) | Panama | LS398275 | LS398275 | - | - | - | This study | ||
| KZP469 (PRC 4117) | Panama | unknown tree | LS398276 | - | - | - | - | This study | |
| CCF 5911 (PMA 116080) | Panama | unknown tree | LS398281 | LS398281 | LS398431 | LS398356 | LS398454 | This study | |
| CCF 5914 (PMA 116081) | Panama | unknown tree | LS398283 | LS398283 | LS398432 | LS398357 | LS398455 | This study | |
| CCF 5916 (PRM 946201) | Panama | unknown liana | LS398284 | LS398284 | LS398433 | LS398358 | LS398456 | This study | |
| CCF 5917 (PMA 116082) | Panama | unknown tree | LS398285 | - | - | - | - | This study | |
| KZP 460 (PRC 4105) | Panama | unknown tree | LS398286 | LS398286 | - | - | - | This study | |
| KZP 462 (UCH) | Panama | unknown tree | LS398287 | LS398287 | LS398434 | LS398359 | LS398457 | This study | |
| CCF 5906 (PMA 116085) | Panama | unknown liana | LS398280 | - | - | - | - | This study | |
| KZP 441 (UCH) | Panama | LS398282 | - | - | - | - | This study | ||
| MFLUCC 14-1140 | Thailand | KU144917 | KU764695 | KU872757 | KU712486 | - | Doilom | ||
| MFLUCC 14-1141 | Thailand | KU144918 | KU764696 | KU872758 | - | - | Doilom | ||
| MFLUCC 14-1142 | Thailand | KU144919 | KU764697 | - | KU712487 | - | Doilom | ||
| CCF 5912 (UCH) | Panama | unknown tree | LS398288 | LS398288 | LS398435 | LS398360 | LS398458 | This study | |
| CCF 5913 (PMA 116083) | Panama | unknown tree | LS398289 | LS398289 | LS398436 | LS398361 | LS398459 | This study | |
| CCF 5915 (PRM 946202) | Panama | LS398290 | LS398290 | LS398437 | LS398362 | LS398460 | This study | ||
| CCF 5892 (PRM 946203) | Panama | unknown tree | LS398291 | LS398291 | LS398438 | LS398363 | LS398461 | This study | |
| CCF 5903 (PMA 116084) | Panama | unknown liana | LS398292 | LS398292 | LS398439 | LS398364 | LS398462 | This study | |
| KT 856 | Japan | AB524786 | - | - | - | AB524848 | Tanaka | ||
| KT 2200 | Japan | AB524787 | - | - | - | - | Tanaka | ||
| CBS 113975 | Sweden | LC194502 | - | LC194415 | FJ795461 | - | |||
Abbreviations: CBS: Westerdijk Fungal Biodiversity Institute, Utrecht, The Netherlands; CCF: Culture Collection of Fungi, Charles University, Prague, Czech Republic; IFRDCC: International Fungal Research & Development Centre Culture Collection, Chinese Academy of Forestry, Kunming, China; KT: Kazuaki Tanaka, Hirosaki, Japan; KUMCC: Kunming Institute of Botany Culture Collection, Kunming, China; MFLUCC: Mae Fah Luang University Culture Collection, Chiang Rai, Thailand; PMA: Herbarium of the University of Panama, Panama City, Panama; UCH: Herbarium of the Antonomous University of Chiriquí, David, Panama; PRC: Herbarium of the Charles University, Prague, Czech Republic; PRM: Herbarium of the National Museum, Prague, Czech Republic.
Characteristics of alignments of studied gene regions and the models adopted for Bayesian analyses.
| DNA region | #sequences | #nucleotide sites | #parsimony informative | #variable | Model (BIC criterion) |
|---|---|---|---|---|---|
| ITS | 47 | 467 | 102 | 135 | TIM2ef+G |
| LSU | 37 | 513 | 25 | 43 | TrNef+I |
| RPB2 | 43 | 1011 | 211 | 273 | TrNef+G |
| EF1-α | 45 | 872 | 121 | 165 | TrN+I+G |
| β-TUB | 25 | 615 | 112 | 205 | TrNef+I |
Fig. 1.Phylogenetic trees inferred from Bayesian and ML analyses of the genus Hermatomyces based on ITS, LSU, RPB2, EF1-α and β-TUB and including five newly described Hermatomyces taxa. Numbers above branches represent PP>0.5 and ML bootstrap support values BS>90 %. Ex-type living cultures are indicated by superscript letter: H – holotype.
Fig. 2.Species trees from Bayesian analysis of combined dataset of ITS, LSU, RPB2, EF1-α and β-TUB. A. Consensus topology resulting from the *BEAST analysis. Numbers above branches represent PP>0.5. B. Vizualization of 8 000 trees with green lines representing the most likely topologies obtained from DensiTree.
Fig. 4.Hermatomyces bifurcatus (PMA 116075 – holotype). A. Colonies on the natural substrate. B. Subicular hyphae. C. Conidiogenous cells and young lenticular conidium. D–F. Cylindrical conidia (stained with lacto-cotton blue at D). G. Cylindrical and lenticular conidium. H–K. Lenticular conidia. Bar A = 500 μm, B–K = 10 μm.
Fig. 13.Hermatomyces species as seen by scanning electron microscope. A, D, G, J. H. bifurcatus (PRM 946196). B, E, H, K. H. constrictus (PRC 4107). C, F, I, L.. H. megasporus (PMA 116077 – holotype). Colony on the substrate, subicular hyphae, conidia, detail of conidia (from top to bottom). Bar A–B = 50 μm, C = 200 μm, D–L = 10 μm.
Fig. 16.Species of Hermatomyces with two conidium types, visual guide. A. H. amphisporus. B. H. bifurcatus. C. H. constrictus. D. H. dimorphus. E. H. indicus. F. H. iriomotensis. G. H. krabiensis. H. H. megasporus. I. H. nabanheensis. J. H. pandanicola. K. H. tucumanensis. L. H. uniseriatus. Bar = 20 μm.
Fig. 3.Morphology of Hermatomyces colonies in culture. A–C. H. bifurcatus (CCF 5899). D–F. H. constrictus (CCF 5904). G‐–I. H. megasporus (CCF 5898). J–L. H. reticulatus (CCF 5893). M–O. H. sphaericoides (CCF 5908). P–R. H. sphaericus (CCF 5894). S–U. H. tucumanensis (CCF 5913). V–X. H. verrucosus (CCF 5903). All after 7 d growth at 25 ºC on MEA, PCA or PDA (from left to right).
Fig. 18.Mean length/width ratios of lenticular conidia of Hermatomyces species collected in Panama. Species with one conidium type are indicated by gray boxes. Letters above the boxes indicate significant differences (P<0.05) obtained from non-parametric Kruskal-Wallis comparison.
Fig. 5.Hermatomyces constrictus (PMA 116076 – holotype). A. Colonies on the natural substrate. B. Subicular hyphae. C. Young lenticular conidium attached to conidiophore (stained with lacto-cotton blue). D–E. Cylindrical conidia (stained with lacto-cotton blue). F–G. Cylindrical and lenticular conidia. H, J–K. Lenticular conidia. I. Mature lenticular conidium attached to conidiophore (stained with lacto-cotton blue). Bar A = 500 μm, B–G, I–K = 10 μm, H = 20 μm.
Fig. 6.Hermatomyces megasporus (PMA 116077 – holotype). A. Colonies on the natural substrate showing well-developed subiculum. B. Subicular hyphae. C–E. Cylindrical conidia. F–J. Lenticular conidia. Bar A = 500 μm, B–J = 20 μm.
Fig. 7.Hermatomyces reticulatus (PMA 116078 – holotype). A. Colonies on the natural substrate showing well-developed subiculum. B. Subicular hyphae. C–G. Young lenticular conidia (stained with lacto-cotton blue at C–E). H–K. Mature lenticular conidia. L–M. Envelope and content of the holotype of Subicularium reticulatum (BPI 1100692). N. Colonies on the natural substrate. O. Young conidium (stained with lacto-cotton blue). P–R. Mature conidia (stained with lacto-cotton blue at Q). Bar A = 500 μm, B–G = 10 μm, H–K = 20 μm, N = 500 μm, O = 10 μm, P–R = 20 μm.
Fig. 14.Hermatomyces species as seen by scanning electron microscope. A, D, G, J. H. reticulatus (PMA 116078). B, E, H, K. H. sphaericoides (PMA 116079 – holotype). C, F, I, L. H. sphaericus (PRC 4106) (from left to right). Colony on the substrate, subicular hyphae, conidia, detail of conidia (from top to bottom). Bar A–B = 50 μm, C = 200 μm, D–L = 10 μm.
Fig. 17.Species of Hermatomyces with one conidium type, visual guide. A. H. reticulatus. B. H. sphaericoides. C. H. sphaericus. D. H. verrucosus. Bar = 20 μm.
Fig. 8.Hermatomyces sphaericoides (PMA 116079 – holotype) A. Colonies on the natural substrate. B–C. Subicular hyphae. D. Conidiogenous cells and young conidia. E–G. Young conidia. H–K. Mature conidia. L–N. Conidia on PDA. Bar A = 500 μm, B = 20 μm, C–L = 10 μm, M = 20 μm, N = 10 μm.
Fig. 9.Hermatomyces sphaericus (PMA 116080) A–B. Colonies on the natural substrate showing morphological variability. C. Subicular hyphae. D–G. Young conidia. H–K. Mature conidia. L. Young conidia on PDA (stained with lacto-cotton blue at L–M). M–O. Mature conidia on PDA. Bar A–B = 500 μm, C–L = 10 μm, M = 20 μm, N–O = 10 μm.
Fig. 10.Revised fungarium collections of Hermatomyces sphaericus A. Envelope of the holotype of Stemphylium sphaericum (K(M) IMI 37763). B–D. Mature conidia. E. Envelope of collection PRM 842348. F. Content of the envelope including remarks on morphology. G–I. Mature conidia. J. Envelope of collection PRM 838101. K. Colony on the substrate. L–M. Mature conidia. Bar B–D = 10 μm, G–I = 10 μm, K = 500 μm, L–M = 10 μm.
Fig. 11.Hermatomyces tucumanensis (PMA 116083) A. Colonies on the natural substrate. B. Conidiogenous cells, young conidia and subicular hyphae. C. Young cylindrical conidia. D–F. Cylindrical conidia with still attached conidiogenous cell and conidiophore. G–J. Lenticular conidia. K. Envelope and content of the holotype of Scyphostroma mirum (BPI 697801). L. Colonies on the natural substrate. M. Lenticular conidium. N. Fragment of cylindrical conidium. Bar A = 500 μm, B–C = 20 μm, D–J = 10 μm, L = 500 μm, M–N = 10 μm.
Fig. 15.Hermatomyces species as seen by scanning electron microscope. A, C, E, G. H. tucumanensis (PMA 116083). B, D, F, H. H. verrucosus (PRM 946203) (from left to right). Colony on the substrate, subicular hyphae, conidia, detail of conidia (from top to bottom). Bar A–B = 50 μm, C = 200 μm, D–L = 10 μm.
Fig. 12.Hermatomyces verrucosus (PMA 116084 – holotype) A. Colonies on the natural substrate. B. Subicular hyphae. C. Basal hyphae with young conidium. D–G. Mature conidia. Bar A = 500 μm, B–E = 10 μm, F = 20 μm, G = 10 μm.
| 1 | Only lenticular conidia present | .......................................................................................................................................2 |
| Both lenticular and cylindrical conidia present | .......................................................................................................................................5 | |
| 2 (1) | Lenticular conidia with transverse, longitudinal and oblique septa, verrucose when young | ....................................................................................................................................... |
| Lenticular conidia without longitudinal and oblique septa, ellipsoidal or oblong in side view with two distinct adpressed halves | .......................................................................................................................................3 | |
| 3 (2) | Conidial ornamentation distinctly verrucose | ....................................................................................................................................... |
| Conidial ornamentation smooth or verruculose . | .......................................................................................................................................4 | |
| 4 (3) | Conidia (15–)19–25 μm thick, L/T = 1.26 | ....................................................................................................................................... |
| Conidia 16–23.5(–28) μm thick, L/T = 1.22 | ....................................................................................................................................... | |
| 5 (1) | Cylindrical conidia two-celled or consisting of cells arranged in one column | .......................................................................................................................................6 |
| Cylindrical conidia multi-celled with cells usually not arranged in one column | .......................................................................................................................................7 | |
| 6 (5) | Cylindrical conidia two-celled, constricted at the septa | ....................................................................................................................................... |
| Cylindrical conidia with cells arranged in one column, apical cell verrucose | ....................................................................................................................................... | |
| 7 (5) | Cylindrical conidia with cells arranged in 1-2 columns | .......................................................................................................................................8 |
| Cylindrical conidia with cells arranged in 4 columns | .......................................................................................................................................14 | |
| 8 (7) | Cylindrical conidia with apical cells verrucose, subhyaline or pale brown | ....................................................................................................................................... |
| Cylindrical conidia with apical cells smooth | .......................................................................................................................................9 | |
| 9 (8) | Cylindrical conidia composed of 7 cells or less | .......................................................................................................................................10 |
| Cylindrical conidia composed of more than 7 cells | .......................................................................................................................................15 | |
| 10 (9) | Lenticular conidia with peripheral cells constricted at the septa | .......................................................................................................................................11 |
| Lenticular conidia with peripheral cells not constricted at the septa | .......................................................................................................................................12 | |
| 11 (10) | Lenticular conidia > 30 μm in length, cylindrical conidia without swollen lower cells | ....................................................................................................................................... |
| Lenticular conidia 24.5–32.5 μm in length, cylindrical conidia with swollen lower cells | ....................................................................................................................................... | |
| 12 (10) | Cylindrical conidia 9–12 μm wide at the broadest part | ....................................................................................................................................... |
| Cylindrical conidia wider | .......................................................................................................................................13 | |
| 13 (12) | Cylindrical conidia 22.5–35.5 μm in length | ....................................................................................................................................... |
| Cylindrical conidia 15.5–27 μm in length | ....................................................................................................................................... | |
| 14 (7) | Cylindrical conidia 30–38 × 20–26 μm, with bulbous, gray-brown apex | ....................................................................................................................................... |
| Cylindrical conidia 15–40 × 10–15 μm, with pigmentation in vertical strands between two opposite columns | ....................................................................................................................................... | |
| 15 (9) | Cylindrical conidia with apical cells laterally or apically pigmented brown to blackish brown | ....................................................................................................................................... |
| Cylindrical conidia with dark brown pigmentation running from the top downwards and narrowing to a point close to the basal cell(s) | ....................................................................................................................................... |