Literature DB >> 30010862

Novel sequencing technologies to support industrial biotechnology.

Adalberto Costessi1, Bartholomeus van den Bogert2, Ali May3, Emiel Ver Loren van Themaat4, Johannes A Roubos4, Marc A B Kolkman5, Derek Butler2, Walter Pirovano3.   

Abstract

Industrial biotechnology develops and applies microorganisms for the production of bioproducts and enzymes with applications ranging from food and feed ingredients and processing to bio-based chemicals, biofuels and pharmaceutical products. Next generation DNA sequencing technologies play an increasingly important role in improving and accelerating microbial strain development for existing and novel bio-products via screening, gene and pathway discovery, metabolic engineering and additional optimization and understanding of large-scale manufacturing. In this mini-review, we describe novel DNA sequencing and analysis technologies with a focus on applications to industrial strain development, enzyme discovery and microbial community analysis.

Mesh:

Year:  2018        PMID: 30010862     DOI: 10.1093/femsle/fny103

Source DB:  PubMed          Journal:  FEMS Microbiol Lett        ISSN: 0378-1097            Impact factor:   2.742


  6 in total

1.  Metagenome-assembled genome of a Chitinophaga sp. and its potential in plant biomass degradation, as well of affiliated Pandoraea and Labrys species.

Authors:  Michelli Inácio Gonçalves Funnicelli; Daniel Guariz Pinheiro; Elisângela Soares Gomes-Pepe; Lucas Amoroso Lopes de Carvalho; João Carlos Campanharo; Camila Cesário Fernandes; Luciano Takeshi Kishi; Lúcia Maria Carareto Alves; Eliana Gertrudes de Macedo Lemos
Journal:  World J Microbiol Biotechnol       Date:  2021-08-27       Impact factor: 3.312

2.  Genomic analysis uncovers laccase-coding genes and biosynthetic gene clusters encoding antimicrobial compounds in laccase-producing Acinetobacter baumannii.

Authors:  Renuka Pooalai; Supat Khongfak; Udomluk Leungtongkam; Rapee Thummeepak; Duangkamol Kunthalert; Sutthirat Sitthisak
Journal:  Sci Rep       Date:  2022-07-13       Impact factor: 4.996

Review 3.  Decoding the ocean's microbiological secrets for marine enzyme biodiscovery.

Authors:  Manuel Ferrer; Celia Méndez-García; Rafael Bargiela; Jennifer Chow; Sandra Alonso; Antonio García-Moyano; Gro E K Bjerga; Ida H Steen; Tatjana Schwabe; Charlotte Blom; Jan Vester; Andrea Weckbecker; Patrick Shahgaldian; Carla C C R de Carvalho; Rolandas Meskys; Giulio Zanaroli; Frank O Glöckner; Antonio Fernández-Guerra; Siva Thambisetty; Fernando de la Calle; Olga V Golyshina; Michail M Yakimov; Karl-Erich Jaeger; Alexander F Yakunin; Wolfgang R Streit; Oonagh McMeel; Jan-Bart Calewaert; Nathalie Tonné; Peter N Golyshin
Journal:  FEMS Microbiol Lett       Date:  2019-01-01       Impact factor: 2.742

4.  On the Role of Bioinformatics and Data Science in Industrial Microbiome Applications.

Authors:  Bartholomeus van den Bogert; Jos Boekhorst; Walter Pirovano; Ali May
Journal:  Front Genet       Date:  2019-08-09       Impact factor: 4.599

5.  Metagenomics: An Approach for Unraveling the Community Structure and Functional Potential of Activated Sludge of a Common Effluent Treatment Plant.

Authors:  Gunjan Vasudeva; Harpreet Singh; Sakshi Paliwal; Anil Kumar Pinnaka
Journal:  Front Microbiol       Date:  2022-07-18       Impact factor: 6.064

6.  Changes in the Substrate Source Reveal Novel Interactions in the Sediment-Derived Methanogenic Microbial Community.

Authors:  Anna Szafranek-Nakonieczna; Anna Pytlak; Jarosław Grządziel; Adam Kubaczyński; Artur Banach; Andrzej Górski; Weronika Goraj; Agnieszka Kuźniar; Anna Gałązka; Zofia Stępniewska
Journal:  Int J Mol Sci       Date:  2019-09-08       Impact factor: 5.923

  6 in total

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