| Literature DB >> 30004436 |
Fangfang Qu1,2, Lei Lin3,4, Yong He5,6, Pengcheng Nie7,8,9, Chengyong Cai10,11, Tao Dong12,13, Yi Pan14, Yu Tang15, Shaoming Luo16.
Abstract
This work provides the experimental and theoretical fundamentals for detecting the molecular fingerprints of six kinds of pesticides by using terahertz (THz) time-domain spectroscopy (THz-TDS). The spectra of absorption coefficient and refractive index of the pesticides, chlorpyrifos, fipronil, carbofuran, dimethoate, methomyl, and thidiazuron are obtained in frequencies of 0.1⁻3.5 THz. To accurately describe the THz spectral characteristics of pesticides, the wavelet threshold de-noising (WTD) method with db 5 wavelet fucntion, 5-layer decomposition, and soft-threshold de-noising was used to eliminate the spectral noise. The spectral baseline correction (SBC) method based on asymmetric least squares smoothing was used to remove the baseline drift. Spectral results show that chlorpyrifo had three characteristic absorption peaks at 1.47, 1.93, and 2.73 THz. Fipronil showed three peaks at 0.76, 1.23, and 2.31 THz. Carbofuran showed two peaks at 2.72 and 3.06 THz. Dimethoate showed three peaks at 1.05, 1.89, and 2.92 THz. Methomyl showed five peaks at 1.01, 1.65, 1.91, 2.72, and 3.20 THz. Thidiazuron showed four peaks at 0.99, 1.57, 2.17, and 2.66 THz. The density functional theory (DFT) of B3LYP/6-31G+(d,p) was applied to simulate the molecular dynamics for peak analyzing of the pesticides based on isolated molecules. The theoretical spectra are in good agreement with the experimental spectra processed by WTD + SBC, which implies the validity of WTD + SBC spectral processing methods and the accuracy of DFT spectral peak analysis. These results support that the combination of THz-TDS and DFT is an effective tool for pesticide fingerprint analysis and the molecular dynamics simulations.Entities:
Keywords: density functional theory; molecular dynamics simulations; pesticides; spectral baseline correction; terahertz time-domain spectroscopy; wavelet threshold de-noising
Mesh:
Substances:
Year: 2018 PMID: 30004436 PMCID: PMC6100053 DOI: 10.3390/molecules23071607
Source DB: PubMed Journal: Molecules ISSN: 1420-3049 Impact factor: 4.411
Figure 1Terahertz (THz) spectra of the references and pesticide samples. (A) Time-domain waveforms and (B) Frequency-domain spectra.
Figure 2The absorption and refraction spectra of six pesticide samples. (A) chlorpyrifos, (B) fipronil, (C) carbofuran, (D) dimethoate, (E) methomyl, and (F) thidiazuron.
Wavelet threshold de-noising (WTD) thresholds and evaluations of spectral de-noising.
| Pesticides | Thresholds | Evaluations | |||||
|---|---|---|---|---|---|---|---|
| Level-1 | Level-2 | Level-3 | Level-4 | Level-5 | PSNR | RMSE | |
| Chlorpyrifos | 0.037 | 0.120 | 0.150 | 0.197 | 0.052 | 39.330 | 0.026 |
| Fipronil | 0.018 | 0.099 | 0.118 | 0.260 | 0.227 | 36.865 | 0.036 |
| Carbofuran | 0.048 | 0.432 | 0.692 | 0.472 | 1.548 | 35.821 | 0.107 |
| Dimethoate | 0.714 | 1.064 | 0.893 | 1.225 | 1.441 | 32.502 | 0.173 |
| Methomyl | 0.428 | 0.877 | 0.986 | 1.622 | 0.074 | 33.088 | 0.159 |
| Thidiazuron | 1.172 | 0.784 | 0.781 | 0.568 | 0.054 | 32.553 | 0.124 |
Figure 3The original, de-noised, and baseline corrected spectra of the six pesticide samples. (A) chlorpyrifos; (B) fipronil; (C) carbofuran; (D) dimethoate; (E) methomyl, and (F) thidiazuron.
Figure 4The molecular geometric configuration of the pesticide isolated molecule. (A) chlorpyrifos, (B) fipronil; (C) carbofuran; (D) dimethoate; (E) methomyl, and (F) thidiazuron.
Figure 5Comparison of the experimental and theoretical spectra of the pesticides (A) chlorpyrifos; (B) fipronil; (C) carbofuran; (D) dimethoate; (E) methomyl, and (F) thidiazuron.
Assignment of the absorption peaks.
| DFT Simulation (THz) | THz Experiment (THz) | Shift (THz) | Vibration Modes |
|---|---|---|---|
| Chlorpyrifos | |||
| 1.47 | 1.47 | 0 | δ(C-C)oop |
| 1.90 | 1.93 | −0.03 | υ(P=O)ip + δ(C-C)oop |
| 2.74 | 2.73 | 0.01 | υ(P=O)ip |
| Fipronil | |||
| 0.82 | 0.76 | 0.06 | δ(C-N)ip |
| 1.18 | 1.23 | −0.05 | δ(C-N)ip |
| 1.36 | - | - | δ(C-N)ip + δ(C-S)oop |
| 1.67 | - | - | δ(C-N)ip + δ(C-S)oop |
| 2.31 | 2.31 | 0 | δ(C-N)ip |
| Carbofuran | |||
| 1.15 | - | - | δ(C-N)ip |
| 2.20 | - | - | δ(C-N)ip + υbreathe |
| 2.72 | 2.72 | 0 | δ(C-O)ip |
| 3.06 | 3.06 | 0 | δ(C-O)ip |
| Dimethoate | |||
| 0.72 | - | - | δ(C-C)ip |
| 1.03 | 1.05 | −0.02 | δ(C-C)ip |
| 1.93 | 1.89 | 0.04 | δ(C-N)ip + δ(C-O)oop |
| 2.64 | - | - | δ(C-S)ip + δ(C-O)oop |
| 2.90 | 2.92 | −0.02 | δ(C-S)ip + δ(C-O)oop |
| Methomyl | |||
| 1.01 | 1.01 | 0 | δ(C-N)ip |
| 1.59 | 1.65 | −0.06 | δ(C-N)ip |
| 2.01 | 1.91 | 0.10 | δ(C-N)ip + δ(C-S)oop |
| 2.68 | 2.72 | −0.04 | δ(C-H)ip |
| 3.09 | 3.20 | −0.11 | δ(C-O)ip |
| Thidiazuron | |||
| 0.98 | 0.99 | −0.01 | υbreathe |
| 1.58 | 1.57 | 0.01 | δ(C-N)ip |
| 2.21 | 2.17 | 0.04 | δ(C-O)oop |
| 2.63 | 2.66 | -0.03 | δ(N-C-N)oop |
υ: stretching vibration, δ: bending vibration, oop: out-plane bending, ip: in-plane bending.
Physicochemical properties of the pesticides.
| Pesticides | CAS Number | Molecular Formula | Molecular Mass | Molecular Structure |
|---|---|---|---|---|
| Chlorpyrifos | 2921-88-2 | C9H11Cl3NO3PS | 350.59 |
|
| Fipronil | 120068-37-3 | C12H4Cl2F6N4OS | 437.2 |
|
| Carbofuran | 1563-66-2 | C12H15NO3 | 221.25 |
|
| Dimethoate | 60-51-5 | C5H12NO3PS2 | 229.12 |
|
| Methomyl | 16752-77-5 | C5H10N2O2S | 162.23 |
|
| Thidiazuron | 51707-55-2 | C9H8N4OS | 220.2 |
|