| Literature DB >> 30003074 |
Yunkui Li1,2, Mario Prejanò2, Marirosa Toscano2, Nino Russo2.
Abstract
Making use of anthocyanin copigmentation, it is possible to effectively improve color quality and stability of red wines and other foods. This can be done by selecting strong copigments, but a 1-fold experimental screening usually entails a high cost and a low efficiency. The aim of this work is to show how a theoretical model based on density functional theory can be useful for an accurate and rapid prediction of copigmentation ability of a copigment. The present study, concerning the copigmentation between oenin and quercetin under the framework of implicit solvent, indicates that, in these conditions, the intermolecular hydrogen bonds play an important role in the system stabilization. The dispersion interaction slightly affects the structure, energies and UV-Vis spectral properties of the copigmentation complex.Entities:
Keywords: anthocyanin; copigment; copigmentation; density functional theory; hydrogen bonding; oenin; quercetin; red wine
Year: 2018 PMID: 30003074 PMCID: PMC6031711 DOI: 10.3389/fchem.2018.00245
Source DB: PubMed Journal: Front Chem ISSN: 2296-2646 Impact factor: 5.221
Scheme 1Chemical structures of (A) oenin and (B) quercetin, of which the backbone atoms and rings are numbered.
Main parameters for HB and ring-stacking (RS) and relative Gibbs free energies ΔGrelative for the examined conformers.
| 1 | 1.851 | 169.4 | AC⋯AC | 3.3 | 4.6 | 4.67 | |
| 1 | 1.858 | 165.3 | AC⋯B, B⋯AC | 3.6, 3.3 | 18.7, 1.5 | 3.96 | |
| 2 | 1.730 | 164.5 | AC⋯AC | 3.3 | 3.0 | 4.92 | |
| 1 | 1.745 | 172.3 | AC⋯A, B⋯B | 3.3, 3.4 | 1.0, 6.6 | 3.65 | |
| 4 | 1.725 | 177.6 | AC⋯AC | 3.1~4.1 | 15.3 | 0.00 | |
| 2 | 1.731 | 164.5 | AC⋯AC | 3.3 | 3.0 | 4.94 | |
| 2 | 1.730 | 164.7 | AC⋯AC | 3.3 | 1.6 | 2.75 | |
| 3 | 1.902 | 170.8 | AC⋯B, B⋯AC | 3.4~4.0, 3.3 | 12.1, 7.0 | 4.95 | |
| 1 | 1.745 | 172.3 | AC⋯A, B⋯B | 3.3, 3.4 | 0.5, 6.6 | 3.48 | |
| 3 | 1.835 | 139.7 | AC⋯AC, B⋯B | 3.3, 3.2~4.1 | 0.5, 22.8 | 7.03 | |
| 2 | 1.852 | 153.3 | A⋯B | 3.0~4.1 | 27.9 | 8.55 | |
| 3 | 1.845 | 138.5 | AC⋯AC, B⋯B | 3.3, 3.2~4.1 | 0.6, 22.9 | 6.88 | |
Distance in Å, angle in degree and energy in kcal/mol.
Parameters are shown only for the strongest hydrogen bond, while others are shown in Figure .
Distance between H and hydrogen acceptor, or between two rings.
Angle of a hydrogen bond, or dihedral of two rings.
A, B and AC denote the A-ring, B-ring and AC-rings, respectively.
The energy of conformer .
Figure 1Front (A), side (B), and top (C) views of the optimal conformer 5 with a tube molecular representation. Carbon atoms are colored in green for oenin and in cyan for quercetin. Oxygen and hydrogen (involved in hydrogen bonds) atoms are depicted in red and blue, respectively. HBs, presented in blue dashed lines and numbered, are exhibited with key parameters. Parameters for III are 2.439 Å and 113.6°, while for IV, the C-H…π, parameters are 2.590 Å and 149.5°. The stacking distance and dihedral between AC-rings of oenin and AC-rings of quercetin are also annotated. A fogging depth-cueing is used to improve perception.
Figure 2Visualization of non-covalent interactions (Green = weack interactions, Red = repulsive interactions, Blue-red = attractive interactions) in complex 5.
Inter-ring torsion angle between AC-rings and B-ring (in degree).
| 16.3 | 15.7 | 0.6 | 8.0 | 24.1 | 16.1 | 16.7 | |
| 16.3 | 6.2 | 10.1 | 8.0 | 25.0 | 17.0 | 27.1 | |
| 16.3 | 4.3 | 12.0 | 8.0 | 13.0 | 5.0 | 17.0 | |
| 16.3 | 5.8 | 10.5 | 8.0 | 4.0 | 4.0 | 14.5 | |
| 16.3 | 11.4 | 4.9 | 8.0 | 28.5 | 20.5 | 25.4 | |
| 16.3 | 4.2 | 12.1 | 8.0 | 13.0 | 5.0 | 17.1 | |
| 16.3 | 2.8 | 13.5 | 8.0 | 14.5 | 6.5 | 20.0 | |
| 16.3 | 5.6 | 10.7 | 8.0 | 23.3 | 15.3 | 26.0 | |
| 16.3 | 6.1 | 10.2 | 8.0 | 4.0 | 4.0 | 14.2 | |
| 16.3 | 13.5 | 2.8 | 8.0 | 36.3 | 28.3 | 31.1 | |
| 16.3 | 14.9 | 1.4 | 8.0 | 42.6 | 34.6 | 36.0 | |
| 16.3 | 12.8 | 3.5 | 8.0 | 35.4 | 27.4 | 30.9 | |
| Mean±S.D. | 7.7 ± 4.7 | 15.3 ± 10.7 | 23.0 ± 7.4 | ||||
The angle torsion is defined as the angle difference between the complexed state and individual state.
Binding energies of conformer 5 with different functionals and basis sets (in kcal/mol).
| B3LYP-D3(BJ) | −24.81 | −25.26 | −26.20 | −25.35 |
| B3LYP-D3 | −24.51 | −24.95 | −25.89 | −25.04 |
| ωB97X-D | −24.97 | −25.32 | −26.00 | −24.64 |
| CAM-B3LYP-D3 | −23.88 | −24.19 | −24.89 | −24.04 |
| M06-2X-D3 | −23.96 | −24.41 | −24.95 |
Geometry is based on B3LYP-D3/6-31+G(d). Thermal corrections were computed at B3LYP-D3/6-31+G(d) level, while the total electronic energies were calculated with corresponding functionals and basis sets.
Counterpoise BSSEs were estimated by corresponding functionals combined with 6-311++G(d,p).
Counterpoise BSSEs were estimated by CAM-B3LYP-D3/aug-cc-pVDZ.
Counterpoise BSSEs were estimated by CAM-B3LYP-D3/aug-cc-pVTZ.
Binding energies ΔEbinding, distortion energies ΔEdist, interaction energies ΔEinter, and Boltzmann weights BW (in kcal/mol).
| −16.23 | 1.30 | −17.52 | 0.04 | |
| −17.97 | 0.41 | −18.38 | 0.12 | |
| −18.33 | 3.67 | −22.00 | 0.02 | |
| −19.53 | 1.13 | −20.66 | 0.21 | |
| −24.89 | 1.34 | −26.23 | 98.34 | |
| −18.32 | 3.66 | −21.42 | 0.02 | |
| −21.37 | 1.39 | −21.98 | 0.94 | |
| −18.64 | 5.11 | −21.25 | 0.02 | |
| −19.55 | 1.13 | −22.75 | 0.27 | |
| −15.98 | 5.44 | −23.75 | ||
| −14.67 | 6.58 | −21.95 | ||
| −16.02 | 5.93 | −20.68 |
Geometry is based on B3LYP-D3/6-31+G(d). Thermal corrections were computed at B3LYP-D3/6-31+G(d) level, while the total electronic energies and counterpoise BSSEs were calculated with CAM-B3LYP-D3/aug-cc-pVTZ.
Dispersion contribution to binding ΔEdisp,binding and interaction ΔEdist,inter energies, intermolecular CT of ground qGS and excited qES states for the 12 conformers (energies in kcal/mol, charge in |e|) .
| −20.82 | −21.56 | −0.07 | 0.71 | |
| −20.90 | −21.37 | −0.04 | 0.75 | |
| −22.86 | −23.03 | −0.02 | 0.70 | |
| −21.92 | −22.18 | −0.06 | −0.03 | |
| −21.76 | −21.93 | −0.06 | −0.06 | |
| −22.87 | −23.04 | −0.02 | 0.70 | |
| −23.30 | −23.57 | 0.00 | 0.69 | |
| −22.78 | −23.28 | 0.08 | 0.72 | |
| −21.90 | −22.15 | −0.06 | −0.03 | |
| −21.80 | −23.01 | −0.02 | 0.11 | |
| −21.45 | −20.89 | 0.08 | 0.07 | |
| −21.73 | −22.93 | −0.01 | 0.13 | |
| mean±S.D. | −22.01 ± 0.79 | −22.41 ± 0.85 | −0.02 ± 0.05 | 0.37 ± 0.36 |
Geometry is based on B3LYP-D3/6-31+G(d). Dispersion energies and q.
“−” means the electron is transferred from quercetin to oenin, vice versa.
Pearson correlation analysis between energies and CT.
| Δ | 1 | 0.605 | 0.623 | 0.944 | 0.348 | 0.199 | 0.358 |
| Δ | 1 | −0.246 | 0.808 | −0.157 | −0.201 | 0.740 | |
| Δ | 1 | 0.356 | 0.577 | 0.440 | −0.290 | ||
| 1 | 0.151 | 0.071 | 0.560 | ||||
| Δ | 1 | 0.830 | −0.327 | ||||
| Δ | 1 | −0.138 | |||||
| 1 |
Superscripts of significance (two-tailed)
stand for highly significant (p < 0.01) and significant (p < 0.05), respectively.
Impact of functionals on spectral shift of conformer 5 (λmax in nm).
| B3LYP-D3 | 492.4 | 493.2 | 0.8 | 8.5 |
| CAM-B3LYP-D3 | 430.1 | 439.0 | 8.8 | |
| M062X-D3 | 429.9 | 439.2 | 9.4 | |
| ωB97X-D | 424.2 | 431.4 | 7.2 | |
| B3PW91-D3 | 493.5 | 492.5 | −1.0 | |
| PBE0-D3 | 471.8 | 476.0 | 4.2 | |
Geometry is based on B3LYP-D3/6-31+G(d). Spectra were calculated with SS-PCM, TD-DFT-D3/cc-pVDZ.
Lambert et al. (.
Vertical excitation energies Emax, maximum absorption wavelengths λmax, spectral shifts Δλmax, oscillator strengths f and MO descriptions (%) of 12 conformers (energy in eV, wavelength in nm).
| 2.86 | 433.4 | 9.2 | 0.4545 | HOMO-1 → LUMO (78.2) | |
| 2.88 | 430.3 | 6.1 | 0.4364 | HOMO-1 → LUMO (84.6) | |
| 2.87 | 431.7 | 7.5 | 0.4602 | HOMO-1 → LUMO (82.3) | |
| 2.83 | 437.7 | 13.5 | 0.3807 | HOMO-1 → LUMO (79.3) | |
| 2.87 | 431.4 | 7.2 | 0.4157 | HOMO-1 → LUMO (81.7) | |
| 2.87 | 431.7 | 7.5 | 0.4601 | HOMO-1 → LUMO (82.3) | |
| 2.90 | 428.0 | 3.8 | 0.4461 | HOMO-1 → LUMO (80.1) | |
| 2.93 | 423.4 | −0.7 | 0.3826 | HOMO-1 → LUMO (81.1) | |
| 2.83 | 437.6 | 13.5 | 0.3806 | HOMO-1 → LUMO (79.3) | |
| 2.83 | 438.3 | 14.1 | 0.2960 | HOMO-1 → LUMO (74.3) | |
| 2.98 | 415.5 | −8.7 | 0.4210 | HOMO-1 → LUMO (79.2) | |
| 2.83 | 438.7 | 14.5 | 0.2798 | HOMO-1 → LUMO (71.5) |
Geometry is based on B3LYP-D3/6-31+G(d). The spectra were calculated with SS-PCM, TD-ωB97X-D/cc-pVDZ.
Compared to λ.
Figure 3Molecular orbital correlation diagram of oenin, conformer 5 and quercetin. A tube molecular representation was adopted for oenin in red and quercetin in cyan.