| Literature DB >> 30002878 |
U Mohamooda Sumaya1, E Sankar2, K Arasambattu MohanaKrishnan2, K Biruntha1, G Usha3.
Abstract
In the title compound, C20H13NO2S2, the carbazole ring system forms a dihedral angle of 89.08 (1)° with the sulfonyl-substituted phenyl ring. Intra-molecular C-H⋯O hydrogen bonds involving the sulfone O atoms and the carbazole moiety result in two S(6) rings. In the crystal, mol-ecules are linked via pairs of C-H⋯O hydrogen bonds forming inversion dimers with an R22(12) graph-set motif. Analysis of the Hirshfeld surfaces and two-dimensional fingerprint plots was used to explore the distribution of weak inter-molecular inter-actions in the crystal structure.Entities:
Keywords: Hirshfeld surface analysis; carbazole; crystal structure; energy frameworks; two-dimensional fingerprint plot
Year: 2018 PMID: 30002878 PMCID: PMC6038642 DOI: 10.1107/S2056989018007971
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level. Dashed lines indicate the intramolecular C—H⋯O hydrogen bonds, which generate S(6) ring motifs.
Figure 2The crystal packing of the title compound, viewed along the a axis. Dashed lines indicate intermolecular hydrogen bonds. For clarity, only the H atoms involved in these interactions have been included.
Hydrogen-bond geometry (Å, °)
Cg5 is the centroid of the C15–C20 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C1—H1⋯O2 | 0.93 | 2.34 | 2.935 (3) | 121 |
| C1—H1⋯O2i | 0.93 | 2.62 | 3.443 (3) | 148 |
| C9—H9⋯O1 | 0.93 | 2.35 | 2.949 (3) | 122 |
| C9—H9⋯O1ii | 0.93 | 2.57 | 3.382 (2) | 146 |
| C13—H13⋯ | 0.93 | 2.82 | 3.604 (2) | 143 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 3Hirshfeld surfaces for visualizing the intermolecular contacts of the title compound: (a) d norm highlighting the regions of C—H⋯O hydrogen bonds, (b) electrostatic potential, (c) shape index, (d) curvedness and (e) fragment patches.
Figure 4Two-dimensional fingerprint plots for the title compound showing the contributions of different types of interactions: (a) all intermolecular contacts, (b) H⋯H contacts, (c) C⋯H/H⋯C contacts, (d) O⋯H/H⋯O contacts, (e) H⋯S/S⋯H contacts and (f) C⋯C contacts. The outline of the the full fingerprint is shown in gray. Surfaces to the right highlight the relevant surface patches associated with the specific contact type and are coloured as d norm.
Figure 5(a) Interactions between the selected reference molecule (highlighted in yellow) and the molecules present in a 3.8 Å cluster around it, (b) Coulomb energy framework, (c) dispersion energy framework and (d) total energy framework.
Scale factors for benchmarked energy model
| Energy model |
|
|
|
|
|---|---|---|---|---|
| CE-B3LYP⋯B3LYP/6–31G(d,p) electron densities | 1.057 | 0.740 | 0.871 | 0.618 |
Interaction energies (kJ mol−1) between a reference molecule and its neighbours
N is the number of equivalent neighbours, R is the distance between molecular centroids (mean atomic position) in Å. The colours identify molecules in Fig. 5 ▸ a, with the reference molecule shown in grey.
| Colour |
| symmetry |
|
|
|
|
|
|
|---|---|---|---|---|---|---|---|---|
| Red | 1 | inversion | 9.29 | −3.7 | −1.5 | −27.5 | 14.6 | −20.0 |
| Orange | 1 | inversion | 8.65 | 0.9 | −1.4 | −23.3 | 10.3 | −14.0 |
| Yellow | 1 | inversion | 6.18 | −12.2 | −2.6 | −83.1 | 54.3 | −53.7 |
| Green | 2 | translation | 12.53 | 1.7 | −0.5 | −7.3 | 2.4 | −3.4 |
| Lime | 2 | translation | 9.88 | −2.4 | −0.6 | −19.5 | 14.0 | −11.3 |
| Aqua | 2 | translation | 7.65 | −4.5 | −2.1 | −12.1 | 5.4 | −13.5 |
| Cyan | 1 | inversion | 7.79 | −17.5 | −4.8 | −23.5 | 16.7 | −32.2 |
| Blue | 1 | inversion | 8.76 | −19.3 | −5.0 | −26.9 | 22.3 | −33.8 |
| Indigo | 1 | inversion | 5.84 | −11.7 | −2.7 | −87.7 | 51.5 | −58.9 |
| Purple | 2 | translation | 11.22 | 1.9 | −0.4 | −6.9 | 3.6 | −2.0 |
| Pink | 1 | inversion | 10.79 | −2.6 | −0.4 | −8.1 | 2.1 | −8.8 |
Figure 6Reaction scheme.
Experimental details
| Crystal data | |
| Chemical formula | C20H13NO2S2 |
|
| 363.43 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 298 |
|
| 7.6461 (8), 9.8772 (9), 11.2191 (12) |
| α, β, γ (°) | 72.571 (5), 88.496 (6), 86.144 (6) |
|
| 806.54 (14) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.34 |
| Crystal size (mm) | 0.25 × 0.20 × 0.20 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.921, 0.934 |
| No. of measured, independent and observed [ | 16616, 3174, 2458 |
|
| 0.036 |
| (sin θ/λ)max (Å−1) | 0.617 |
| Refinement | |
|
| 0.034, 0.091, 1.03 |
| No. of reflections | 3102 |
| No. of parameters | 226 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.24, −0.41 |
Computer programs: APEX2, SAINT and XPREP (Bruker, 2012 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸) and ORTEP-3 for Windows (Farrugia, 2012 ▸).
| C20H13NO2S2 | |
| Triclinic, | |
| Mo | |
| Cell parameters from 3175 reflections | |
| θ = 2.4–28.8° | |
| α = 72.571 (5)° | µ = 0.34 mm−1 |
| β = 88.496 (6)° | |
| γ = 86.144 (6)° | Needle, colourless |
| 0.25 × 0.20 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 2458 reflections with |
| Radiation source: fine-focus sealed tube | |
| ω and φ scan | θmax = 26.0°, θmin = 2.4° |
| Absorption correction: multi-scan (SADABS; Bruker, 2012) | |
| 16616 measured reflections | |
| 3174 independent reflections |
| Refinement on | 0 restraints |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3102 reflections | Δρmax = 0.24 e Å−3 |
| 226 parameters | Δρmin = −0.41 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.3947 (3) | 0.2820 (2) | 0.4004 (2) | 0.0462 (5) | |
| H1 | 0.4480 | 0.1960 | 0.4478 | 0.055* | |
| C2 | 0.3350 (4) | 0.3854 (3) | 0.4540 (2) | 0.0590 (7) | |
| H2 | 0.3496 | 0.3685 | 0.5394 | 0.071* | |
| C3 | 0.2541 (4) | 0.5137 (3) | 0.3848 (2) | 0.0614 (7) | |
| H3 | 0.2148 | 0.5806 | 0.4242 | 0.074* | |
| C4 | 0.2317 (3) | 0.5426 (2) | 0.2583 (2) | 0.0478 (6) | |
| H4 | 0.1776 | 0.6287 | 0.2118 | 0.057* | |
| C5 | 0.2909 (3) | 0.44110 (19) | 0.20083 (18) | 0.0327 (4) | |
| C6 | 0.3716 (3) | 0.31203 (19) | 0.27287 (18) | 0.0331 (4) | |
| C7 | 0.3683 (2) | 0.30993 (19) | 0.06791 (17) | 0.0313 (4) | |
| C8 | 0.2892 (2) | 0.43910 (19) | 0.07345 (17) | 0.0300 (4) | |
| C9 | 0.3877 (3) | 0.2747 (2) | −0.04358 (19) | 0.0395 (5) | |
| H9 | 0.4417 | 0.1880 | −0.0450 | 0.047* | |
| C10 | 0.3247 (3) | 0.3722 (2) | −0.1510 (2) | 0.0432 (5) | |
| H10 | 0.3350 | 0.3499 | −0.2259 | 0.052* | |
| C11 | 0.2454 (3) | 0.5042 (2) | −0.15089 (19) | 0.0378 (5) | |
| C12 | 0.2289 (2) | 0.53705 (19) | −0.03801 (19) | 0.0335 (4) | |
| C13 | 0.1126 (3) | 0.7312 (2) | −0.2176 (2) | 0.0526 (6) | |
| H13 | 0.0633 | 0.8143 | −0.2728 | 0.063* | |
| C14 | 0.1762 (3) | 0.6197 (2) | −0.2532 (2) | 0.0499 (6) | |
| H14 | 0.1756 | 0.6172 | −0.3354 | 0.060* | |
| C15 | 0.2718 (3) | −0.02095 (18) | 0.26426 (18) | 0.0318 (4) | |
| C16 | 0.2018 (3) | −0.0612 (2) | 0.38416 (19) | 0.0392 (5) | |
| H16 | 0.2624 | −0.0493 | 0.4508 | 0.047* | |
| C17 | 0.0401 (3) | −0.1193 (2) | 0.4027 (2) | 0.0458 (5) | |
| H17 | −0.0082 | −0.1480 | 0.4826 | 0.055* | |
| C18 | −0.0494 (3) | −0.1347 (2) | 0.3035 (2) | 0.0482 (6) | |
| H18 | −0.1589 | −0.1727 | 0.3166 | 0.058* | |
| C19 | 0.0212 (3) | −0.0946 (2) | 0.1843 (2) | 0.0473 (5) | |
| H19 | −0.0408 | −0.1052 | 0.1178 | 0.057* | |
| C20 | 0.1835 (3) | −0.0388 (2) | 0.1641 (2) | 0.0405 (5) | |
| H20 | 0.2332 | −0.0135 | 0.0845 | 0.049* | |
| O1 | 0.55980 (19) | 0.02188 (14) | 0.13545 (14) | 0.0426 (4) | |
| O2 | 0.56255 (19) | 0.02622 (14) | 0.35412 (13) | 0.0423 (4) | |
| S1 | 0.13085 (7) | 0.70590 (5) | −0.05968 (6) | 0.04557 (17) | |
| S2 | 0.47505 (6) | 0.05704 (5) | 0.23770 (5) | 0.03323 (14) | |
| N1 | 0.4252 (2) | 0.23071 (16) | 0.19079 (14) | 0.0332 (4) |
| C1 | 0.0662 (15) | 0.0380 (12) | 0.0332 (12) | −0.0017 (10) | −0.0041 (11) | −0.0091 (9) |
| C2 | 0.094 (2) | 0.0533 (14) | 0.0340 (12) | −0.0060 (13) | 0.0035 (13) | −0.0189 (11) |
| C3 | 0.095 (2) | 0.0454 (14) | 0.0500 (15) | −0.0002 (13) | 0.0092 (14) | −0.0256 (12) |
| C4 | 0.0623 (15) | 0.0344 (11) | 0.0468 (13) | 0.0051 (10) | 0.0037 (11) | −0.0143 (10) |
| C5 | 0.0353 (11) | 0.0284 (9) | 0.0352 (11) | −0.0037 (8) | 0.0016 (8) | −0.0105 (8) |
| C6 | 0.0376 (11) | 0.0299 (10) | 0.0331 (10) | −0.0034 (8) | 0.0006 (8) | −0.0111 (8) |
| C7 | 0.0332 (10) | 0.0278 (9) | 0.0313 (10) | −0.0025 (7) | −0.0018 (8) | −0.0060 (8) |
| C8 | 0.0289 (10) | 0.0267 (9) | 0.0345 (10) | −0.0039 (7) | 0.0000 (8) | −0.0091 (8) |
| C9 | 0.0520 (13) | 0.0321 (10) | 0.0361 (11) | 0.0008 (9) | 0.0007 (10) | −0.0138 (9) |
| C10 | 0.0570 (14) | 0.0434 (12) | 0.0312 (11) | −0.0052 (10) | −0.0007 (10) | −0.0138 (9) |
| C11 | 0.0395 (12) | 0.0363 (11) | 0.0349 (11) | −0.0065 (9) | −0.0049 (9) | −0.0053 (9) |
| C12 | 0.0315 (10) | 0.0274 (9) | 0.0394 (11) | −0.0043 (8) | −0.0022 (8) | −0.0057 (8) |
| C13 | 0.0534 (15) | 0.0415 (13) | 0.0508 (14) | 0.0009 (10) | −0.0151 (11) | 0.0051 (11) |
| C14 | 0.0554 (15) | 0.0509 (14) | 0.0369 (12) | −0.0075 (11) | −0.0106 (11) | −0.0012 (10) |
| C15 | 0.0354 (11) | 0.0243 (9) | 0.0354 (11) | 0.0050 (7) | −0.0050 (8) | −0.0095 (8) |
| C16 | 0.0436 (12) | 0.0368 (11) | 0.0365 (11) | 0.0035 (9) | −0.0044 (9) | −0.0111 (9) |
| C17 | 0.0472 (13) | 0.0432 (12) | 0.0455 (13) | −0.0025 (10) | 0.0070 (11) | −0.0116 (10) |
| C18 | 0.0366 (12) | 0.0391 (12) | 0.0694 (16) | −0.0011 (9) | 0.0007 (11) | −0.0173 (11) |
| C19 | 0.0470 (13) | 0.0443 (12) | 0.0546 (14) | −0.0018 (10) | −0.0144 (11) | −0.0199 (11) |
| C20 | 0.0470 (13) | 0.0366 (11) | 0.0373 (11) | 0.0013 (9) | −0.0045 (10) | −0.0106 (9) |
| O1 | 0.0446 (9) | 0.0362 (8) | 0.0472 (9) | 0.0064 (6) | 0.0048 (7) | −0.0150 (6) |
| O2 | 0.0417 (8) | 0.0387 (8) | 0.0427 (9) | 0.0048 (6) | −0.0145 (7) | −0.0066 (6) |
| S1 | 0.0462 (3) | 0.0317 (3) | 0.0526 (4) | 0.0048 (2) | −0.0053 (3) | −0.0043 (2) |
| S2 | 0.0342 (3) | 0.0271 (2) | 0.0365 (3) | 0.00447 (18) | −0.0042 (2) | −0.0077 (2) |
| N1 | 0.0429 (10) | 0.0271 (8) | 0.0287 (8) | 0.0026 (7) | −0.0039 (7) | −0.0077 (7) |
| C1—C2 | 1.380 (3) | C11—C14 | 1.437 (3) |
| C1—C6 | 1.385 (3) | C12—S1 | 1.7323 (19) |
| C1—H1 | 0.9300 | C13—C14 | 1.338 (3) |
| C2—C3 | 1.386 (4) | C13—S1 | 1.722 (3) |
| C2—H2 | 0.9300 | C13—H13 | 0.9300 |
| C3—C4 | 1.374 (3) | C14—H14 | 0.9300 |
| C3—H3 | 0.9300 | C15—C20 | 1.387 (3) |
| C4—C5 | 1.392 (3) | C15—C16 | 1.387 (3) |
| C4—H4 | 0.9300 | C15—S2 | 1.760 (2) |
| C5—C6 | 1.401 (3) | C16—C17 | 1.382 (3) |
| C5—C8 | 1.435 (3) | C16—H16 | 0.9300 |
| C6—N1 | 1.428 (2) | C17—C18 | 1.374 (3) |
| C7—C8 | 1.392 (3) | C17—H17 | 0.9300 |
| C7—C9 | 1.397 (3) | C18—C19 | 1.382 (3) |
| C7—N1 | 1.429 (2) | C18—H18 | 0.9300 |
| C8—C12 | 1.399 (3) | C19—C20 | 1.378 (3) |
| C9—C10 | 1.373 (3) | C19—H19 | 0.9300 |
| C9—H9 | 0.9300 | C20—H20 | 0.9300 |
| C10—C11 | 1.401 (3) | O1—S2 | 1.4233 (15) |
| C10—H10 | 0.9300 | O2—S2 | 1.4236 (15) |
| C11—C12 | 1.399 (3) | S2—N1 | 1.6572 (16) |
| C2—C1—C6 | 117.0 (2) | C8—C12—S1 | 128.08 (16) |
| C2—C1—H1 | 121.5 | C14—C13—S1 | 113.43 (17) |
| C6—C1—H1 | 121.5 | C14—C13—H13 | 123.3 |
| C1—C2—C3 | 122.1 (2) | S1—C13—H13 | 123.3 |
| C1—C2—H2 | 118.9 | C13—C14—C11 | 112.8 (2) |
| C3—C2—H2 | 118.9 | C13—C14—H14 | 123.6 |
| C4—C3—C2 | 120.5 (2) | C11—C14—H14 | 123.6 |
| C4—C3—H3 | 119.8 | C20—C15—C16 | 121.34 (19) |
| C2—C3—H3 | 119.8 | C20—C15—S2 | 119.11 (16) |
| C3—C4—C5 | 119.1 (2) | C16—C15—S2 | 119.55 (16) |
| C3—C4—H4 | 120.5 | C17—C16—C15 | 118.7 (2) |
| C5—C4—H4 | 120.5 | C17—C16—H16 | 120.6 |
| C4—C5—C6 | 119.44 (19) | C15—C16—H16 | 120.6 |
| C4—C5—C8 | 132.60 (19) | C18—C17—C16 | 120.2 (2) |
| C6—C5—C8 | 107.96 (16) | C18—C17—H17 | 119.9 |
| C1—C6—C5 | 121.89 (18) | C16—C17—H17 | 119.9 |
| C1—C6—N1 | 130.16 (18) | C17—C18—C19 | 120.8 (2) |
| C5—C6—N1 | 107.91 (17) | C17—C18—H18 | 119.6 |
| C8—C7—C9 | 122.62 (18) | C19—C18—H18 | 119.6 |
| C8—C7—N1 | 108.02 (16) | C20—C19—C18 | 120.0 (2) |
| C9—C7—N1 | 129.33 (17) | C20—C19—H19 | 120.0 |
| C7—C8—C12 | 118.03 (17) | C18—C19—H19 | 120.0 |
| C7—C8—C5 | 108.38 (16) | C19—C20—C15 | 119.0 (2) |
| C12—C8—C5 | 133.58 (18) | C19—C20—H20 | 120.5 |
| C10—C9—C7 | 117.95 (19) | C15—C20—H20 | 120.5 |
| C10—C9—H9 | 121.0 | C13—S1—C12 | 91.09 (11) |
| C7—C9—H9 | 121.0 | O1—S2—O2 | 120.14 (9) |
| C9—C10—C11 | 121.76 (19) | O1—S2—N1 | 106.94 (8) |
| C9—C10—H10 | 119.1 | O2—S2—N1 | 106.82 (8) |
| C11—C10—H10 | 119.1 | O1—S2—C15 | 108.46 (9) |
| C12—C11—C10 | 119.05 (18) | O2—S2—C15 | 108.51 (9) |
| C12—C11—C14 | 111.32 (19) | N1—S2—C15 | 104.96 (9) |
| C10—C11—C14 | 129.6 (2) | C6—N1—C7 | 107.66 (15) |
| C11—C12—C8 | 120.57 (18) | C6—N1—S2 | 124.02 (13) |
| C11—C12—S1 | 111.34 (15) | C7—N1—S2 | 124.80 (13) |
| C6—C1—C2—C3 | 0.5 (4) | C12—C11—C14—C13 | 0.1 (3) |
| C1—C2—C3—C4 | −0.5 (4) | C10—C11—C14—C13 | −178.9 (2) |
| C2—C3—C4—C5 | 0.2 (4) | C20—C15—C16—C17 | −0.4 (3) |
| C3—C4—C5—C6 | 0.1 (3) | S2—C15—C16—C17 | 178.53 (15) |
| C3—C4—C5—C8 | −179.2 (2) | C15—C16—C17—C18 | −0.8 (3) |
| C2—C1—C6—C5 | −0.2 (3) | C16—C17—C18—C19 | 0.9 (3) |
| C2—C1—C6—N1 | 176.9 (2) | C17—C18—C19—C20 | 0.2 (3) |
| C4—C5—C6—C1 | −0.1 (3) | C18—C19—C20—C15 | −1.4 (3) |
| C8—C5—C6—C1 | 179.39 (19) | C16—C15—C20—C19 | 1.6 (3) |
| C4—C5—C6—N1 | −177.79 (18) | S2—C15—C20—C19 | −177.40 (15) |
| C8—C5—C6—N1 | 1.7 (2) | C14—C13—S1—C12 | 0.00 (19) |
| C9—C7—C8—C12 | −0.6 (3) | C11—C12—S1—C13 | 0.04 (16) |
| N1—C7—C8—C12 | 177.62 (16) | C8—C12—S1—C13 | 179.58 (19) |
| C9—C7—C8—C5 | −179.87 (18) | C20—C15—S2—O1 | −30.91 (17) |
| N1—C7—C8—C5 | −1.6 (2) | C16—C15—S2—O1 | 150.12 (15) |
| C4—C5—C8—C7 | 179.3 (2) | C20—C15—S2—O2 | −162.97 (15) |
| C6—C5—C8—C7 | 0.0 (2) | C16—C15—S2—O2 | 18.06 (18) |
| C4—C5—C8—C12 | 0.2 (4) | C20—C15—S2—N1 | 83.12 (16) |
| C6—C5—C8—C12 | −179.1 (2) | C16—C15—S2—N1 | −95.86 (16) |
| C8—C7—C9—C10 | −0.4 (3) | C1—C6—N1—C7 | 179.9 (2) |
| N1—C7—C9—C10 | −178.23 (19) | C5—C6—N1—C7 | −2.7 (2) |
| C7—C9—C10—C11 | 0.9 (3) | C1—C6—N1—S2 | 20.2 (3) |
| C9—C10—C11—C12 | −0.5 (3) | C5—C6—N1—S2 | −162.32 (14) |
| C9—C10—C11—C14 | 178.4 (2) | C8—C7—N1—C6 | 2.7 (2) |
| C10—C11—C12—C8 | −0.6 (3) | C9—C7—N1—C6 | −179.27 (19) |
| C14—C11—C12—C8 | −179.65 (18) | C8—C7—N1—S2 | 162.11 (14) |
| C10—C11—C12—S1 | 179.00 (16) | C9—C7—N1—S2 | −19.8 (3) |
| C14—C11—C12—S1 | −0.1 (2) | O1—S2—N1—C6 | −166.71 (15) |
| C7—C8—C12—C11 | 1.1 (3) | O2—S2—N1—C6 | −36.89 (18) |
| C5—C8—C12—C11 | −179.87 (19) | C15—S2—N1—C6 | 78.21 (17) |
| C7—C8—C12—S1 | −178.41 (14) | O1—S2—N1—C7 | 37.08 (18) |
| C5—C8—C12—S1 | 0.6 (3) | O2—S2—N1—C7 | 166.91 (15) |
| S1—C13—C14—C11 | 0.0 (3) | C15—S2—N1—C7 | −78.00 (17) |
| H··· | ||||
| C1—H1···O2 | 0.93 | 2.34 | 2.935 (3) | 121 |
| C1—H1···O2i | 0.93 | 2.62 | 3.443 (3) | 148 |
| C9—H9···O1 | 0.93 | 2.35 | 2.949 (3) | 122 |
| C9—H9···O1ii | 0.93 | 2.57 | 3.382 (2) | 146 |
| C13—H13··· | 0.93 | 2.82 | 3.604 (2) | 143 |