Literature DB >> 30002272

Fluorescence spectroscopy for revealing mechanisms in biology: Strengths and pitfalls.

G Krishnamoorthy1.   

Abstract

This article describes the basic principles of steady-state and time-resolved fluorescence. The formal equivalence of the two methodologies is described first, followed by the extra advantages of time-resolved methods in revealing population heterogeneity in complex systems encountered in biology. Several examples from the author's work are described in support of the above contention. Finally, several misinterpretations and pitfalls in the interpretation of fluorescence data and their remedy are described.

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Year:  2018        PMID: 30002272

Source DB:  PubMed          Journal:  J Biosci        ISSN: 0250-5991            Impact factor:   1.826


  42 in total

1.  Distributions of intramolecular distances in the reduced and denatured states of bovine pancreatic ribonuclease A. Folding initiation structures in the C-terminal portions of the reduced protein.

Authors:  A Navon; V Ittah; P Landsman; H A Scheraga; E Haas
Journal:  Biochemistry       Date:  2001-01-09       Impact factor: 3.162

2.  Characterization of the formation of amyloid protofibrils from barstar by mapping residue-specific fluorescence dynamics.

Authors:  Samrat Mukhopadhyay; Pabitra K Nayak; Jayant B Udgaonkar; G Krishnamoorthy
Journal:  J Mol Biol       Date:  2006-02-20       Impact factor: 5.469

3.  Monitoring membrane protein conformational heterogeneity by fluorescence lifetime distribution analysis using the maximum entropy method.

Authors:  Sourav Haldar; Mamata Kombrabail; G Krishnamoorthy; Amitabha Chattopadhyay
Journal:  J Fluoresc       Date:  2009-10-09       Impact factor: 2.217

4.  Oligomerization of the serotonin(1A) receptor in live cells: a time-resolved fluorescence anisotropy approach.

Authors:  Yamuna Devi Paila; Mamata Kombrabail; G Krishnamoorthy; Amitabha Chattopadhyay
Journal:  J Phys Chem B       Date:  2011-09-13       Impact factor: 2.991

Review 5.  Fluorescence spectroscopy in molecular description of biological processes.

Authors:  G Krishnamoorthy
Journal:  Indian J Biochem Biophys       Date:  2003-06       Impact factor: 1.918

6.  Fully integrated silicon probes for high-density recording of neural activity.

Authors:  James J Jun; Nicholas A Steinmetz; Joshua H Siegle; Daniel J Denman; Marius Bauza; Brian Barbarits; Albert K Lee; Costas A Anastassiou; Alexandru Andrei; Çağatay Aydın; Mladen Barbic; Timothy J Blanche; Vincent Bonin; João Couto; Barundeb Dutta; Sergey L Gratiy; Diego A Gutnisky; Michael Häusser; Bill Karsh; Peter Ledochowitsch; Carolina Mora Lopez; Catalin Mitelut; Silke Musa; Michael Okun; Marius Pachitariu; Jan Putzeys; P Dylan Rich; Cyrille Rossant; Wei-Lung Sun; Karel Svoboda; Matteo Carandini; Kenneth D Harris; Christof Koch; John O'Keefe; Timothy D Harris
Journal:  Nature       Date:  2017-11-08       Impact factor: 49.962

7.  Cell type and spatial location dependence of cytoplasmic viscosity measured by time-resolved fluorescence microscopy.

Authors:  A Srivastava; G Krishnamoorthy
Journal:  Arch Biochem Biophys       Date:  1997-04-15       Impact factor: 4.013

8.  Maximum entropy method of data analysis in time-resolved spectroscopy.

Authors:  J C Brochon
Journal:  Methods Enzymol       Date:  1994       Impact factor: 1.600

9.  SNARF-1 as an intracellular pH indicator in laser microspectrofluorometry: a critical assessment.

Authors:  O Seksek; N Henry-Toulmé; F Sureau; J Bolard
Journal:  Anal Biochem       Date:  1991-02-15       Impact factor: 3.365

10.  p53 amyloid formation leading to its loss of function: implications in cancer pathogenesis.

Authors:  Saikat Ghosh; Shimul Salot; Shinjinee Sengupta; Ambuja Navalkar; Dhiman Ghosh; Reeba Jacob; Subhadeep Das; Rakesh Kumar; Narendra Nath Jha; Shruti Sahay; Surabhi Mehra; Ganesh M Mohite; Santanu K Ghosh; Mamata Kombrabail; Guruswamy Krishnamoorthy; Pradip Chaudhari; Samir K Maji
Journal:  Cell Death Differ       Date:  2017-06-23       Impact factor: 15.828

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  5 in total

Review 1.  Delving into Membrane Heterogeneity Utilizing Fluorescence Lifetime Distribution Analysis.

Authors:  Sourav Haldar
Journal:  J Membr Biol       Date:  2022-04-29       Impact factor: 2.426

Review 2.  Site-Directed Fluorescence Approaches for Dynamic Structural Biology of Membrane Peptides and Proteins.

Authors:  H Raghuraman; Satyaki Chatterjee; Anindita Das
Journal:  Front Mol Biosci       Date:  2019-09-25

3.  Site-directed fluorescence approaches to monitor the structural dynamics of proteins using intrinsic Trp and labeled with extrinsic fluorophores.

Authors:  Rupasree Brahma; Anindita Das; H Raghuraman
Journal:  STAR Protoc       Date:  2022-02-28

4.  Characterization of Two NMN Deamidase Mutants as Possible Probes for an NMN Biosensor.

Authors:  Alessandra Camarca; Gabriele Minazzato; Angela Pennacchio; Alessandro Capo; Adolfo Amici; Sabato D'Auria; Nadia Raffaelli
Journal:  Int J Mol Sci       Date:  2021-06-13       Impact factor: 5.923

5.  Experimental approach to study the effect of mutations on the protein folding pathway.

Authors:  Elena V Nemtseva; Marina A Gerasimova; Tatiana N Melnik; Bogdan S Melnik
Journal:  PLoS One       Date:  2019-01-14       Impact factor: 3.240

  5 in total

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