| Literature DB >> 29997447 |
Alexander Ordynets1, David Scherf1, Felix Pansegrau1, Jonathan Denecke1, Ludmila Lysenko1, Karl-Henrik Larsson2, Ewald Langer1.
Abstract
Diversity of corticioid fungi (resupinate Basidiomycota), especially outside the northern temperate climatic zone, remains poorly explored. Furthermore, most of the known species are delimited by morphological concepts only and, not rarely, these concepts are too broad and need to be tested by molecular tools. For many decades, the delimitation of species in the genus Subulicystidium (Hydnodontaceae, Trechisporales) was a challenge for mycologists. The presence of numerous transitional forms as to basidiospore size and shape hindered species delimitation and almost no data on molecular diversity have been available. In this study, an extensive set of 144 Subulicystidium specimens from Paleo- and Neotropics was examined. Forty-nine sequences of ITS nuclear ribosomal DNA region and 51 sequences of 28S nuclear ribosomal DNA region from fruit bodies of Subulicystidium were obtained and analysed within the barcoding gap framework and with phylogenetic Bayesian and Maximum likelihood approaches. Eleven new species of Subulicystidium are described based on morphology and molecular analyses: Subulicystidium boidinii, S. fusisporum, S. grandisporum, S. harpagum, S. inornatum, S. oberwinkleri, S. parvisporum, S. rarocrystallinum, S. robustius, S. ryvardenii and S. tedersooi. Morphological and DNA-evidenced borders were revised for the five previously known species: S. naviculatum, S. nikau, S. obtusisporum, S. brachysporum and S. meridense. Species-level variation in basidiospore size and shape was estimated based on systematic measurements of 2840 spores from 67 sequenced specimens. An updated identification key to all known species of Subulicystidium is provided.Entities:
Keywords: DNA barcode; basidiospores; biodiversity; biometry; crystals; cystidia; encrustation; genetic distance; internal transcribed spacer; large subunit; species delimitation; taxonomy
Year: 2018 PMID: 29997447 PMCID: PMC6031700 DOI: 10.3897/mycokeys.35.25678
Source DB: PubMed Journal: MycoKeys ISSN: 1314-4049 Impact factor: 2.984
Ribosomal DNA sequences used in this study with information on voucher specimens. Most sequences are newly generated for this study and ITS and 28S region were sequenced separately. For specimens GB:KHL 14229 and 16100 and TU 124388, single accession number in each case refers to a sequence containing both ITS and 28S regions. Sequences retrieved from other studies are marked with an asterisk. Abbreviation “na” means sequence is not available. In the species , “B” means morphological species concept following Boidin and Gilles (1988), while “T” means the species as described by Talbot (1958).
| Species | Locality | Voucher specimen | Collector(s) | GenBank/UNITE accession numbers | |
|---|---|---|---|---|---|
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| Costa Rica: Puntarenas | GB:KHL 12830 | K.-H. Larsson |
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| Reunion: Saint-Benoit | KAS:L 1584a | M. Striegel |
| na |
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| Argentina: Misiones | O:F: 506782 | L. Ryvarden |
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| Brazil: Paraiba | O:F: KHL 16100 | K.-H. Larsson |
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| Brazil: Rondonia | O:F:KHL 15352 | K.-H. Larsson |
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| Brazil: Sao Paulo | GB:Hjm 16573 | K. Hjortstam |
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| Colombia: Magdalena | O:F: 918493 | L. Ryvarden |
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| Costa Rica: Alajuela | GB:KHL 11216 | K.-H. Larsson |
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| Jamaica: Cornwall | GB:KHL 10763 | K.-H. Larsson |
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| Jamaica: Middlesex | GB:KHL 10566 | K.-H. Larsson | na |
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| Madagascar: Anosy | O:F:KHL 14537 | K.-H. Larsson |
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| Puerto Rico: Isabela | GB:KHL 9544 | K.-H. Larsson |
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| Puerto Rico: Luquillo | GB:KHL 10406 | K.-H. Larsson |
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| Puerto Rico: Luquillo | GB:KHL 10411 | K.-H. Larsson |
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| Reunion: Saint Pierre | KAS:L 0134 | E. Langer |
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| Reunion: Saint-Benoit | KAS:L 1584b | M. Striegel |
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| Reunion: Saint-Pierre | KAS:L 1147 | J. Riebesehl; M. Schroth |
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| Reunion: Saint-Pierre | KAS:L 1498 | M. Striegel |
| na |
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| Reunion: Saint-Pierre | KAS:L 1795 | M. Striegel |
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| Reunion: Saint-Pierre | LY 12293 | G. Gilles |
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| Reunion: Saint-Pierre | LY 12772 | G. Gilles | na |
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| Brazil: Rondonia | O:F:KHL 15318 | K.-H. Larsson |
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| Brazil: Rondonia | O:F:KHL 15327 | K.-H. Larsson |
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| Brazil: Sao Paulo | O:F:LR 24170 | D. Pegler; K. Hjortstam; L. Ryvarden |
| na |
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| Reunion: Saint-Paul | LY 11378 | J. Boidin | na |
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| Costa Rica: Puntarenas | GB:KHL 12761 | K.-H. Larsson |
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| Puerto Rico: Rio Grande | GB:KHL 9093 | K.-H. Larsson |
| na |
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| Puerto Rico: Rio Grande | GB:KHL 10360 | K.-H. Larsson |
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| Costa Rica: Cartago | O:F: 506781 | L. Ryvarden |
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| Colombia: Magdalena | O:F:LR 15736 | L. Ryvarden |
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| Jamaica: Cornwall | GB:KHL 10733 | K.-H. Larsson |
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| Reunion: Saint-Benoit | KAS:L 0244 | E. Langer |
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| Reunion: Saint-Pierre | KAS:L 1726a | M. Striegel |
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| Puerto Rico: Rio Grande | GB:KHL 10444 | K.-H. Larsson |
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| Italy: Sicily | TU 124391 | A. Saitta |
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| Russia: Orel | LE 292121 | S. Volobuev |
| na |
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| Sweden: Skåne | GB:KHL 14229 | K.-H. Larsson |
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| Brazil: Rondonia | O:F:KHL 15322 | K.-H. Larsson |
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| Brazil: Sao Paulo | GB:Hjm 16400 | D. Pegler; K. Hjortstam; L. Ryvarden |
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| Costa Rica: Guanacaste | GB:KHL 11355 | K.-H. Larsson | na |
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| Costa Rica: Guanacaste | GB:KHL 11365 | K.-H. Larsson |
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| Reunion: Saint-Benoit | LY 12816 | G. Gilles | na |
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| Taiwan: Nantou | KAS:GEL 3520 | E. Langer; G. Langer; C.-J. Chen |
| na |
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| Argentina: Misiones | O:F:LR 19581 | L. Ryvarden |
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| Brazil: Rondonia | O:F:KHL 15325 | K.-H. Larsson | na |
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| Colombia: Magdalena | O:F: 918846 | L. Ryvarden |
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| Puerto Rico: Cerro Alto | GB:KHL 9561 | K.-H. Larsson |
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| Puerto Rico: Luquillo | GB:KHL 10397 | K.-H. Larsson |
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| Reunion: Saint-Pierre | KAS:L 1296 | J. Riebesehl; M. Schroth |
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| Venezuela: Aragua | GB:KHL 11042 | K.-H. Larsson | na |
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| Reunion: Saint-Pierre | KAS:L 1860 | J. Riebesehl |
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| Germany: Hesse | FR: Piepenbrink & Lotz-Winter W213-3-I | O. Koukol |
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| Jamaica: Cornwall | GB:KHL 10622 | K.-H. Larsson |
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| Reunion: Saint-Benoit | KAS:L 1226 | J. Riebesehl |
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| Reunion: Saint-Pierre | KAS:GEL 5032 | E. Langer; E. Hennen |
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| Reunion: Saint-Pierre | LY 12750 | G. Gilles | na |
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| Reunion: Saint-Pierre | KAS:L 0140 | E. Langer |
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| Italy: Sicily |
| A.Saitta |
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| Russia: Kaluga | LE 302156 | S. Volobuev |
| na |
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| Colombia: Cundinamarcha | O:F: 918488 | L. Ryvarden |
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| Jamaica: Cornwall | GB:KHL 10780 | K.-H. Larsson |
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| Puerto Rico: Luquillo | GB:KHL 10039 | K.-H. Larsson |
| na |
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| Puerto Rico: Rio Grande | GB:KHL 10272 | K.-H. Larsson |
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| Jamaica: Cornwall | GB:KHL 10813 | K.-H. Larsson |
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| Vietnam: Ninh Bình | TU 110895 | L. Tedersoo |
| na |
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| Vietnam: Ninh Bình | TU 110894 | L. Tedersoo |
| na |
| outgroup: | Spain: Huesca | MA:F 26554 | M. Dueñas, |
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| outgroup: | Sweden: Bohuslän | GB:KHL 8571 | K.-H. Larsson |
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Figure 5.Species of with broad cylindric basidiospores. (KAS:L 1860, holotype): a cystidia b basidiospores. (KAS:L 1296): c cystidia d basidiospores. (KAS:L 1584a, holotype): e mature hymenium f young hymenium g basidiospores. All preparations done in 3% aqueous solution of potassium hydroxide (KOH) mixed with 1% aqueous solution of Phloxine. All scale bars equal 10 µm.
Figure 10.Basidiospore shape and size in all studied species of . Each species is illustrated by a single specimen and herbarium codes are indicated on the figure.
Figure 4.Species of with narrow fusiform basidiospores. (GB:KHL 10360, holotype): a cystidia b crystalline encrustation of hymenium c basidiospores. (GB:KHL 10444, holotype): d cystidia e young hymenium with slight overall encrustation f basidiospores. (TU 110894, holotype): g cystidia, h basidiospores. All preparations done in 3% aqueous solution of potassium hydroxide (KOH) mixed with 1% aqueous solution of Phloxine. All scale bars equal 10 µm.
90% tolerance limits defined for the 90% probability level for the mean basidiospore length, width and length to width ratio for species with at least 3 sequenced specimens. The following specimens were used to estimate tolerance limits for species: : GB:KHL 9093, 10360 and 12761; : GB:KHL 10733, O:F:LR 15736, KAS:L 0244 and 1726a; : KAS:GEL 5032, KAS:L 0140 and 1226 and LY 12750; : GB:KHL 10039, 10272, 10780 and 10813.
| Measurement type | Estimate | Species | |||
|---|---|---|---|---|---|
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| Spore length, µm | Sample mean | 11.78 | 6.74 | 5.61 | 9.78 |
| Lower limit of 90% tolerance interval | 9.64 | 4.34 | 4.78 | 7.81 | |
| Upper limit of 90% tolerance interval | 13.92 | 9.13 | 6.43 | 11.75 | |
| Spore width, µm | Sample mean | 2.92 | 2.6 | 2.51 | 3.00 |
| Lower limit of 90% tolerance interval | 1.65 | 1.62 | 2.06 | 2.44 | |
| Upper limit of 90% tolerance interval | 4.19 | 3.58 | 2.95 | 3.57 | |
| Spore length/width ratio | Sample mean | 4.09 | 2.63 | 2.25 | 3.27 |
| Lower limit of 90% tolerance interval | 1.89 | 0.83 | 1.91 | 2.52 | |
| Upper limit of 90% tolerance interval | 6.28 | 4.42 | 2.59 | 4.02 | |
Figure 6.Species of with long cylindric basidiospores. (LR 29162 in O:F 506781): a hymenium with rich crystalline encrustation b cystidia c basidiospores. (FR: W213-3-I): d cystidia e basidiospores. (LR 15483 in O:F 918488, holotype): f cystidia g hymenium h basidiospores. All preparations done in 3% aqueous solution of potassium hydroxide (KOH) mixed with 1% aqueous solution of Phloxine. All scale bars equal 10 µm.
Figure 7.Species of with smallest cylindric basidiospores. (KAS:L 1726a, holotype): a cystidia b basidiospores. (KAS:L 0140, holotype): c basidiospores d cross sections through fruit-body. Preparations a, b, c done in 3% aqueous solution of potassium hydroxide (KOH) mixed with 1% aqueous solution of Phloxine, preparation d simply in KOH. All scale bars equal 10 µm.
Figure 3.Species of with broad fusiform basidiospores. (GB:KHL 11566): a, b hymenium and basidiospores. (LR 8860/b in O:F 909583, holotype): c, d cystidia e basidiospores. (GB:KHL 10813, holotype): f, g cystidia in hymenium h basidiospores. All preparations done in 3% aqueous solution of potassium hydroxide (KOH) mixed with 1% aqueous solution of Phloxine. All scale bars equal 10 µm.
Figure 11.Basidiospore size range in the short-spored species of . Only measurements from sequenced or important historical collections were included in calculations (in total 67 specimens, 2840 basidiospores). Boxes (with median inside) delimit the range between 5% and 95% data quantiles, while the whiskers show minimum and maximum values without considering outliers (see Materials and Methods for details on excluding outliers). If more than one sequenced specimen was available for species, raw measurements without outliers were pooled to calculate basidiospore size range of the species. In , the capital “B” following epithet means morphological species concept following Boidin and Gilles (1988), while “T” means the species as described by Talbot (1958).
Figure 12.Phylogenetic relationship of based on ITS nrDNA sequences. 50% majority-rule consensus tree from Bayesian analysis is shown, with posterior probabilities above the branches and bootstrap support values from the maximum likelihood estimation below the branches. Tips of the tree are annotated according to morphological identification and marked with colours in non-monophyletic taxa (see legend). In the legend, the capital “B” following epithet in means morphological species concept following Boidin and Gilles (1988), while “T” means the species as described by Talbot (1958).
Figure 14.Phylogenetic relationship of based on concatenated ITS+28S nrDNA alignment. 50% majority-rule consensus tree from Bayesian analysis is shown, with posterior probabilities above the branches and bootstrap support values from the maximum likelihood estimation below the branches. Tips of the tree include GenBank/UNITE accession numbers of ITS followed by 28S region. Tips are annotated according to morphological identification and marked with colours in non-monophyletic taxa (see legend). In the legend, the capital “B” following epithet in means morphological species concept following Boidin and Gilles (1988), while “T” means the species as described by Talbot (1958).
Figure 1.Raw pairwise dissimilarities (proportion of the differing sites, %) between sequences of (a) ITS and (b) 28S region. Three-letter code before each specimen’s number corresponds to a species epithet as explained in the legend.
Figure 2.Verifying the presence of the barcode gap in rDNA sequences of ITS (a, b) and 28S (c, d) regions. a, c Maximal intraspecific divergence compared with minimal interspecific distances between the aligned rDNA sequences in ITS (a) and 28S (c) datasets. Specimens falling above 1:1 line indicate the presence of the barcoding gap (molecular distinctness of the species) b, d Frequency distributions of intra- and interspecific distances without referring to particular species in ITS (b) and 28S (d) datasets. In the legend, the capital “B” following epithet in means morphological species concept following Boidin and Gilles (1988), while “T” means the species as described by Talbot (1958). Three-letter code before each specimen’s number corresponds to a species epithet as explained in the legend
Figure 13.Phylogenetic relationship of based on 28S nrDNA sequences. 50% majority-rule consensus tree from Bayesian analysis is shown, with posterior probabilities above the branches and bootstrap support values from the maximum likelihood estimation below the branches. Tips of the tree are annotated according to morphological identification and marked with colours in non-monophyletic taxa (see legend). In the legend, the capital “B” following epithet in means morphological species concept following Boidin and Gilles (1988), while “T” means the species as described by Talbot (1958).
Figure 8.Species of morphotype. sensu Boidin and Gilles (LR 15784 in O:F 918493): a cystidia in hymenium b crystalline collars on basidioles and slightly encrustated subhymenial hyphae c basidiospores. sensu Talbot (LR 24170 in O:F): d cystidia in hymenium e basidiospores. All preparations done in 3% aqueous solution of potassium hydroxide (KOH) mixed with 1% aqueous solution of Phloxine. All scale bars equal 10 µm.
Figure 9.Species of morphotype. , holotype (TUB:FO 13761): a hymenium with crystalline encrustation and cystidia b basidiospores. from own study (GB:KHL 11365): c cystidia in hymenium d basidiospores. (GB:KHL 9561): e cystidia in hymenium f basidiospores. All preparations done in 3% aqueous solution of potassium hydroxide (KOH) mixed with 1% aqueous solution of Phloxine. All scale bars equal 10 µm.
| 1 | Basidiospores acicular, Q>4.5 |
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| – | Basidiospores cylindrical, fusiform, allantoid to reniform, Q<4.5 |
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| 2 | Basidiospores 12–16 × 2–3 µm, Q=4.5–7 |
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| – | Basidiospores longer, Q>7 |
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| 3 | Basidiospores spirally curved, 27–35 µm long |
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| – | Basidiospores straight or only slightly curved, shorter |
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| 4 | Basidiospores 20–27 × 2–3 µm, cystidial crystalline sheath ends with a bundle of needle-like crystals |
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| – | Basidiospores 16–25 × 1.5–2.5 µm, cystidia with regular ornamentation (rows of rectangular crystals) |
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| 5 | Basidiospores fusiform |
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| – | Basidiospores cylindric to broad cylindric (straight or curved) |
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| 6 | Basidiospores 4–5 µm wide |
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| – | Basidiospores narrower |
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| 7 |
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| – |
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| 8 |
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| – |
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| 9 | Basidiospores 2.5–3.5 µm wide |
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| – | Basidiospores broader than 3.5 µm |
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| 10 | Basidiospores 8.5–11.5 × 2–2.5 µm wide |
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| – | Basidiospores 10.5–12.5 × 2.5–3.5 µm wide |
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| 11 | Basidiospores broad cylindric, Q=1.5–2.5 |
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| – | Basidiospores cylindric, Q=2.5–4.5 |
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| 12 |
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| – |
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| 13 | Basidiospores 7–9 × 3.5–4.5 µm |
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| – | Basidiospores 6–8 × 2.8–3.5 µm |
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| 14 | Basidiospores 3–4 µm wide |
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| – | Basidiospores 2–3 µm wide |
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| 15 | Basidiospores 10–15 µm long |
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| – | Basidiospores shorter |
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| 16 | Basidiospores 9–13 µm long, cystidia with regular rows of rectangular crystals |
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| – | Basidiospores 8–10.5 µm long, cystidia bear rectangular to rounded, rather sparse and irregularly arranged crystals |
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| 17 | Basidiospores 5.0–6.2 µm long |
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| – | Basidiospores longer |
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| 18 | Basidiospores 7–10.5 µm long |
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| – | Basidiospores 6–8 µm long |
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| 19 | Crystal protrusions on cystidia are short rods that project backwards under acute angle, giving cystidia the resemblance of a harpoon |
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| – |
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| 20 | Basidiospores elliptic with attenuated base, usually straight |
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| – | Basidiospores cylindric, straight to regularly curved |
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