Literature DB >> 19854763

SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building.

Manolo Gouy, Stéphane Guindon, Olivier Gascuel.   

Abstract

We present SeaView version 4, a multiplatform program designed to facilitate multiple alignment and phylogenetic tree building from molecular sequence data through the use of a graphical user interface. SeaView version 4 combines all the functions of the widely used programs SeaView (in its previous versions) and Phylo_win, and expands them by adding network access to sequence databases, alignment with arbitrary algorithm, maximum-likelihood tree building with PhyML, and display, printing, and copy-to-clipboard of rooted or unrooted, binary or multifurcating phylogenetic trees. In relation to the wide present offer of tools and algorithms for phylogenetic analyses, SeaView is especially useful for teaching and for occasional users of such software. SeaView is freely available at http://pbil.univ-lyon1.fr/software/seaview.

Mesh:

Year:  2009        PMID: 19854763     DOI: 10.1093/molbev/msp259

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  1833 in total

1.  In situ mass spectrometry monitoring of fungal cultures led to the identification of four peptaibols with a rare threonine residue.

Authors:  Vincent P Sica; Evan R Rees; Huzefa A Raja; José Rivera-Chávez; Joanna E Burdette; Cedric J Pearce; Nicholas H Oberlies
Journal:  Phytochemistry       Date:  2017-07-31       Impact factor: 4.072

2.  The hnRNP Q-like gene is retroinserted into the B chromosomes of the cichlid fish Astatotilapia latifasciata.

Authors:  Bianca O Carmello; Rafael L B Coan; Adauto L Cardoso; Erica Ramos; Bruno E A Fantinatti; Diego F Marques; Rogério A Oliveira; Guilherme T Valente; Cesar Martins
Journal:  Chromosome Res       Date:  2017-08-03       Impact factor: 5.239

3.  Diversity, distribution and dynamics of full-length Copia and Gypsy LTR retroelements in Solanum lycopersicum.

Authors:  Rosalía Cristina Paz; Melisa Eliana Kozaczek; Hernán Guillermo Rosli; Natalia Pilar Andino; Maria Virginia Sanchez-Puerta
Journal:  Genetica       Date:  2017-08-03       Impact factor: 1.082

4.  Metagenomic analysis of the viromes of three North American bat species: viral diversity among different bat species that share a common habitat.

Authors:  Eric F Donaldson; Aimee N Haskew; J Edward Gates; Jeremy Huynh; Clea J Moore; Matthew B Frieman
Journal:  J Virol       Date:  2010-10-06       Impact factor: 5.103

5.  Accelerated and adaptive evolution of yeast sexual adhesins.

Authors:  Xianfa Xie; Wei-Gang Qiu; Peter N Lipke
Journal:  Mol Biol Evol       Date:  2011-06-01       Impact factor: 16.240

6.  Flexible ammonia handling strategies using both cutaneous and branchial epithelia in the highly ammonia-tolerant Pacific hagfish.

Authors:  Alexander M Clifford; Alyssa M Weinrauch; Susan L Edwards; Michael P Wilkie; Greg G Goss
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2017-05-17       Impact factor: 3.619

7.  Development of a panel of recombinase polymerase amplification assays for detection of common bacterial urinary tract infection pathogens.

Authors:  B Raja; H J Goux; A Marapadaga; S Rajagopalan; K Kourentzi; R C Willson
Journal:  J Appl Microbiol       Date:  2017-08       Impact factor: 3.772

8.  A Clonal Lineage of Fusarium oxysporum Circulates in the Tap Water of Different French Hospitals.

Authors:  Véronique Edel-Hermann; Marc Sautour; Nadine Gautheron; Julie Laurent; Serge Aho; Alain Bonnin; Nathalie Sixt; Philippe Hartemann; Frédéric Dalle; Christian Steinberg
Journal:  Appl Environ Microbiol       Date:  2016-10-14       Impact factor: 4.792

9.  Whole genome analysis of sierra nevada virus, a novel mononegavirus in the family nyamiviridae.

Authors:  Matthew B Rogers; Lijia Cui; Adam Fitch; Vsevolod Popov; Amelia P A Travassos da Rosa; Nikos Vasilakis; Robert B Tesh; Elodie Ghedin
Journal:  Am J Trop Med Hyg       Date:  2014-04-28       Impact factor: 2.345

10.  Isolation and characterization of a Rickettsia from the ovary of a Western black-legged tick, Ixodes pacificus.

Authors:  Maryam Alowaysi; Junyan Chen; Sierra Stark; Kristine Teague; Monique LaCourse; Joanna Proctor; Katie Vigil; Jeremy Corrigan; Aja Harding; Jinze Li; Timothy Kurtti; Jianmin Zhong
Journal:  Ticks Tick Borne Dis       Date:  2019-04-30       Impact factor: 3.744

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