Literature DB >> 29997087

[Segmentation of brain tumor on magnetic resonance images using 3D full-convolutional densely connected convolutional networks].

Yi-Hui Huang1, Qian-Jin Feng.   

Abstract

OBJECTIVE: Accurate segmentation of multiple gliomas from multimodal MRI is a prerequisite for many precision medical procedures. To effectively use the characteristics of glioma MRI and im-prove the segmentation accuracy, we proposes a multi-Dice loss function structure and used pre-experiments to select the good hyperparameters (i.e. data dimension, image fusion step, and the implementation of loss function) to construct a 3D full convolution DenseNet-based image feature learning network. This study included 274 segmented training sets of glioma MRI and 110 test sets without segmentation. After grayscale normalization of the image, the 3D image block was extracted as a network input, and the network output used the image block fusion method to obtain the final segmentation result. The proposed structure improved the accuracy of glioma segmentation compared to a general structure. In the on-line assessment of the open BraTS2015 data set, the Dice values for the entire tumor area, tumor core area, and enhanced tumor area were 0.85, 0.71, and 0.63, respectively.

Entities:  

Mesh:

Year:  2018        PMID: 29997087      PMCID: PMC6765705     

Source DB:  PubMed          Journal:  Nan Fang Yi Ke Da Xue Xue Bao        ISSN: 1673-4254


  8 in total

1.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data.

Authors:  J G Sled; A P Zijdenbos; A C Evans
Journal:  IEEE Trans Med Imaging       Date:  1998-02       Impact factor: 10.048

2.  Brain tumor segmentation using holistically nested neural networks in MRI images.

Authors:  Ying Zhuge; Andra V Krauze; Holly Ning; Jason Y Cheng; Barbara C Arora; Kevin Camphausen; Robert W Miller
Journal:  Med Phys       Date:  2017-08-20       Impact factor: 4.071

3.  Brain tumor segmentation based on local independent projection-based classification.

Authors:  Meiyan Huang; Wei Yang; Yao Wu; Jun Jiang; Wufan Chen; Qianjin Feng
Journal:  IEEE Trans Biomed Eng       Date:  2014-05-19       Impact factor: 4.538

4.  A deep learning model integrating FCNNs and CRFs for brain tumor segmentation.

Authors:  Xiaomei Zhao; Yihong Wu; Guidong Song; Zhenye Li; Yazhuo Zhang; Yong Fan
Journal:  Med Image Anal       Date:  2017-10-05       Impact factor: 8.545

5.  A brain tumor segmentation framework based on outlier detection.

Authors:  Marcel Prastawa; Elizabeth Bullitt; Sean Ho; Guido Gerig
Journal:  Med Image Anal       Date:  2004-09       Impact factor: 8.545

6.  Brain tumor segmentation with Deep Neural Networks.

Authors:  Mohammad Havaei; Axel Davy; David Warde-Farley; Antoine Biard; Aaron Courville; Yoshua Bengio; Chris Pal; Pierre-Marc Jodoin; Hugo Larochelle
Journal:  Med Image Anal       Date:  2016-05-19       Impact factor: 8.545

7.  Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation.

Authors:  Konstantinos Kamnitsas; Christian Ledig; Virginia F J Newcombe; Joanna P Simpson; Andrew D Kane; David K Menon; Daniel Rueckert; Ben Glocker
Journal:  Med Image Anal       Date:  2016-10-29       Impact factor: 8.545

Review 8.  The Multimodal Brain Tumor Image Segmentation Benchmark (BRATS).

Authors:  Bjoern H Menze; Andras Jakab; Stefan Bauer; Jayashree Kalpathy-Cramer; Keyvan Farahani; Justin Kirby; Yuliya Burren; Nicole Porz; Johannes Slotboom; Roland Wiest; Levente Lanczi; Elizabeth Gerstner; Marc-André Weber; Tal Arbel; Brian B Avants; Nicholas Ayache; Patricia Buendia; D Louis Collins; Nicolas Cordier; Jason J Corso; Antonio Criminisi; Tilak Das; Hervé Delingette; Çağatay Demiralp; Christopher R Durst; Michel Dojat; Senan Doyle; Joana Festa; Florence Forbes; Ezequiel Geremia; Ben Glocker; Polina Golland; Xiaotao Guo; Andac Hamamci; Khan M Iftekharuddin; Raj Jena; Nigel M John; Ender Konukoglu; Danial Lashkari; José Antonió Mariz; Raphael Meier; Sérgio Pereira; Doina Precup; Stephen J Price; Tammy Riklin Raviv; Syed M S Reza; Michael Ryan; Duygu Sarikaya; Lawrence Schwartz; Hoo-Chang Shin; Jamie Shotton; Carlos A Silva; Nuno Sousa; Nagesh K Subbanna; Gabor Szekely; Thomas J Taylor; Owen M Thomas; Nicholas J Tustison; Gozde Unal; Flor Vasseur; Max Wintermark; Dong Hye Ye; Liang Zhao; Binsheng Zhao; Darko Zikic; Marcel Prastawa; Mauricio Reyes; Koen Van Leemput
Journal:  IEEE Trans Med Imaging       Date:  2014-12-04       Impact factor: 10.048

  8 in total
  1 in total

Review 1.  Artificial intelligence applications for pediatric oncology imaging.

Authors:  Heike Daldrup-Link
Journal:  Pediatr Radiol       Date:  2019-10-16
  1 in total

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