| Literature DB >> 29995194 |
Arnaldo F Silva1, Paul L A Popelier2,3.
Abstract
When electronic correlation energy is partitioned topologically, a detailed picture of its distribution emerges, both within atoms and between any two atoms. This methodology allows one to study dispersion beyond its more narrow definition in long-range Rayleigh-Schrödinger perturbation theory. The interacting quantum atoms (IQA) method was applied to MP2/6-31G(d,p) (uncontracted) wave functions of a wide variety of systems:Entities:
Keywords: Electron correlation; FFLUX; Force field; Interacting quantum atoms (IQA); Quantum chemical topology (QCT)
Year: 2018 PMID: 29995194 PMCID: PMC6061063 DOI: 10.1007/s00894-018-3717-5
Source DB: PubMed Journal: J Mol Model ISSN: 0948-5023 Impact factor: 1.810
Fig. 1Optimized geometry of deprotonated glycine complexing with a single water molecule. A few examples of the three different types of ECEs are highlighted: an oxygen’s atomic correlation energy (encircled), a C-H bond correlation energy (indicated by a double arrow), and some hydrogen bond interactions (marked by dashed lines), such as H(2)….O(10)
Electron correlation energies (ECEs) (kJ mol−1) for the glycine…water complex. Only ECEs larger than 1.0 kJ mol−1 are shown here. All nonbonded intramolecular ECEs smaller than this threshold are added up together under the label “other intramolecular”. Similarly, nonbonded intermolecular ECEs have been added and reported under “other intermolecular”
| Type | Label | Atom or interaction | Correlation energy (kJ mol−1) |
|---|---|---|---|
| Atomic | 1 | N | −481.4 |
| Atomic | 2 | H | −28.5 |
| Atomic | 3 | C | −351.4 |
| Atomic | 4 | C | −205.5 |
| Atomic | 5 | H | −37.7 |
| Atomic | 6 | H | −37.7 |
| Atomic | 7 | O | −555.4 |
| Atomic | 8 | O | −550.4 |
| Atomic | 9 | H | −29.7 |
| Atomic | 10 | O | −489.9 |
| Atomic | 11 | H | −13.6 |
| Atomic | 12 | H | −21.9 |
| Total atomic | −2803.1 | ||
| Bond | 1-2 | N-H | 36.4 |
| Bond | 1-9 | N-H | 38.8 |
| Bond | 1-3 | C-N | 28.3 |
| Bond | 3-4 | C-C | 29.9 |
| Bond | 3-5 | C-H | 41.6 |
| Bond | 3-6 | C-H | 41.7 |
| Bond | 4-8 | C=O | 10.1 |
| Bond | 4-7 | C=O | 3.5 |
| Bond | 10-12 | O-H | 21.4 |
| Bond | 10-11 | O-H | 10.0 |
| Total bond | 261.6 | ||
| Nonbondeda | 8...7 | O...O | 11.6 |
| Nonbondeda | 8...3 | C...O | 6.5 |
| Nonbondeda | 7...3 | C...O | 5.4 |
| Nonbondeda | 4...1 | N...C | 3.7 |
| Nonbondeda | 6...5 | H...H | −5.2 |
| Nonbondeda | 9...2 | H...H | −4.8 |
| Nonbondeda | 8...5 | O...H | −3.5 |
| Nonbondeda | 8...6 | O...H | −3.5 |
| Nonbondeda | 12...11 | H...H | −2.7 |
| Nonbondeda | 9...7 | O...H | −2.6 |
| Nonbondeda | 5...2 | H...H | −2.1 |
| Nonbondeda | 9...6 | H...H | −1.8 |
| Nonbondeda | 7...2 | O...H | −1.2 |
| Nonbondeda | 9...4 | C...H | −1.2 |
| Nonbondeda | 6...1 | N...H | −1.1 |
| Nonbondeda | 9...3 | C...H | −1.1 |
| Othera intramolecular | −6.1 | ||
| Hydrogen bondb | 11...7 | O…H | −3.5 |
| Hydrogen bondb | 10...2 | O...H | −1.8 |
| Hydrogen bondb | 10...7 | O...O | 2.8 |
| Hydrogen bondb | 10...1 | N...O | 1.2 |
| Otherb intermolecular | −3.0 | ||
| Total intra | −9.7 | ||
| Total inter | −4.3 | ||
| Totalc | −14.0 | ||
a) Intramolecular
b) Intermolecular
c) Intramolecular + Intermolecular
Fig. 2Optimized geometry of the D2d configuration of the ethene dimer, reported by several sources as the most stable one
Electron correlation energies (ECEs) (kJ mol−1) for the ethene dimer. Only ECEs larger than 1.0 kJ mol−1 are shown here. All nonbonded intramolecular ECEs smaller than this threshold are omitted but added together to the ones that are larger than 1.0 kJ mol−1 under “total intramolecular”. There were no nonbonded intermolecular ECEs larger than 1.0 kJ mol−1 and their sum can be seen in “total intermolecular”
| Type | Label | Atom or interaction | Correlation energy (kJ mol−1) |
|---|---|---|---|
| Atomic | 1 | C | −413.9 |
| Atomic | 2 | C | −413.9 |
| Atomic | 3 | C | −413.8 |
| Atomic | 4 | C | −413.9 |
| Atomic | 5 | H | −35.5 |
| Atomic | 6 | H | −35.5 |
| Atomic | 7 | H | −35.5 |
| Atomic | 8 | H | −35.5 |
| Atomic | 9 | H | −35.5 |
| Atomic | 10 | H | −35.5 |
| Atomic | 11 | H | −35.5 |
| Atomic | 12 | H | −35.5 |
| Total atomic | −1939.2 | ||
| Bond | 1-2 | C-C | 142.5 |
| Bond | 3-4 | C-C | 142.6 |
| Bond | 5-2 | C-H | 38.2 |
| Bond | 6-1 | C-H | 38.2 |
| Bond | 9-2 | C-H | 37.5 |
| Bond | 10-1 | C-H | 37.5 |
| Bond | 7-4 | C-H | 38.2 |
| Bond | 8-3 | C-H | 38.2 |
| Bond | 12-4 | C-H | 37.5 |
| Bond | 11-3 | C-H | 37.5 |
| Total bond | 587.9 | ||
| Nonbondeda | 5...1 | C...H | −1.3 |
| Nonbondeda | 9...1 | C...H | −1.0 |
| Nonbondeda | 6...2 | C...H | −1.3 |
| Nonbondeda | 10...2 | C...H | −1.0 |
| Nonbondeda | 7...3 | C...H | −1.4 |
| Nonbondeda | 12...3 | C...H | −1.0 |
| Nonbondeda | 6...4 | C...H | −1.3 |
| Nonbondeda | 11...4 | C...H | −1.0 |
| Nonbondeda | 9...5 | H...H | −4.2 |
| Nonbondeda | 10...6 | H...H | −4.2 |
| Nonbondeda | 12...7 | H...H | −4.2 |
| Nonbondeda | 11...8 | H...H | −4.2 |
| Nonbondeda | 6...5 | H...H | −2.8 |
| Nonbondeda | 10...9 | H...H | −2.6 |
| Nonbondeda | 12...11 | H...H | −2.6 |
| Nonbondeda | 8....7 | H...H | −2.8 |
| Nonbondeda | 9...6 | H...H | −1.0 |
| Nonbondeda | 10...5 | H...H | −1.0 |
| Nonbondeda | 11...7 | H...H | −1.0 |
| Nonbondeda | 12...8 | H...H | −1.0 |
| Total intramolecular | −41.2 | ||
| Total intermolecular | −2.8 | ||
| Total Nonbondedb | −44.0 | ||
a) Intramolecular
b) Intramolecular + intermolecular
Fig. 3Optimized geometry of benzene and cyclobutadiene, and the representation of their delocalized and localized bonds, respectively. Some examples of C…H interactions are marked in benzene in order to better understand entries in Table 3
Electron correlation energies (ECEs) (kJ mol−1) for benzene. The total energy for the electronic correlation of benzene can be obtained by multiplying the ECE value of each identical atom or interaction by the number of occurrences
| Type | Atom or interaction | Number of occurrences | Correlation energy (kJ mol−1) |
|---|---|---|---|
| Atomic | C | 6 | −406.4 |
| Atomic | H | 6 | −48.4 |
| Total atomic | −2728.9 | ||
| Bond | C-C | 6 | 62.2 |
| Bond | C-H | 6 | 34.2 |
| Total bond | 578.6 | ||
| Nonbonded | C...C | Meta 6 | 10.2 |
| Nonbonded | C...C | Para 3 | 6.6 |
| Nonbonded | C...H | Ortho 12 | −0.1 |
| Nonbonded | C...H | Meta 12 | −0.2 |
| Nonbonded | C...H | Para 6 | −0.6 |
| Nonbonded | H...H | Ortho 6 | −2.8 |
| Nonbonded | H...H | Meta 6 | −0.3 |
| Nonbonded | H...H | Para 6 | −0.5 |
| Total nonbonded | 52.3 | ||
Fig. 4Complete IQA fingerprint of carbon, hydrogen, and the CC and CH bonds in benzene. Negative energies appear on the left, as the original signs are reintroduced after the log operation; for example, hydrogen’s Coulomb energy is about −2250 ≈ −103.4 kJ mol−1
Electron correlation energies (ECEs) (kJ mol−1) for cyclobutadiene. The total energy for the electronic correlation of cyclobutadiene can be obtained by multiplying the ECE value of each identical atoms or interaction by the number of occurrences
| Type | Atom or interaction | Number of occurrences | Correlation energy (kJ mol−1) |
|---|---|---|---|
| Atomic | C | 4 | −430.6 |
| Atomic | H | 4 | −35.0 |
| Total atomic | −1862.3 | ||
| Bond | C-C | 2 | 29.8 |
| Bond | C=C | 2 | 159.9 |
| Bond | C-H | 4 | 37.1 |
| Total bond | 527.9 | ||
| Nonbonded | C...C (1...3) | 2 | 10.1 |
| Nonbonded | C...H(1...3, double) | 4 | −1.1 |
| Nonbonded | C...H(1...3, single) | 4 | −1.4 |
| Nonbonded | C...H (1...4) | 4 | −0.3 |
| Nonbonded | H...H(1,3 double) | 2 | −2.0 |
| Nonbonded | H...H(1,3, single) | 2 | −1.7 |
| Nonbonded | H...H(1-4) | 2 | −0.8 |
| Total nonbonded | 0.0 | ||
Fig. 5Optimized geometry of H3NBH3. A few examples of the most important ECEs are highlighted: the B-H and N-H bond correlation energies are indicated by a black arrow and the B-N bond correlation is marked by a dashed line
Electron correlation energies (ECEs) (kJ mol−1) for NH3BH3
| Type | Label | Atom or interaction | Correlation energy (kJ mol−1) |
|---|---|---|---|
| Self | 1 | B | −55.5 |
| Self | 2 | N | −496.0 |
| Self | 3 | H | −58.1 |
| Self | 4 | H | −58.1 |
| Self | 5 | H | −58.1 |
| Self | 6 | H | −30.9 |
| Self | 7 | H | −30.9 |
| Self | 8 | H | −30.9 |
| Total self | −818.4 | ||
| Bond | 1-3 | B-H | −9.4 |
| Bond | 1-4 | B-H | −9.4 |
| Bond | 1-5 | B-H | −9.4 |
| Bond | 2-6 | H-N | 30.5 |
| Bond | 2-7 | H-N | 30.5 |
| Bond | 2-8 | H-N | 30.5 |
| Total bond | 63.4 | ||
| Nonbonded | 1...2 | B...N | −7.6 |
| Nonbonded | 4...2 | N...H | 1.1 |
| Nonbonded | 3...2 | N...H | 1.1 |
| Nonbonded | 5...2 | N...H | 1.1 |
| Nonbonded | 6...1 | B...H | 0.2 |
| Nonbonded | 7...1 | B...H | 0.2 |
| Nonbonded | 8...1 | B...H | 0.2 |
| Nonbonded | 3...5 | H...H (BH) | −1.3 |
| Nonbonded | 3...4 | H...H (BH) | −1.3 |
| Nonbonded | 4...5 | H...H (BH) | −1.3 |
| Nonbonded | 6...7 | H...H (NH) | −4.1 |
| Nonbonded | ¨6...8 | H...H (NH) | −4.1 |
| Nonbonded | 7...8 | H...H (NH) | −4.1 |
| Nonbonded | 3...6 | H...H | 0.0 |
| Nonbonded | 3...7 | H...H | −1.6 |
| Nonbonded | 3...8 | H...H | −1.6 |
| Nonbonded | 4...6 | H...H | −1.6 |
| Nonbonded | 4...7 | H...H | −1.6 |
| Nonbonded | 4...8 | H...H | 0.0 |
| Nonbonded | 5...6 | H...H | −1.6 |
| Nonbonded | 5...7 | H...H | 0.0 |
| Nonbonded | 5...8 | H...H | −1.6 |
| Total nonbonded | −30.0 | ||