| Literature DB >> 29995183 |
Omar Youssef1, Leo Lahti2, Arto Kokkola3, Tiina Karla4, Milja Tikkanen4, Homa Ehsan1, Monika Carpelan-Holmström3, Selja Koskensalo3, Tom Böhling5, Hilpi Rautelin6, Pauli Puolakkainen3, Sakari Knuutila7, Virinder Sarhadi1.
Abstract
BACKGROUND: Microbial ecosystems that inhabit the human gut form central component of our physiology and metabolism, regulating and modulating both health and disease. Changes or disturbances in the composition and activity of this gut microbiota can result in altered immunity, inflammation, and even cancer. AIM: To compare the composition and diversity of gut microbiota in stool samples from patient groups based on the site of neoplasm in the gastrointestinal tract (GIT) and to assess the possible contribution of the bacterial composition to tumorigenesis.Entities:
Keywords: 16S rRNA gene sequencing; Fecal microbiota; Gastrointestinal neoplasms
Mesh:
Substances:
Year: 2018 PMID: 29995183 PMCID: PMC6182444 DOI: 10.1007/s10620-018-5190-5
Source DB: PubMed Journal: Dig Dis Sci ISSN: 0163-2116 Impact factor: 3.199
Characteristics of patients studied for stool microbiota analysis
| Tumor site | Av. age in years (range) | Gender | Total | |
|---|---|---|---|---|
| Male | Female | |||
| Controlsb | 43.8 (19–65) | 3 | 10 | 13 |
| Stomach | 69.4 (36–98) | 17 | 18 | 35 |
| Pancreas | 62.3 (57–67) | 1 | 2 | 3 |
| Small intestine | 61.5 (39–79) | 3 | 0 | 3 |
| Colon | 74.8 (64–84) | 6 | 7 | 13 |
| Rectum | 73.6 (39–85) | 7 | 2 | 9 |
| Treateda | 66.9 (53–78) | 11 | 9 | 20 |
aTreated group includes samples from those patients with gastrointestinal neoplasm, who had already undergone cancer treatment at the time of sample collection
bControls include samples from healthy individuals without any gastrointestinal disease
Fig. 1Principal coordinates analysis showing beta diversities across different gastrointestinal neoplasm groups based on genus-level bacterial profiles
Fig. 2Observed richness and alpha diversity of bacteria at the genus level. Median relative abundance for the control group is shown by dashed line along y-axis. Adjusted p values for pairwise comparisons between gastrointestinal neoplasm groups and controls at the bacterial genus level are shown for each group
Bacteria with significant difference in relative abundance in stools of patients groups based on location of neoplasm in the gastrointestinal tract compared to healthy individuals
| Patient group | Relative abundance in patient group (%) | Relative abundance in controls (%) | Log10FC | |
|---|---|---|---|---|
| Family | ||||
| Enterobacteriaceae | Stomach | 5.1 | 0.2 | 1.5 |
| Lactobacillaceae | Pancreas | 0.0 | 1.9 | NAb |
| Enterobacteriaceae | Small intestine | 5.2 | 0.2 | 1.5 |
| Lactobacillaceae | Colon | 0.1 | 1.9 | − 1.1 |
| Acidaminococcaceae | Colon | 0.1 | 0.9 | − 1.0 |
| Bifidobacteriaceae | Rectum | 0.0 | 0.2 | NAb |
| Enterobacteriaceae | All non-treated | 5.5 | 0.2 | 1.5 |
| Bifidobacteriaceae | Treated | 0.2 | 0.2 | − 0.1 |
| Lactobacillaceae | Treated versus non-treated | 1.1 | 0.7a | 0.2 |
| Genus | ||||
| | Stomach | 2.9 | 0.8 | 0.6 |
| | Stomach | 0.2 | 0.0 | 1.4 |
| | Stomach | 0.4 | 0.6 | − 0.2 |
| | Stomach | 0.1 | 0.2 | − 0.6 |
| | Pancreas | 0.5 | 5.0 | − 1.0 |
| | Small intestine | 0.10 | 0.6 | − 1.0 |
| | Colon | 0.1 | 0.0 | 1.1 |
| | Colon | 0.2 | 0.6 | − 0.5 |
| | Colon | 0.0 | 0.2 | − 1.0 |
| | Rectum | 0.0 | 0.4 | − 1.8 |
| | All non-treated | 2.9 | 0.8 | 0.6 |
| | All non-treated | 0.2 | 0.0 | 1.4 |
| | All non-treated | 0.4 | 0.6 | − 0.1 |
| | All non-treated | 0.1 | 0.2 | − 0.6 |
| | Treated | 0.0 | 0.4 | − 1.7 |
| | Treated | 0.3 | 0.6 | − 0.4 |
| | Treated | 0.0 | 0.2 | − 0.7 |
| | Treated versus non-treated | 0.9 | 0.7a | 0.1 |
aRelative abundance in non-treated patients
bFold change is not shown where one of the groups has zero average abundance
Fig. 3Comparison of different gastrointestinal neoplasm groups with respect to altered relative abundance of bacteria at the genus level. Elevated and reduced levels are indicated by direction of the arrows