Literature DB >> 29993581

MfeCNN: Mixture Feature Embedding Convolutional Neural Network for Data Mapping.

Dingcheng Li, Ming Huang, Xiaodi Li, Yaoping Ruan, Lixia Yao.   

Abstract

Data mapping plays an important role in data integration and exchanges among institutions and organizations with different data standards. However, traditional rule-based approaches and machine learning methods fail to achieve satisfactory results for the data mapping problem. In this paper, we propose a novel and sophisticated deep learning framework for data mapping called mixture feature embedding convolutional neural network (MfeCNN). The MfeCNN model converts the data mapping task to a multiple classification problem. In the model, we incorporated multimodal learning and multiview embedding into a CNN for mixture feature tensor generation and classification prediction. Multimodal features were extracted from various linguistic spaces with a medical natural language processing package. Then, powerful feature embeddings were learned by using the CNN. As many as 10 classes could be simultaneously classified by a softmax prediction layer based on multiview embedding. MfeCNN achieved the best results on unbalanced data (average F1 score, 82.4%) among the traditional state-of-the-art machine learning models and CNN without mixture feature embedding. Our model also outperformed a very deep CNN with 29 layers, which took free texts as inputs. The combination of mixture feature embedding and a deep neural network can achieve high accuracy for data mapping and multiple classification.

Entities:  

Mesh:

Year:  2018        PMID: 29993581      PMCID: PMC6118402          DOI: 10.1109/TNB.2018.2841053

Source DB:  PubMed          Journal:  IEEE Trans Nanobioscience        ISSN: 1536-1241            Impact factor:   2.935


  6 in total

1.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

2.  Rule-based support system for multiple UMLS semantic type assignments.

Authors:  James Geller; Zhe He; Yehoshua Perl; C Paul Morrey; Julia Xu
Journal:  J Biomed Inform       Date:  2012-10-03       Impact factor: 6.317

3.  Quality Assurance of UMLS Semantic Type Assignments Using SNOMED CT Hierarchies.

Authors:  H Gu; Y Chen; Z He; M Halper; L Chen
Journal:  Methods Inf Med       Date:  2015-04-30       Impact factor: 2.176

4.  Semi-supervised Convolutional Neural Networks for Text Categorization via Region Embedding.

Authors:  Rie Johnson; Tong Zhang
Journal:  Adv Neural Inf Process Syst       Date:  2015-12

5.  Serving the enterprise and beyond with informatics for integrating biology and the bedside (i2b2).

Authors:  Shawn N Murphy; Griffin Weber; Michael Mendis; Vivian Gainer; Henry C Chueh; Susanne Churchill; Isaac Kohane
Journal:  J Am Med Inform Assoc       Date:  2010 Mar-Apr       Impact factor: 4.497

Review 6.  Clinical information extraction applications: A literature review.

Authors:  Yanshan Wang; Liwei Wang; Majid Rastegar-Mojarad; Sungrim Moon; Feichen Shen; Naveed Afzal; Sijia Liu; Yuqun Zeng; Saeed Mehrabi; Sunghwan Sohn; Hongfang Liu
Journal:  J Biomed Inform       Date:  2017-11-21       Impact factor: 6.317

  6 in total
  3 in total

Review 1.  Deep learning in clinical natural language processing: a methodical review.

Authors:  Stephen Wu; Kirk Roberts; Surabhi Datta; Jingcheng Du; Zongcheng Ji; Yuqi Si; Sarvesh Soni; Qiong Wang; Qiang Wei; Yang Xiang; Bo Zhao; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2020-03-01       Impact factor: 4.497

2.  Serendipity-A Machine-Learning Application for Mining Serendipitous Drug Usage From Social Media.

Authors:  Boshu Ru; Dingcheng Li; Yueqi Hu; Lixia Yao
Journal:  IEEE Trans Nanobioscience       Date:  2019-04-04       Impact factor: 2.935

3.  Evaluating global and local sequence alignment methods for comparing patient medical records.

Authors:  Ming Huang; Nilay D Shah; Lixia Yao
Journal:  BMC Med Inform Decis Mak       Date:  2019-12-19       Impact factor: 2.796

  3 in total

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