| Literature DB >> 29992127 |
Takuya Komura1, Masaaki Yano2, Akimitsu Miyake3, Hisashi Takabatake2, Masaki Miyazawa2, Norihiko Ogawa1, Akihiro Seki1, Masao Honda4, Takashi Wada5, Shigeyuki Matsui3, Shuichi Kaneko1,4, Yoshio Sakai4.
Abstract
Background: Colorectal cancer (CRC), the most common malignancy worldwide, causes inflammation. We explored the inflammatory pathophysiology of CRC by assessing the peripheral blood parameters.Entities:
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Year: 2018 PMID: 29992127 PMCID: PMC6016223 DOI: 10.1155/2018/7436205
Source DB: PubMed Journal: Can J Gastroenterol Hepatol ISSN: 2291-2789
Figure 1Serum concentrations of eotaxin-1 and IL-8. Sera were obtained from CRC patients (n=30) prior to treatment and healthy volunteers (n=28). The serum concentrations of cytokines and chemokines were measured using a multiplex bead immunoassay system. (a) IL-8 levels; (b) eotaxin-1 levels. IL-8 levels in CRC patients by clinical stage (c) and eotaxin-1 levels by clinical stage (d). Correlations between IL-8 and CEA levels in CRC patients (e) and between IL-8 and CA19-9 levels (f).
Figure 2Unsupervised clustering analysis of the gene expression profiles of subfractionated peripheral blood cells. The dendrogram used for clustering using employed both correlations and average linkage for unsupervised analysis of the gene expression profile of peripheral blood. Significant up- or downregulated changes in gene expression (≥1.5-fold) in whole blood and CD4+ cells of CRC patients (compared to healthy volunteers) were observed for 3,243 and 2,459 genes at P-values <0.05, respectively, but few such changes were observed in CD8+ cells, CD14+ cells, or CD15+ cells (1,475, 128, and 333 genes; P <0.05, respectively).
Figure 3Spearman correlation coefficients between genes expressed by CD4+ cells. Genes expressed by CD4+ cells of CRC patients and healthy volunteers, with two-sided p-values, (a) eotaxin-1 and (b) IL-8 levels.
Biological process networks for 1063 genes whose expression in peripheral CD4+ cells was positively correlated with serum eotaxin concentration.
| Networks | Total |
| False discovery rate | In data | Network objects from active data |
|---|---|---|---|---|---|
| Immune response_Phagocytosis | 222 | 2.27E-08 | 1.81E-06 | 33 | ITGB2, Syk, IL-15, RhoA, Myosin I, C/EBP, Dectin-1, Fc gamma RII beta, ILT4, MSN (moesin), ERM proteins, SHPS-1, Fc epsilon RI gamma, MSR1, MANR, Lyn, PLC-gamma 2, IL-15RA, Btk, ILT2, Hck, TLR4, MARCO, MARCKS, MLCK, PLC-gamma, gp91-phox, p40-phox, PAK1, p67-phox, FGR, Fc alpha receptor, Fc gamma RII alpha |
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| Cell adhesion_Platelet aggregation | 158 | 2.34E-08 | 1.81E-06 | 27 | ITGB2, Syk, GAB2, PLA2, RhoA, Thrombospondin 1, G-protein beta/gamma, COX-1 (PTGS1), Fc epsilon RI gamma, c-Src, ENP1, THAS, cPLA2, PTAFR, Lyn, PLC-gamma 2, PKA-reg (cAMP-dependent), GP-IX, P2Y12, Gab, G-protein alpha-i family, G-protein alpha-i2, P2X1, MLCK, PLC-gamma, CD36, VAV-2 |
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| Cell adhesion_Amyloid proteins | 195 | 6.02E-06 | 3.09E-04 | 26 | RhoA, FZD1, Nicastrin, NOTCH2, APLP2 active fragment, G-protein beta/gamma, Jagged1, Nidogen, p120-catenin, Tcf(Lef), c-Src, Presenilin 2, FZD2, FZD5, Notch, Presenilin 1, Alpha-catenin, APLP2 precursor, Cathepsin D, MALS, Frizzled, ADAM9, PKC, PAK1, Plakoglobin, Presenilin |
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| Immune response_Antigen presentation | 197 | 6.23E-05 | 2.40E-03 | 24 | CIITA, ICAM1, MHC class II beta chain, CD1b, HLADPA1, CD1d, HLA-DQA1, JAK2, HA2Z, Fc epsilon RI gamma, IP-30, HLA-DM, HLA-DRB1, CD1a, Cathepsin S, LFA-3, MHC class II, HLA-DQB1, HLA-DRA1, HLA-DPB1, HLA-DRB4, CD86, CD74, RING6 |
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| Proliferation_Positive regulation cell proliferation | 221 | 1.48E-04 | 4.56E-03 | 25 | p21, HGF, RhoG, Beta-arrestin1, GAB2, Fra-1, RhoA, Galpha(i)-specific peptide GPCRs, JAK2, MTG16 (CBFA2T3), c-Src, VEGF-A, RasGRP4, PKA-reg (cAMP-dependent), G-protein alpha-15, TCIRG1 (Atp6i), CCR1, G-protein alpha-i family, M-CSF receptor, G-protein alpha-i2, CSDA, MLCK, c-Fes, FLT3, PAK1 |
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| Chemotaxis | 137 | 2.00E-04 | 5.14E-03 | 18 | ITGB2, Syk, C5aR, Fra-1, GRO-2, Prokineticin 2, PD-ECGF (TdRPase), IL-1 beta, Galpha(i)-specific peptide GPCRs, PLAUR (uPAR), MIG, Integrin, VEGF-A, PTAFR, CCR1, G-protein alpha-i family, Galpha(q)-specific peptide GPCRs, PLD1 |
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| Inflammation_IFN-gamma signaling | 109 | 4.08E-04 | 8.97E-03 | 15 | CIITA, p21, ITGB2, IL-15, IL-18, ICAM1, PKC-delta, K12, JAK2, MIG, c-Src, PLC-gamma 2, TLR4, PLC-gamma, Fc alpha receptor |
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| Apoptosis_Anti-apoptosis mediated by external signals via NF-kB | 111 | 4.97E-04 | 9.57E-03 | 15 | IL-15, MyD88, G-protein beta/gamma, TNF-R2, VEGF-A, CD30(TNFRSF8), CSF2RA, PKA-reg (cAMP-dependent), IL-15RA, G-protein alpha-i family, TLR4, Bcl-3, TL1A(TNFSF15), APRIL(TNFSF13), BAFF(TNFSF13B) |
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| Inflammation_Neutrophil activation | 215 | 6.08E-04 | 1.02E-02 | 23 | ITGB2, C5aR, PLA2, ICAM1, GRO-2, RhoA, PKC-delta, G-protein beta/gamma, TNF-R2, Galpha(i)-specific peptide GPCRs, Syntaxin 7, cPLA2, Btk, G-protein alpha-15, G-protein alpha-i family, G-protein alpha-i2, PA24A, gp91-phox, ALOX5, p40-phox, PAK1, p67-phox, PLD1 |
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| Inflammation_IL-4 signaling | 115 | 7.27E-04 | 1.02E-02 | 15 | HLADPA1, HLA-DQA1, JAK2, MHC class II, Bax, HLA-DQB1, HLA-DRA1, HLA-DPB1, HLA-DRB4, CD86, CD74, c-Fes, CD13, IL13RA1, Fc gamma RII alpha |
Biological process networks for 974 genes whose expression was negatively correlated with CD4+ peripheral blood cells and Eotaxin.
| Networks | Total |
| False discovery rate | In data | Network objects from active data |
|---|---|---|---|---|---|
| Proteolysis_ECM remodeling | 85 | 5.38E-05 | 7.21E-03 | 10 | Collagen XIV, Tenascin-C, NEPH2, MMP-16, Protein C inhibitor, Serpin B12, COL18A1, Kallikrein 2, Trypsin II, Aggrecanase-1 |
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| Neurophysiological process_Transmission of nerve impulse | 212 | 3.13E-04 | 2.10E-02 | 15 | L-type Ca(II) channel, alpha 1C subunit, GABA-A receptor gamma-2 subunit, KCC2, mGluR3, Galpha(i)-specific peptide GPCRs, mGluR1, Galpha(q)-specific metabotropic glutamate GPCRs, Ionotropic glutamate receptor, Galpha(i)-specific metabotropic glutamate GPCRs, GluR6, Galpha(i)-specific amine GPCRs, CHT1, RIN, G-protein alpha-s, Kainate receptor |
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| Reproduction_Gonadotropin regulation | 199 | 1.64E-03 | 5.29E-02 | 13 | L-type Ca(II) channel, alpha 1C subunit, GABA-A receptor gamma-2 subunit, mGluR3, mGluR1, Galpha(q)-specific metabotropic glutamate GPCRs, Ionotropic glutamate receptor, Galpha(i)-specific metabotropic glutamate GPCRs, Secretogranin 1, Protein kinase G1, Adenylate cyclase, G-protein alpha-s, Protein kinase G, Kainate receptor |
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| Development_Blood vessel morphogenesis | 228 | 1.97E-03 | 5.29E-02 | 14 | PDE, Galpha(i)-specific peptide GPCRs, PDE7A, Endomucin, Galpha(q)-specific amine GPCRs, Galpha(i)-specific amine GPCRs, Protein kinase G1, Galpha(q)-specific peptide GPCRs, COL18A1, Tissue kallikreins, Neuropilin-1, G-protein alpha-s, Protein kinase G, Transferrin |
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| Reproduction_Spermatogenesis, motility and copulation | 228 | 1.97E-03 | 5.29E-02 | 14 | PDGF receptor, MFGE8, IGF-1 receptor, Ropporin, MSK1, S5AR2, BBS2, Tissue kallikreins, BMP2, Kallikrein 2, SOX5, CREM (activators), ZFP37, PDGF-R-alpha |
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| Proteolysis_Connective tissue degradation | 119 | 3.23E-03 | 6.80E-02 | 9 | Trypsin, Tenascin-C, MMP-16, Protein C inhibitor, Serpin B12, Tissue kallikreins, Kallikrein 2, Trypsin II, Aggrecanase-1 |
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| Development_Neurogenesis in general | 192 | 3.55E-03 | 6.80E-02 | 12 | WNT4, RET, CHRM, Neuromodulin, WNT7A, WNT, Galpha(q)-specific amine GPCRs, Galpha(i)-specific amine GPCRs, HDAC7, ACM3, SOX8, SOX14 |
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| Development_Cartilage development | 66 | 6.45E-03 | 1.08E-01 | 6 | TR-alpha, Noggin, COL1A2, BMP2, SOX5, Aggrecanase-1 |
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| Reproduction_Male sex differentiation | 243 | 8.98E-03 | 1.30E-01 | 13 | AP-2A, PDGF receptor, Olfactory receptor, RET, IGF-1 receptor, MSK1, S5AR2, HSF2, BMP2, SOX5, CREM (activators), ZFP37, PDGF-R-alpha |
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| Reproduction_GnRH signaling pathway | 166 | 9.70E-03 | 1.30E-01 | 10 | GABA-A receptor gamma-2 subunit, mGluR3, mGluR1, Galpha(q)-specific metabotropic glutamate GPCRs, Ionotropic glutamate receptor, Galpha(i)-specific metabotropic glutamate GPCRs, Protein kinase G1, G-protein alpha-s, Protein kinase G, Kainate receptor |
Biological process networks for 250 genes whose expression in peripheral CD4+ cells was positively correlated with serum IL-8 concentration.
| Networks | Total |
| False discovery rate | In data | Network objects from active data |
|---|---|---|---|---|---|
| Cytoskeleton_Actin filaments | 176 | 2.12E-05 | 2.31E-03 | 10 | Actin muscle, Talin, Tropomyosin, RhoA, Myosin I, CAPZA, MELC, TARA, Actin, CAPZA1 |
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| Cytoskeleton_Regulation of cytoskeleton rearrangement | 183 | 8.79E-04 | 3.67E-02 | 8 | Actin muscle, Talin, RhoA, CAPZA, MELC, TARA, Actin, CAPZA1 |
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| Development_Skeletal muscle development | 144 | 1.01E-03 | 3.67E-02 | 7 | ACTA2, Smooth muscle myosin, Actin muscle, Tropomyosin, RhoA, MELC, Actin |
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| Muscle contraction | 173 | 2.90E-03 | 6.54E-02 | 7 | ACTA2, Syntrophin B, Smooth muscle myosin, Actin muscle, Tropomyosin, MELC, Actin |
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| Immune response_Phagocytosis | 222 | 3.00E-03 | 6.54E-02 | 8 | ILT2, Talin, CD63, RhoA, Myosin I, MSR1, MELC, Actin |
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| Cell adhesion_Integrin priming | 110 | 7.22E-03 | 1.17E-01 | 5 | ACTA2, ITGA2B, Talin, Integrin, Actin |
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| Cell adhesion_Platelet aggregation | 158 | 7.84E-03 | 1.17E-01 | 6 | COX-1 (PTGS1), Talin, RhoA, ENP1, MELC, GP-IB beta |
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| Cell adhesion_Integrin-mediated cell-matrix adhesion | 214 | 9.17E-03 | 1.17E-01 | 7 | ITGA2B, ITGB5, Talin, Integrin, RhoA, MELC, Actin |
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| Inflammation_Amphoterin signaling | 118 | 9.64E-03 | 1.17E-01 | 5 | ITGAM, MyD88, RhoA, MELC, Actin |
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| Proteolysis_Proteolysis in cell cycle and apoptosis | 125 | 1.22E-02 | 1.33E-01 | 5 | Presenilin 2, Cathepsin C, FBX6, Pseudo-ICE, Presenilin |
Biological process networks for 586 genes whose expression in peripheral CD4+ cells was negatively correlated with serum IL-8 concentration.
| Networks | Total |
| False discovery rate | In data | Network objects from active data |
|---|---|---|---|---|---|
| Muscle contraction | 173 | 2.69E-03 | 1.78E-01 | 7 | K(+) channel, subfamily J, Dystrophin, PKC-alpha, MyHC, PKC, Titin, cPKC (conventional) |
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| Development_Blood vessel morphogenesis | 228 | 3.26E-03 | 1.78E-01 | 8 | PDE3B, PKC-alpha, COL18A1, PDE, PDE9A, TERT, PDE7A, Endomucin |
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| Cardiac development_Wnt_beta-catenin, Notch, VEGF, IP3 and integrin signaling | 150 | 5.75E-03 | 2.09E-01 | 6 | PKC-alpha, Polycystin, CHIBBY, MyHC, Titin, LRP6 |
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| Cardiac development_FGF_ErbB signaling | 124 | 1.12E-02 | 3.05E-01 | 5 | PKC-alpha, Polycystin, MyHC, Titin, gp130 |
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| Development_Skeletal muscle development | 144 | 2.02E-02 | 4.41E-01 | 5 | Dystrophin, HDAC7, Histone deacetylase class II, MyHC, Titin |
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| Proliferation_Positive regulation cell proliferation | 221 | 3.32E-02 | 5.15E-01 | 6 | PUR-alpha, RASGRF1, COL18A1, IGF-1 receptor, IL-11 receptor, gp130 |
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| Development_Cartilage development | 66 | 3.51E-02 | 5.15E-01 | 3 | TR-alpha, Noggin, Aggrecanase-1 |
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| Reproduction_Spermatogenesis, motility and copulation | 228 | 3.78E-02 | 5.15E-01 | 6 | MSK1, MFGE8, Oct-3/4, IGF-1 receptor, PKC, ZFP37 |
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| Reproduction_Male sex differentiation | 243 | 4.90E-02 | 5.41E-01 | 6 | MSK1, Oct-3/4, IGF-1 receptor, PKC, ZFP37, PMEPA1 |
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| Transcription_Chromatin modification | 127 | 4.97E-02 | 5.41E-01 | 4 | SATB1, MSK1, HDAC7, Histone deacetylase class II |