Literature DB >> 27159849

Performance evaluation of automated segmentation software on optical coherence tomography volume data.

Jing Tian1, Boglarka Varga2, Erika Tatrai2, Palya Fanni2, Gabor Mark Somfai2, William E Smiddy1, Delia Cabrera Debuc3.   

Abstract

Over the past two decades a significant number of OCT segmentation approaches have been proposed in the literature. Each methodology has been conceived for and/or evaluated using specific datasets that do not reflect the complexities of the majority of widely available retinal features observed in clinical settings. In addition, there does not exist an appropriate OCT dataset with ground truth that reflects the realities of everyday retinal features observed in clinical settings. While the need for unbiased performance evaluation of automated segmentation algorithms is obvious, the validation process of segmentation algorithms have been usually performed by comparing with manual labelings from each study and there has been a lack of common ground truth. Therefore, a performance comparison of different algorithms using the same ground truth has never been performed. This paper reviews research-oriented tools for automated segmentation of the retinal tissue on OCT images. It also evaluates and compares the performance of these software tools with a common ground truth.
© 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  Optical coherence tomography; Spectralis SD-OCT; automated segmentation software; ground truth; performance evaluation

Mesh:

Year:  2016        PMID: 27159849      PMCID: PMC5025289          DOI: 10.1002/jbio.201500239

Source DB:  PubMed          Journal:  J Biophotonics        ISSN: 1864-063X            Impact factor:   3.207


  24 in total

1.  Retinal thickness measurements from optical coherence tomography using a Markov boundary model.

Authors:  D Koozekanani; K Boyer; C Roberts
Journal:  IEEE Trans Med Imaging       Date:  2001-09       Impact factor: 10.048

2.  Robust segmentation of intraretinal layers in the normal human fovea using a novel statistical model based on texture and shape analysis.

Authors:  Vedran Kajić; Boris Povazay; Boris Hermann; Bernd Hofer; David Marshall; Paul L Rosin; Wolfgang Drexler
Journal:  Opt Express       Date:  2010-07-05       Impact factor: 3.894

3.  Segmentation of intra-retinal layers from optical coherence tomography images using an active contour approach.

Authors:  Azadeh Yazdanpanah; Ghassan Hamarneh; Benjamin R Smith; Marinko V Sarunic
Journal:  IEEE Trans Med Imaging       Date:  2010-10-14       Impact factor: 10.048

4.  Quantitative thickness measurement of retinal layers imaged by optical coherence tomography.

Authors:  Mahnaz Shahidi; Zhangwei Wang; Ruth Zelkha
Journal:  Am J Ophthalmol       Date:  2005-06       Impact factor: 5.258

5.  Optimal surface segmentation in volumetric images--a graph-theoretic approach.

Authors:  Kang Li; Xiaodong Wu; Danny Z Chen; Milan Sonka
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-01       Impact factor: 6.226

6.  Automated segmentation of the macula by optical coherence tomography.

Authors:  Tapio Fabritius; Shuichi Makita; Masahiro Miura; Risto Myllylä; Yoshiaki Yasuno
Journal:  Opt Express       Date:  2009-08-31       Impact factor: 3.894

7.  Graph-based multi-surface segmentation of OCT data using trained hard and soft constraints.

Authors:  Pascal A Dufour; Lala Ceklic; Hannan Abdillahi; Simon Schröder; Sandro De Dzanet; Ute Wolf-Schnurrbusch; Jens Kowal
Journal:  IEEE Trans Med Imaging       Date:  2012-10-18       Impact factor: 10.048

8.  Proposed lexicon for anatomic landmarks in normal posterior segment spectral-domain optical coherence tomography: the IN•OCT consensus.

Authors:  Giovanni Staurenghi; Srinivas Sadda; Usha Chakravarthy; Richard F Spaide
Journal:  Ophthalmology       Date:  2014-04-19       Impact factor: 12.079

9.  Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation.

Authors:  Stephanie J Chiu; Xiao T Li; Peter Nicholas; Cynthia A Toth; Joseph A Izatt; Sina Farsiu
Journal:  Opt Express       Date:  2010-08-30       Impact factor: 3.894

10.  Quantitative analysis of retinal layers' optical intensities on 3D optical coherence tomography for central retinal artery occlusion.

Authors:  Haoyu Chen; Xinjian Chen; Zhiqiao Qiu; Dehui Xiang; Weiqi Chen; Fei Shi; Jianlong Zheng; Weifang Zhu; Milan Sonka
Journal:  Sci Rep       Date:  2015-03-18       Impact factor: 4.379

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  17 in total

1.  Fully Convolutional Boundary Regression for Retina OCT Segmentation.

Authors:  Yufan He; Aaron Carass; Yihao Liu; Bruno M Jedynak; Sharon D Solomon; Shiv Saidha; Peter A Calabresi; Jerry L Prince
Journal:  Med Image Comput Comput Assist Interv       Date:  2019-10-10

2.  ReLayNet: retinal layer and fluid segmentation of macular optical coherence tomography using fully convolutional networks.

Authors:  Abhijit Guha Roy; Sailesh Conjeti; Sri Phani Krishna Karri; Debdoot Sheet; Amin Katouzian; Christian Wachinger; Nassir Navab
Journal:  Biomed Opt Express       Date:  2017-07-13       Impact factor: 3.732

3.  Optical Coherence Tomography Segmentation Errors of the Retinal Nerve Fiber Layer Persist Over Time.

Authors:  Nisha Nagarkatti-Gude; Stuart K Gardiner; Brad Fortune; Shaban Demirel; Steven L Mansberger
Journal:  J Glaucoma       Date:  2019-05       Impact factor: 2.503

4.  Deep learning based topology guaranteed surface and MME segmentation of multiple sclerosis subjects from retinal OCT.

Authors:  Yufan He; Aaron Carass; Yihao Liu; Bruno M Jedynak; Sharon D Solomon; Shiv Saidha; Peter A Calabresi; Jerry L Prince
Journal:  Biomed Opt Express       Date:  2019-09-12       Impact factor: 3.732

Review 5.  The Role of Retinal Imaging and Portable Screening Devices in Tele-ophthalmology Applications for Diabetic Retinopathy Management.

Authors:  Delia Cabrera DeBuc
Journal:  Curr Diab Rep       Date:  2016-12       Impact factor: 4.810

6.  Automated Segmentation Errors When Using Optical Coherence Tomography to Measure Retinal Nerve Fiber Layer Thickness in Glaucoma.

Authors:  Steven L Mansberger; Shivali A Menda; Brad A Fortune; Stuart K Gardiner; Shaban Demirel
Journal:  Am J Ophthalmol       Date:  2016-11-04       Impact factor: 5.258

7.  Analysis of Agreement of Retinal-Layer Thickness Measures Derived from the Segmentation of Horizontal and Vertical Spectralis OCT Macular Scans.

Authors:  Natalia Gonzalez Caldito; Bhavna Antony; Yufan He; Andrew Lang; James Nguyen; Alissa Rothman; Esther Ogbuokiri; Ama Avornu; Laura Balcer; Elliot Frohman; Teresa C Frohman; Pavan Bhargava; Jerry Prince; Peter A Calabresi; Shiv Saidha
Journal:  Curr Eye Res       Date:  2017-12-14       Impact factor: 2.424

8.  In vivo Structural Assessments of Ocular Disease in Rodent Models using Optical Coherence Tomography.

Authors:  Rachael S Allen; Katie Bales; Andrew Feola; Machelle T Pardue
Journal:  J Vis Exp       Date:  2020-07-24       Impact factor: 1.355

9.  Statistical Models of Signal and Noise and Fundamental Limits of Segmentation Accuracy in Retinal Optical Coherence Tomography.

Authors:  Theodore B Dubose; David Cunefare; Elijah Cole; Peyman Milanfar; Joseph A Izatt; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2017-11-13       Impact factor: 10.048

10.  Structured layer surface segmentation for retina OCT using fully convolutional regression networks.

Authors:  Yufan He; Aaron Carass; Yihao Liu; Bruno M Jedynak; Sharon D Solomon; Shiv Saidha; Peter A Calabresi; Jerry L Prince
Journal:  Med Image Anal       Date:  2020-10-14       Impact factor: 8.545

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