| Literature DB >> 29988196 |
N Abattouy1, A Valero1, J Lozano1, S D Barón1,2, C Romero1, J Martín-Sánchez1.
Abstract
Genetic markers (ribosomal DNA and mitochondrial DNA) were used for molecular dissection of the Anisakis simplex sensu lato (s.l). complex populations. Host fish were caught off Moroccan coasts, where only Anisakis pegreffii is present, the sympatric area comprising Spanish coasts, and the Little Sole Bank fishing area from Nordeast Atlantic Ocean where the only present species is A. simplex sensu stricto(s.s.). Sequence variations in the amplification products were then assessed indirectly by digestion with restriction endonucleases or directly by sequencing for 623 L3 larvae. The sequences were used to infer the relationships between the two species under study using various methodological approaches. We reveal the high genetic diversity of Anisakis simplex s.s. and A. pegreffii in both mitochondrial and nuclear genes. We detected 10 and 2 fixed differences between A. simplex s.s and A. pegreffii in the Cox2 and ITS1, respectively. We found a proportion of putative hybrids below 20% with similar figures on the Atlantic and Mediterranean coasts. Moroccan hybrids were more similar to A. pegreffii reflecting backcrosses between these mixed genotypes and his ancestor A. pegreffii. We discuss the possible interpretation of these putative hybrids.Entities:
Keywords: Anisakis pegreffii; Anisakis simplex s.s.; Genetic diversity; Introgression; Putative hybrid genotypes
Year: 2016 PMID: 29988196 PMCID: PMC5991843 DOI: 10.1016/j.parepi.2016.02.003
Source DB: PubMed Journal: Parasite Epidemiol Control ISSN: 2405-6731
Fig. 1Map of the area showing the geographical distribution of the different capture locations and the relative proportions of A. simplex s.s., A. pegreffii and hybrids.
Geographical origin and host of the 38 L3 larvae for which a complete sequence of the ITS1–5,8S-ITS2 (ITS) and/or Cox2 fragment was obtained. Every larva was previously identified by PCR-RFLP as A. simplex s.s., A. pegreffii or hybrid genotype; n is the number of L3 identified.
| Species | Geographical origin | Host species | Markers | |
|---|---|---|---|---|
| 5 | Atlantic coast of Morocco | ITS | ||
| 1 | Atlantic coast of Morocco | ITS/ | ||
| 7 | Atlantic coast of Morocco | ITS | ||
| 2 | Mediterranean coast of Morocco | ITS | ||
| 1 | Mediterranean coast of Morocco | ITS | ||
| 1 | Mediterranean coast of Spain | ITS/ | ||
| 1 | Hybrid genotype | Atlantic coast of Morocco | ITS | |
| 1 | Mediterranean coast of Spain | ITS | ||
| 1 | Atlantic coast of Spain | ITS | ||
| 1 | Atlantic coast of Spain | ITS/ | ||
| 3 | Northeast Atlantic (Little Sole Bank) | ITS/ | ||
| 2 | Atlantic coast of Morocco | |||
| 2 | Atlantic coast of Morocco | |||
| 3 | Mediterranean coast of Morocco | |||
| 2 | Mediterranean coast of Morocco | |||
| 1 | Mediterranean coast of Spain | |||
| 2 | Atlantic coast of Spain | |||
| 1 | Northeast Atlantic (Little Sole Bank) | |||
| 1 | Hybrid genotype | Mediterranean coast of Spain |
Alignment of the polymorphic positions detected in the ribosomal haplotypes identified. According to the PCR-RFLP identification, rHP are haplotypes of A. pegreffii, rHS are haplotypes of A. simplex s.s., rHH is the hybrid genotype. (−) represents a deflection, Y = C/T, S = C/G.
| Positions | |||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Haplotypes | 0 | 0 | 1 | 1 | 1 | 1 | 2 | 2 | 2 | 2 | 2 | 2 | 3 | 4 | 4 | 5 | 6 | 6 | 6 | 7 | 7 | 8 | 8 |
| 0 | 3 | 4 | 6 | 7 | 7 | 5 | 5 | 7 | 9 | 9 | 9 | 0 | 2 | 6 | 7 | 0 | 0 | 4 | 0 | 4 | 0 | 2 | |
| 4 | 5 | 3 | 5 | 3 | 4 | 5 | 9 | 1 | 3 | 4 | 9 | 2 | 4 | 2 | 6 | 2 | 3 | 9 | 5 | 1 | 2 | 4 | |
| rHP1 | G | G | G | C | G | C | C | T | C | C | T | G | C | C | G | C | G | T | A | C | T | A | A |
| rHP2 | S | C | |||||||||||||||||||||
| rHP3 | C | T | C | C | |||||||||||||||||||
| rHP4 | T | ||||||||||||||||||||||
| rHP5 | A | ||||||||||||||||||||||
| rHP6 | C | C | |||||||||||||||||||||
| rHP7 | G | C | |||||||||||||||||||||
| rHP8 | C | T | T | T | G | G | C | ||||||||||||||||
| rHP9 | C | ||||||||||||||||||||||
| rHP10 | C | ||||||||||||||||||||||
| rHS11 | T | T | _ | ||||||||||||||||||||
| rHS12 | C | T | T | A | T | C | |||||||||||||||||
| rHS13 | T | T | A | C | |||||||||||||||||||
| rHS14 | T | T | C | ||||||||||||||||||||
| rHH15 | Y | Y | T | C | |||||||||||||||||||
Fig. 2Phenetic tree based on mtDNA Cox2 sequence data and obtained by distance analysis — F84 model with a neighbour-joining method of clustering. Anisakis typica is used as an outgroup. The numbers above the branches are bootstrap percentages (1000 replications) for clades supported above the 50% level.
Fig. 3Parsimony network based on rDNA ITS1–5,8S-ITS2 sequence data. The haplotype with the highest outgroup probability is displayed as a square, whilst other haplotypes are displayed as ovals. The size of the square or oval corresponds to the haplotype frequency.
Fig. 4Parsimony network based on mtDNA Cox2 sequence data. The haplotype with the highest outgroup probability is displayed as a square, whilst other haplotypes are displayed as ovals. The size of the square or oval corresponds to the haplotype frequency.