Literature DB >> 29983697

Synthetic Biology, Tinkering Biology, and Artificial Biology. What are We Learning?

Steven A Benner1, Zunyi Yang1, Fei Chen1.   

Abstract

While chemical theory cannot yet support an engineering vision that allows molecules, DNA sequences, and proteins to be interchangeable parts in artificial constructs without "tinkering", progress can be made in synthetic biology by pursuing challenges at the limits of existing theory. These force scientists across uncharted terrain where they must address unscripted problems where, if theory is inadequate, failure results. Thus, synthesis drives discovery and paradigm change in ways that analysis cannot. Further, if failures are analyzed, new theories emerge. Here, we illustrate this by synthesizing an artificial genetic system capable of Darwinian evolution, a feature theorized to be universal to life.

Entities:  

Keywords:  Mars exploration; Nucleic acids; biobricks; paleogenetics; philosophy of science; synthetic biology; tinkering

Year:  2010        PMID: 29983697      PMCID: PMC6034680          DOI: 10.1016/j.crci.2010.06.013

Source DB:  PubMed          Journal:  C R Chim        ISSN: 1631-0748            Impact factor:   3.117


  19 in total

Review 1.  Chemical etiology of nucleic acid structure.

Authors:  A Eschenmoser
Journal:  Science       Date:  1999-06-25       Impact factor: 47.728

2.  Ribosome-mediated incorporation of a non-standard amino acid into a peptide through expansion of the genetic code.

Authors:  J D Bain; C Switzer; A R Chamberlin; S A Benner
Journal:  Nature       Date:  1992-04-09       Impact factor: 49.962

3.  The case for an ancestral genetic system involving simple analogues of the nucleotides.

Authors:  G F Joyce; A W Schwartz; S L Miller; L E Orgel
Journal:  Proc Natl Acad Sci U S A       Date:  1987-07       Impact factor: 11.205

Review 4.  Tinkering with enzymes: what are we learning?

Authors:  J R Knowles
Journal:  Science       Date:  1987-06-05       Impact factor: 47.728

5.  Molecular computation of solutions to combinatorial problems.

Authors:  L M Adleman
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

6.  Carbonaceous meteorites as a source of sugar-related organic compounds for the early Earth.

Authors:  G Cooper; N Kimmich; W Belisle; J Sarinana; K Brabham; L Garrel
Journal:  Nature       Date:  2001 Dec 20-27       Impact factor: 49.962

Review 7.  Phosphates, DNA, and the search for nonterrean life: a second generation model for genetic molecules.

Authors:  Steven A Benner; Daniel Hutter
Journal:  Bioorg Chem       Date:  2002-02       Impact factor: 5.275

Review 8.  Is there a common chemical model for life in the universe?

Authors:  Steven A Benner; Alonso Ricardo; Matthew A Carrigan
Journal:  Curr Opin Chem Biol       Date:  2004-12       Impact factor: 8.822

9.  Oligonucleotide analogs with dimethylenesulfide, -sulfoxide, and -sulfone groups replacing phosphodiester linkages.

Authors:  Z Huang; K C Schneider; S A Benner
Journal:  Methods Mol Biol       Date:  1993

Review 10.  Synthetic biology.

Authors:  Steven A Benner; A Michael Sismour
Journal:  Nat Rev Genet       Date:  2005-07       Impact factor: 53.242

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  2 in total

Review 1.  Aesthetics in synthesis and synthetic biology.

Authors:  Steven A Benner
Journal:  Curr Opin Chem Biol       Date:  2012-11-27       Impact factor: 8.822

2.  7,8-Dihydro-8-oxo-1,N6-ethenoadenine: an exclusively Hoogsteen-paired thymine mimic in DNA that induces A→T transversions in Escherichia coli.

Authors:  Andrey V Aralov; Nina Gubina; Cristina Cabrero; Vladimir B Tsvetkov; Anton V Turaev; Bogdan I Fedeles; Robert G Croy; Ekaterina A Isaakova; Denis Melnik; Svetlana Dukova; Dmitriy Y Ryazantsev; Alexei A Khrulev; Anna M Varizhuk; Carlos González; Timofei S Zatsepin; John M Essigmann
Journal:  Nucleic Acids Res       Date:  2022-04-08       Impact factor: 16.971

  2 in total

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