Literature DB >> 29981746

Folding up and Moving on-Nascent Protein Folding on the Ribosome.

Christian M Kaiser1, Kaixian Liu2.   

Abstract

All cellular proteins are synthesized by the ribosome, an intricate molecular machine that translates the information of protein coding genes into the amino acid alphabet. The linear polypeptides synthesized by the ribosome must generally fold into specific three-dimensional structures to become biologically active. Folding has long been recognized to begin before synthesis is complete. Recently, biochemical and biophysical studies have shed light onto how the ribosome shapes the folding pathways of nascent proteins. Here, we discuss recent progress that is beginning to define the role of the ribosome in the folding of newly synthesized polypeptides.
Copyright © 2018 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  protein folding; ribosome; translation

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Year:  2018        PMID: 29981746      PMCID: PMC6384192          DOI: 10.1016/j.jmb.2018.06.050

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  87 in total

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Authors:  Markus Jahn; Johannes Buchner; Thorsten Hugel; Matthias Rief
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-19       Impact factor: 11.205

Review 2.  Translation regulation via nascent polypeptide-mediated ribosome stalling.

Authors:  Daniel N Wilson; Stefan Arenz; Roland Beckmann
Journal:  Curr Opin Struct Biol       Date:  2016-02-07       Impact factor: 6.809

3.  Pulse proteolysis: a simple method for quantitative determination of protein stability and ligand binding.

Authors:  Chiwook Park; Susan Marqusee
Journal:  Nat Methods       Date:  2005-02-17       Impact factor: 28.547

Review 4.  Arrest peptides: cis-acting modulators of translation.

Authors:  Koreaki Ito; Shinobu Chiba
Journal:  Annu Rev Biochem       Date:  2013       Impact factor: 23.643

Review 5.  The Yin and Yang of codon usage.

Authors:  Anton A Komar
Journal:  Hum Mol Genet       Date:  2016-06-27       Impact factor: 6.150

Review 6.  Insights into Cotranslational Nascent Protein Behavior from Computer Simulations.

Authors:  Fabio Trovato; Edward P O'Brien
Journal:  Annu Rev Biophys       Date:  2016-05-23       Impact factor: 12.981

Review 7.  Protein Folding: A Perspective from Theory and Experiment.

Authors:  Christopher M Dobson; Andrej Šali; Martin Karplus
Journal:  Angew Chem Int Ed Engl       Date:  1998-04-20       Impact factor: 15.336

Review 8.  Quality over quantity: optimizing co-translational protein folding with non-'optimal' synonymous codons.

Authors:  Giselle N Jacobson; Patricia L Clark
Journal:  Curr Opin Struct Biol       Date:  2016-06-16       Impact factor: 6.809

9.  Nascent peptide assists the ribosome in recognizing chemically distinct small molecules.

Authors:  Pulkit Gupta; Bo Liu; Dorota Klepacki; Vrinda Gupta; Klaus Schulten; Alexander S Mankin; Nora Vázquez-Laslop
Journal:  Nat Chem Biol       Date:  2016-01-04       Impact factor: 15.040

10.  The impact of ribosomal interference, codon usage, and exit tunnel interactions on translation elongation rate variation.

Authors:  Khanh Dao Duc; Yun S Song
Journal:  PLoS Genet       Date:  2018-01-16       Impact factor: 5.917

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  9 in total

Review 1.  The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis.

Authors:  Kevin C Stein; Judith Frydman
Journal:  J Biol Chem       Date:  2018-11-30       Impact factor: 5.157

2.  The Ribosome Cooperates with a Chaperone to Guide Multi-domain Protein Folding.

Authors:  Kaixian Liu; Kevin Maciuba; Christian M Kaiser
Journal:  Mol Cell       Date:  2019-03-06       Impact factor: 17.970

3.  Electrostatics of Prokaryotic Ribosome and Its Biological Implication.

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4.  Nascent Polypeptide Domain Topology and Elongation Rate Direct the Cotranslational Hierarchy of Hsp70 and TRiC/CCT.

Authors:  Kevin C Stein; Allison Kriel; Judith Frydman
Journal:  Mol Cell       Date:  2019-08-07       Impact factor: 17.970

5.  Co-translational folding of nascent polypeptides: Multi-layered mechanisms for the efficient biogenesis of functional proteins.

Authors:  Kevin Maciuba; Nandakumar Rajasekaran; Xiuqi Chen; Christian M Kaiser
Journal:  Bioessays       Date:  2021-05-13       Impact factor: 4.653

6.  Force transduction creates long-ranged coupling in ribosomes stalled by arrest peptides.

Authors:  Matthew H Zimmer; Michiel J M Niesen; Thomas F Miller
Journal:  Biophys J       Date:  2021-04-29       Impact factor: 3.699

7.  Energetic dependencies dictate folding mechanism in a complex protein.

Authors:  Kaixian Liu; Xiuqi Chen; Christian M Kaiser
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-27       Impact factor: 11.205

8.  GTPBP1 resolves paused ribosomes to maintain neuronal homeostasis.

Authors:  Markus Terrey; Scott I Adamson; Alana L Gibson; Tianda Deng; Ryuta Ishimura; Jeffrey H Chuang; Susan L Ackerman
Journal:  Elife       Date:  2020-11-13       Impact factor: 8.140

9.  Transcriptomic analysis of Procambarus clarkii affected by "Black May" disease.

Authors:  Guoqing Shen; Xiao Zhang; Jie Gong; Yang Wang; Pengdan Huang; Yan Shui; Zenghong Xu; Huaishun Shen
Journal:  Sci Rep       Date:  2020-12-04       Impact factor: 4.379

  9 in total

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