| Literature DB >> 29980710 |
Xiaofang Ma1, Lingling Fan1, Fuying Mao1,2, Yunsheng Zhao3,4,5, Yonggang Yan6, Hongling Tian7, Rui Xu1, Yanqun Peng1, Hong Sui1,2.
Abstract
Discrimination of species and geographical origins of traditional Chinese medicine (TCM) is essential to prevent adulteration and inferior problems. We studiedEntities:
Mesh:
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Year: 2018 PMID: 29980710 PMCID: PMC6035214 DOI: 10.1038/s41598-018-28558-9
Source DB: PubMed Journal: Sci Rep ISSN: 2045-2322 Impact factor: 4.379
Figure 1The element fingerprint common character of Ephedra samples. (A) Fingerprint character of elements average contents from three Ephedra species; (B) Elemental fingerprint character of E. sinica from 17 different origins; (C) Elemental fingerprint character of E. intermedia from 16 different origins. (D) Elemental fingerprint character of E. przewalskii from 5 different origins. The contents of several elements were narrowed or expanded to the same order of magnitude: Cu and Mo were expanded 100-fold; B and Zn were expanded ten fold; Ca, Mg, P, K, Fe, and S were reduced ten fold; and N was reduced 100-fold.
Figure 2Dendrograms of hierarchical cluster analysis (HCA) based on 15 elements for Ephedra samples. (A) Showed 38 samples of three Ephedra species; (B) showed E. sinica samples from 17 different origins; (C) showed E. intermedia samples from 16 different origins. S-NM: E. sinica samples from Inner Mongolia; S-NX: E. sinica samples from Ningxia; S-GS: E. sinica samples from GanSu; S-SX: E. sinica samples from ShanXi; S-SHX: E. sinica samples from ShaanXi; S-XJ: E. sinica samples from Sinkiang; I-NX: E. intermedia samples from Ningxia; I-GS: E. intermedia samples from GanSu; P-XJ: E. przewalskii samples from Sinkiang.
Figure 3A radar plot showing the difference in species and geographical origins of Ephedra samples based on six elements (B, N, P, K, Mg, and Fe). (A) Showed the elements average contents of E. sinica; (B) showed the elements average contents of E. intermedia; (C) showed the elements average contents of E. przewalskii; (D) showed the elements contents of E. sinica from 17 different origins; (E) showed the elements contents of E. intermedia from 16 different origins; (F) showed the elements contents of E. przewalskii from 5 different origins.
The vectors and cumulative contribution of variance of the first four principal components.
| Items | Principal component | |||
|---|---|---|---|---|
| 1 | 2 | 3 | 4 | |
| N | 0.851 | 0.357 | −0.143 | −0.088 |
| K | 0.816 | 0.307 | −0.207 | −0.058 |
| S | 0.342 | −0.716 | −0.005 | −0.002 |
| Ca | 0.733 | −0.422 | −0.097 | 0.154 |
| Mg | 0.040 | −0.197 | 0.569 | 0.745 |
| P | −0.038 | 0.851 | 0.202 | 0.165 |
| Fe | 0.661 | 0.187 | −0.464 | 0.421 |
| Cl | 0.835 | −0.241 | −0.194 | −0.047 |
| Sr | 0.799 | 0.081 | −0.305 | 0.357 |
| Na | 0.888 | −0.188 | 0.072 | −0.116 |
| B | 0.829 | 0.050 | 0.313 | −0.127 |
| Mn | 0.880 | −0.052 | −0.061 | −0.012 |
| Zn | 0.762 | −0.105 | 0.368 | −0.203 |
| Cu | 0.883 | 0.211 | 0.190 | −0.143 |
| Mo | 0.766 | 0.153 | 0.449 | −0.050 |
| Variance (%) | 53.452 | 12.633 | 8.423 | 6.786 |
| Cumulative variance (%) | 53.452 | 66.085 | 74.508 | 81.294 |
Figure 4Principal component analysis (PCA) based on 15 elements in Ephedra samples. Panel (A,B) illustrate the score plot and the corresponding loading plot of 38 Ephedra samples from different species. Grouping according to species was shown by principle components 1 and 2, which explained 53.45% and 12.63% of the variance, respectively.
Cumulative contribution of variance of the principal components.
| Component |
| Component |
| ||||
|---|---|---|---|---|---|---|---|
| Total | % of Variance | Cumulative % | Total | % of Variance | Cumulative % | ||
| 1 | 9.023 | 60.153 | 60.153 | 1 | 6.206 | 41.375 | 41.375 |
| 2 | 1.868 | 12.455 | 72.608 | 2 | 2.228 | 14.855 | 56.229 |
| 3 | 1.048 | 6.988 | 79.595 | 3 | 1.607 | 10.712 | 66.942 |
| 4 | 1.519 | 10.126 | 77.068 | ||||
| 5 | 1.106 | 7.374 | 84.442 | ||||
Figure 5Discrimination analysis for Ephedra samples from different species and regions (A) The discrimination of three species of Ephedra samples (E. intermedia, E. sinica, E. przewalskii); (B) Correlation chart between the selected variables and the discriminant functions for the 38 Ephedra samples; (C) The discrimination of E. sinica samples from different geographical regions; (D) Correlation chart between the selected variables and the discriminant functions for E. sinica samples.
Classification Results of Ephedra samples using discriminant analysis.
| Origin | Assigned species for | |||||||
|---|---|---|---|---|---|---|---|---|
|
|
|
| Total | Correct (%) | ||||
|
| 15 | 2 | 0 | 17 | 88.2 | |||
|
| 1 | 15 | 0 | 16 | 93.8 | |||
|
| 0 | 0 | 5 | 5 | 100.0 | |||
| Total | 16 | 17 | 5 | 38 | 92.1 | |||
| Origin | Assigned origin for | |||||||
| S-NM | S-NX | S-GS | S-SX | S-SHX | S-XJ | Total | Correct (%) | |
| S-NM | 4 | 0 | 0 | 0 | 0 | 0 | 4 | 100.0 |
| S-NX | 0 | 4 | 0 | 0 | 0 | 0 | 4 | 100.0 |
| S-GS | 0 | 0 | 3 | 0 | 0 | 0 | 3 | 100.0 |
| S-SX | 0 | 0 | 0 | 3 | 0 | 0 | 3 | 100.0 |
| S-SHX | 0 | 0 | 0 | 0 | 2 | 0 | 2 | 100.0 |
| S-XJ | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 100.0 |
| Total | 4 | 4 | 3 | 3 | 2 | 1 | 17 | 100.0 |
| Origin | Assigned species for | |||||||
| S-NX | S-GS | Total | Correct (%) | |||||
| S-NX | 3 | 0 | 3 | 100 | ||||
| S-GS | 0 | 13 | 13 | 100 | ||||
| Total | 3 | 13 | 16 | 100 | ||||