Literature DB >> 29976955

Tissue and exosomal miRNA editing in Non-Small Cell Lung Cancer.

Giovanni Nigita1, Rosario Distefano1, Dario Veneziano1, Giulia Romano2, Mohammad Rahman2, Kai Wang3, Harvey Pass4, Carlo M Croce1, Mario Acunzo5, Patrick Nana-Sinkam6.   

Abstract

RNA editing in microRNAs has been recently proposed as a novel biomarker in cancer. Here, we investigated RNA editing by leveraging small-RNA sequencing data from 87 NSCLC (Non-Small Cell Lung Cancer) samples paired with normal lung tissues from The Cancer Genome Atlas (TCGA) combined with 26 plasma-derived exosome samples from an independent cohort. Using both the editing levels and microRNA editing expression, we detected deregulated microRNA editing events between NSCLC tumor and normal tissues. Interestingly, and for the first time, we also detected editing sites in the microRNA cargo of circulating exosomes, providing the potential to non-invasively discriminate between normal and tumor samples. Of note, miR-411-5p edited in position 5 was significantly dysregulated in tissues as well as in exosomes of NSCLC patients, suggesting a potential targetome shift relevant to lung cancer biology.

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Year:  2018        PMID: 29976955      PMCID: PMC6033928          DOI: 10.1038/s41598-018-28528-1

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  38 in total

Review 1.  RNA editing by adenosine deaminases that act on RNA.

Authors:  Brenda L Bass
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

2.  The Genomic Landscape and Clinical Relevance of A-to-I RNA Editing in Human Cancers.

Authors:  Leng Han; Lixia Diao; Shuangxing Yu; Xiaoyan Xu; Jie Li; Rui Zhang; Yang Yang; Henrica M J Werner; A Karina Eterovic; Yuan Yuan; Jun Li; Nikitha Nair; Rosalba Minelli; Yiu Huen Tsang; Lydia W T Cheung; Kang Jin Jeong; Jason Roszik; Zhenlin Ju; Scott E Woodman; Yiling Lu; Kenneth L Scott; Jin Billy Li; Gordon B Mills; Han Liang
Journal:  Cancer Cell       Date:  2015-10-01       Impact factor: 31.743

Review 3.  Functions and regulation of RNA editing by ADAR deaminases.

Authors:  Kazuko Nishikura
Journal:  Annu Rev Biochem       Date:  2010       Impact factor: 23.643

4.  A comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness.

Authors:  A Maxwell Burroughs; Yoshinari Ando; Michiel J L de Hoon; Yasuhiro Tomaru; Takahiro Nishibu; Ryo Ukekawa; Taku Funakoshi; Tsutomu Kurokawa; Harukazu Suzuki; Yoshihide Hayashizaki; Carsten O Daub
Journal:  Genome Res       Date:  2010-08-18       Impact factor: 9.043

5.  Prediction of human targets for viral-encoded microRNAs by thermodynamics and empirical constraints.

Authors:  Alessandro Laganà; Stefano Forte; Francesco Russo; Rosalba Giugno; Alfredo Pulvirenti; Alfredo Ferro
Journal:  J RNAi Gene Silencing       Date:  2010-05-24

Review 6.  A-to-I editing of coding and non-coding RNAs by ADARs.

Authors:  Kazuko Nishikura
Journal:  Nat Rev Mol Cell Biol       Date:  2015-12-09       Impact factor: 94.444

7.  Human cancer tissues exhibit reduced A-to-I editing of miRNAs coupled with elevated editing of their targets.

Authors:  Yishay Pinto; Ilana Buchumenski; Erez Y Levanon; Eli Eisenberg
Journal:  Nucleic Acids Res       Date:  2018-01-09       Impact factor: 16.971

8.  Systematic identification of edited microRNAs in the human brain.

Authors:  Shahar Alon; Eyal Mor; Francois Vigneault; George M Church; Franco Locatelli; Federica Galeano; Angela Gallo; Noam Shomron; Eli Eisenberg
Journal:  Genome Res       Date:  2012-04-12       Impact factor: 9.043

9.  Gene amplification-associated overexpression of the RNA editing enzyme ADAR1 enhances human lung tumorigenesis.

Authors:  C Anadón; S Guil; L Simó-Riudalbas; C Moutinho; F Setien; A Martínez-Cardús; S Moran; A Villanueva; M Calaf; A Vidal; P A Lazo; I Zondervan; S Savola; T Kohno; J Yokota; L Ribas de Pouplana; M Esteller
Journal:  Oncogene       Date:  2016-06-27       Impact factor: 9.867

10.  miRBase: annotating high confidence microRNAs using deep sequencing data.

Authors:  Ana Kozomara; Sam Griffiths-Jones
Journal:  Nucleic Acids Res       Date:  2013-11-25       Impact factor: 16.971

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  17 in total

Review 1.  Extracellular vesicles and particles impact the systemic landscape of cancer.

Authors:  Serena Lucotti; Candia M Kenific; Haiying Zhang; David Lyden
Journal:  EMBO J       Date:  2022-09-02       Impact factor: 14.012

2.  Inhibitory effects of miR‑26b‑5p on thyroid cancer.

Authors:  Aiya Zhou; Gengyu Chen; Xiankui Cheng; Chi Zhang; Hao Xu; Ming Qi; Xiao Chen; Tiantian Wang; Leping Li
Journal:  Mol Med Rep       Date:  2019-05-31       Impact factor: 2.952

3.  Altered Biogenesis and MicroRNA Content of Hippocampal Exosomes Following Experimental Status Epilepticus.

Authors:  Aasia Batool; Thomas D M Hill; Ngoc T Nguyen; Elena Langa; Mairéad Diviney; Catherine Mooney; Gary P Brennan; Niamh M C Connolly; Amaya Sanz-Rodriguez; Brenton L Cavanagh; David C Henshall
Journal:  Front Neurosci       Date:  2020-01-17       Impact factor: 4.677

4.  Genome-Wide Characterization of RNA Editing Sites in Primary Gastric Adenocarcinoma through RNA-seq Data Analysis.

Authors:  Javad Behroozi; Shirin Shahbazi; Mohammad Reza Bakhtiarizadeh; Habibollah Mahmoodzadeh
Journal:  Int J Genomics       Date:  2020-12-18       Impact factor: 2.326

5.  Integrative analysis of long extracellular RNAs reveals a detection panel of noncoding RNAs for liver cancer.

Authors:  Yumin Zhu; Siqi Wang; Xiaochen Xi; Minfeng Zhang; Xiaofan Liu; Weina Tang; Peng Cai; Shaozhen Xing; Pengfei Bao; Yunfan Jin; Weihao Zhao; Yinghui Chen; Huanan Zhao; Xiaodong Jia; Shanshan Lu; Yinying Lu; Lei Chen; Jianhua Yin; Zhi John Lu
Journal:  Theranostics       Date:  2021-01-01       Impact factor: 11.556

Review 6.  Detecting and Characterizing A-To-I microRNA Editing in Cancer.

Authors:  Gioacchino P Marceca; Luisa Tomasello; Rosario Distefano; Mario Acunzo; Carlo M Croce; Giovanni Nigita
Journal:  Cancers (Basel)       Date:  2021-04-03       Impact factor: 6.639

7.  Diagnostic potential of extracellular vesicle-associated microRNA-10b and tumor markers for lung adenocarcinoma.

Authors:  Guangda Yuan; Hongya Xie; Tengteng Wei; Donglin Zhu; Chuanyu Zhang; Yong Yang
Journal:  Oncol Lett       Date:  2021-06-23       Impact factor: 2.967

8.  Circulating Small Noncoding RNAs Have Specific Expression Patterns in Plasma and Extracellular Vesicles in Myelodysplastic Syndromes and Are Predictive of Patient Outcome.

Authors:  Andrea Hrustincova; Zdenek Krejcik; David Kundrat; Katarina Szikszai; Monika Belickova; Pavla Pecherkova; Jiri Klema; Jitka Vesela; Monika Hruba; Jaroslav Cermak; Tereza Hrdinova; Matyas Krijt; Jan Valka; Anna Jonasova; Michaela Dostalova Merkerova
Journal:  Cells       Date:  2020-03-26       Impact factor: 6.600

Review 9.  Non-Coding RNAs in Lung Tumor Initiation and Progression.

Authors:  Ruben Mercado Santos; Cerena Moreno; Wen Cai Zhang
Journal:  Int J Mol Sci       Date:  2020-04-16       Impact factor: 6.208

Review 10.  Non-Coding RNA Editing in Cancer Pathogenesis.

Authors:  Giulia Romano; Michela Saviana; Patricia Le; Howard Li; Lavender Micalo; Giovanni Nigita; Mario Acunzo; Patrick Nana-Sinkam
Journal:  Cancers (Basel)       Date:  2020-07-08       Impact factor: 6.639

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