Literature DB >> 29976826

Ancient goat genomes reveal mosaic domestication in the Fertile Crescent.

Kevin G Daly1, Pierpaolo Maisano Delser1,2, Victoria E Mullin1,3, Amelie Scheu1,4, Valeria Mattiangeli1, Matthew D Teasdale1,5, Andrew J Hare1, Joachim Burger4, Marta Pereira Verdugo1, Matthew J Collins5,6, Ron Kehati7, Cevdet Merih Erek8, Guy Bar-Oz9, François Pompanon10, Tristan Cumer10, Canan Çakırlar11, Azadeh Fatemeh Mohaseb12,13, Delphine Decruyenaere12, Hossein Davoudi14,15, Özlem Çevik16, Gary Rollefson17, Jean-Denis Vigne12, Roya Khazaeli13, Homa Fathi13, Sanaz Beizaee Doost13, Roghayeh Rahimi Sorkhani18, Ali Akbar Vahdati19, Eberhard W Sauer20, Hossein Azizi Kharanaghi21, Sepideh Maziar22, Boris Gasparian23, Ron Pinhasi24, Louise Martin25, David Orton5, Benjamin S Arbuckle26, Norbert Benecke27, Andrea Manica2, Liora Kolska Horwitz7, Marjan Mashkour12,13,15, Daniel G Bradley28.   

Abstract

Current genetic data are equivocal as to whether goat domestication occurred multiple times or was a singular process. We generated genomic data from 83 ancient goats (51 with genome-wide coverage) from Paleolithic to Medieval contexts throughout the Near East. Our findings demonstrate that multiple divergent ancient wild goat sources were domesticated in a dispersed process that resulted in genetically and geographically distinct Neolithic goat populations, echoing contemporaneous human divergence across the region. These early goat populations contributed differently to modern goats in Asia, Africa, and Europe. We also detect early selection for pigmentation, stature, reproduction, milking, and response to dietary change, providing 8000-year-old evidence for human agency in molding genome variation within a partner species.
Copyright © 2018 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works.

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Year:  2018        PMID: 29976826     DOI: 10.1126/science.aas9411

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  29 in total

1.  Population genetics of wild Macaca fascicularis with low-coverage shotgun sequencing of museum specimens.

Authors:  Lu Yao; Kelsey Witt; Hongjie Li; Jonathan Rice; Nelson R Salinas; Robert D Martin; Emilia Huerta-Sánchez; Ripan S Malhi
Journal:  Am J Phys Anthropol       Date:  2020-07-08       Impact factor: 2.868

2.  Evidence for early dispersal of domestic sheep into Central Asia.

Authors:  William T T Taylor; Mélanie Pruvost; Cosimo Posth; William Rendu; Maciej T Krajcarz; Aida Abdykanova; Greta Brancaleoni; Robert Spengler; Taylor Hermes; Stéphanie Schiavinato; Gregory Hodgins; Raphaela Stahl; Jina Min; Saltanat Alisher Kyzy; Stanisław Fedorowicz; Ludovic Orlando; Katerina Douka; Andrey Krivoshapkin; Choongwon Jeong; Christina Warinner; Svetlana Shnaider
Journal:  Nat Hum Behav       Date:  2021-04-08

3.  The formation of human populations in South and Central Asia.

Authors:  Vagheesh M Narasimhan; Nick Patterson; Priya Moorjani; Nadin Rohland; Rebecca Bernardos; Swapan Mallick; Iosif Lazaridis; Nathan Nakatsuka; Iñigo Olalde; Mark Lipson; Alexander M Kim; Luca M Olivieri; Alfredo Coppa; Massimo Vidale; James Mallory; Vyacheslav Moiseyev; Egor Kitov; Janet Monge; Nicole Adamski; Neel Alex; Nasreen Broomandkhoshbacht; Francesca Candilio; Kimberly Callan; Olivia Cheronet; Brendan J Culleton; Matthew Ferry; Daniel Fernandes; Suzanne Freilich; Beatriz Gamarra; Daniel Gaudio; Mateja Hajdinjak; Éadaoin Harney; Thomas K Harper; Denise Keating; Ann Marie Lawson; Matthew Mah; Kirsten Mandl; Megan Michel; Mario Novak; Jonas Oppenheimer; Niraj Rai; Kendra Sirak; Viviane Slon; Kristin Stewardson; Fatma Zalzala; Zhao Zhang; Gaziz Akhatov; Anatoly N Bagashev; Alessandra Bagnera; Bauryzhan Baitanayev; Julio Bendezu-Sarmiento; Arman A Bissembaev; Gian Luca Bonora; Temirlan T Chargynov; Tatiana Chikisheva; Petr K Dashkovskiy; Anatoly Derevianko; Miroslav Dobeš; Katerina Douka; Nadezhda Dubova; Meiram N Duisengali; Dmitry Enshin; Andrey Epimakhov; Alexey V Fribus; Dorian Fuller; Alexander Goryachev; Andrey Gromov; Sergey P Grushin; Bryan Hanks; Margaret Judd; Erlan Kazizov; Aleksander Khokhlov; Aleksander P Krygin; Elena Kupriyanova; Pavel Kuznetsov; Donata Luiselli; Farhod Maksudov; Aslan M Mamedov; Talgat B Mamirov; Christopher Meiklejohn; Deborah C Merrett; Roberto Micheli; Oleg Mochalov; Samariddin Mustafokulov; Ayushi Nayak; Davide Pettener; Richard Potts; Dmitry Razhev; Marina Rykun; Stefania Sarno; Tatyana M Savenkova; Kulyan Sikhymbaeva; Sergey M Slepchenko; Oroz A Soltobaev; Nadezhda Stepanova; Svetlana Svyatko; Kubatbek Tabaldiev; Maria Teschler-Nicola; Alexey A Tishkin; Vitaly V Tkachev; Sergey Vasilyev; Petr Velemínský; Dmitriy Voyakin; Antonina Yermolayeva; Muhammad Zahir; Valery S Zubkov; Alisa Zubova; Vasant S Shinde; Carles Lalueza-Fox; Matthias Meyer; David Anthony; Nicole Boivin; Kumarasamy Thangaraj; Douglas J Kennett; Michael Frachetti; Ron Pinhasi; David Reich
Journal:  Science       Date:  2019-09-06       Impact factor: 47.728

4.  863 genomes reveal the origin and domestication of chicken.

Authors:  Ming-Shan Wang; Mukesh Thakur; Min-Sheng Peng; Yu Jiang; Laurent Alain François Frantz; Ming Li; Jin-Jin Zhang; Sheng Wang; Joris Peters; Newton Otieno Otecko; Chatmongkon Suwannapoom; Xing Guo; Zhu-Qing Zheng; Ali Esmailizadeh; Nalini Yasoda Hirimuthugoda; Hidayat Ashari; Sri Suladari; Moch Syamsul Arifin Zein; Szilvia Kusza; Saeed Sohrabi; Hamed Kharrati-Koopaee; Quan-Kuan Shen; Lin Zeng; Min-Min Yang; Ya-Jiang Wu; Xing-Yan Yang; Xue-Mei Lu; Xin-Zheng Jia; Qing-Hua Nie; Susan Joy Lamont; Emiliano Lasagna; Simone Ceccobelli; Humpita Gamaralalage Thilini Nisanka Gunwardana; Thilina Madusanka Senasige; Shao-Hong Feng; Jing-Fang Si; Hao Zhang; Jie-Qiong Jin; Ming-Li Li; Yan-Hu Liu; Hong-Man Chen; Cheng Ma; Shan-Shan Dai; Abul Kashem Fazlul Haque Bhuiyan; Muhammad Sajjad Khan; Gamamada Liyanage Lalanie Pradeepa Silva; Thi-Thuy Le; Okeyo Ally Mwai; Mohamed Nawaz Mohamed Ibrahim; Megan Supple; Beth Shapiro; Olivier Hanotte; Guojie Zhang; Greger Larson; Jian-Lin Han; Dong-Dong Wu; Ya-Ping Zhang
Journal:  Cell Res       Date:  2020-06-25       Impact factor: 25.617

5.  Distinguishing African bovids using Zooarchaeology by Mass Spectrometry (ZooMS): New peptide markers and insights into Iron Age economies in Zambia.

Authors:  Anneke Janzen; Kristine Korzow Richter; Ogeto Mwebi; Samantha Brown; Veronicah Onduso; Filia Gatwiri; Emmanuel Ndiema; Maggie Katongo; Steven T Goldstein; Katerina Douka; Nicole Boivin
Journal:  PLoS One       Date:  2021-05-18       Impact factor: 3.240

Review 6.  Animal domestication in the era of ancient genomics.

Authors:  Laurent A F Frantz; Daniel G Bradley; Greger Larson; Ludovic Orlando
Journal:  Nat Rev Genet       Date:  2020-04-07       Impact factor: 53.242

7.  A Hu sheep genome with the first ovine Y chromosome reveal introgression history after sheep domestication.

Authors:  Ran Li; Peng Yang; Ming Li; Wenwen Fang; Xiangpeng Yue; Hojjat Asadollahpour Nanaei; Shangquan Gan; Duo Du; Yudong Cai; Xuelei Dai; Qimeng Yang; Chunna Cao; Weidong Deng; Sangang He; Wenrong Li; Runlin Ma; Mingjun Liu; Yu Jiang
Journal:  Sci China Life Sci       Date:  2020-09-24       Impact factor: 6.038

8.  Origins and genetic legacy of prehistoric dogs.

Authors:  Anders Bergström; Laurent Frantz; Ryan Schmidt; Erik Ersmark; Ophelie Lebrasseur; Linus Girdland-Flink; Audrey T Lin; Jan Storå; Karl-Göran Sjögren; David Anthony; Ekaterina Antipina; Sarieh Amiri; Guy Bar-Oz; Vladimir I Bazaliiskii; Jelena Bulatović; Dorcas Brown; Alberto Carmagnini; Tom Davy; Sergey Fedorov; Ivana Fiore; Deirdre Fulton; Mietje Germonpré; James Haile; Evan K Irving-Pease; Alexandra Jamieson; Luc Janssens; Irina Kirillova; Liora Kolska Horwitz; Julka Kuzmanovic-Cvetković; Yaroslav Kuzmin; Robert J Losey; Daria Ložnjak Dizdar; Marjan Mashkour; Mario Novak; Vedat Onar; David Orton; Maja Pasarić; Miljana Radivojević; Dragana Rajković; Benjamin Roberts; Hannah Ryan; Mikhail Sablin; Fedor Shidlovskiy; Ivana Stojanović; Antonio Tagliacozzo; Katerina Trantalidou; Inga Ullén; Aritza Villaluenga; Paula Wapnish; Keith Dobney; Anders Götherström; Anna Linderholm; Love Dalén; Ron Pinhasi; Greger Larson; Pontus Skoglund
Journal:  Science       Date:  2020-10-29       Impact factor: 47.728

9.  Herded and hunted goat genomes from the dawn of domestication in the Zagros Mountains.

Authors:  Kevin G Daly; Valeria Mattiangeli; Andrew J Hare; Hossein Davoudi; Homa Fathi; Sanaz Beizaee Doost; Sarieh Amiri; Roya Khazaeli; Delphine Decruyenaere; Jebrael Nokandeh; Tobias Richter; Hojjat Darabi; Peder Mortensen; Alexis Pantos; Lisa Yeomans; Pernille Bangsgaard; Marjan Mashkour; Melinda A Zeder; Daniel G Bradley
Journal:  Proc Natl Acad Sci U S A       Date:  2021-06-22       Impact factor: 11.205

10.  The assembly of caprine Y chromosome sequence reveals a unique paternal phylogenetic pattern and improves our understanding of the origin of domestic goat.

Authors:  Changyi Xiao; Jingjin Li; Tanghui Xie; Jianhai Chen; Sijia Zhang; Salma Hassan Elaksher; Fan Jiang; Yaoxin Jiang; Lu Zhang; Wei Zhang; Yue Xiang; Zhenyang Wu; Shuhong Zhao; Xiaoyong Du
Journal:  Ecol Evol       Date:  2021-05-04       Impact factor: 2.912

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