Literature DB >> 29968061

Plant small RNAs: advancement in the understanding of biogenesis and role in plant development.

Archita Singh1, Vibhav Gautam1, Sharmila Singh1, Shabari Sarkar Das2, Swati Verma1, Vishnu Mishra1, Shalini Mukherjee1, Ananda K Sarkar3.   

Abstract

MAIN
CONCLUSION: Present review addresses the advances made in the understanding of biogenesis of plant small RNAs and their role in plant development. We discuss the elaborate role of microRNAs (miRNAs) and trans-acting small interfering RNAs (ta-siRNAs) in various aspects of plant growth and development and highlight relevance of small RNA mobility. Small non-coding RNAs regulate various aspects of plant development. Small RNAs (sRNAs) of 21-24 nucleotide length are derived from double-stranded RNAs through the combined activity of several biogenesis and processing components. These sRNAs function by negatively regulating the expression of target genes. miRNAs and ta-siRNAs constitute two important classes of endogenous small RNAs in plants, which play important roles in plant growth and developmental processes like embryogenesis, organ formation and patterning, shoot and root growth, and reproductive development. Biogenesis of miRNAs is a multistep process which includes transcription, processing and modification, and their loading onto RNA-induced silencing complex (RISC). RISC-loaded miRNAs carry out post-transcriptional silencing of their target(s). Recent studies identified orthologues of different biogenesis components of novel and conserved small RNAs from different model plants. Although many small RNAs have been identified from diverse plant species, only a handful of them have been functionally characterized. In this review, we discuss the advances made in understanding the biogenesis, functional conservation/divergence in miRNA-mediated gene regulation, and the developmental role of small RNAs in different plant species.

Entities:  

Keywords:  Plant development; Root development; Shoot development; Small RNA; miRNA; ta-siRNA

Mesh:

Substances:

Year:  2018        PMID: 29968061     DOI: 10.1007/s00425-018-2927-5

Source DB:  PubMed          Journal:  Planta        ISSN: 0032-0935            Impact factor:   4.116


  111 in total

1.  The miRNA156/157 recognition element in the 3' UTR of the Arabidopsis SBP box gene SPL3 prevents early flowering by translational inhibition in seedlings.

Authors:  Madhuri Gandikota; Rainer P Birkenbihl; Susanne Höhmann; Guillermo H Cardon; Heinz Saedler; Peter Huijser
Journal:  Plant J       Date:  2007-01-08       Impact factor: 6.417

2.  miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii.

Authors:  Attila Molnár; Frank Schwach; David J Studholme; Eva C Thuenemann; David C Baulcombe
Journal:  Nature       Date:  2007-05-30       Impact factor: 49.962

3.  Pattern formation via small RNA mobility.

Authors:  Daniel H Chitwood; Fabio T S Nogueira; Miya D Howell; Taiowa A Montgomery; James C Carrington; Marja C P Timmermans
Journal:  Genes Dev       Date:  2009-03-01       Impact factor: 11.361

Review 4.  Biogenesis of trans-acting siRNAs, endogenous secondary siRNAs in plants.

Authors:  Manabu Yoshikawa
Journal:  Genes Genet Syst       Date:  2013       Impact factor: 1.517

Review 5.  Signals and prepatterns: new insights into organ polarity in plants.

Authors:  Aman Y Husbands; Daniel H Chitwood; Yevgeniy Plavskin; Marja C P Timmermans
Journal:  Genes Dev       Date:  2009-09-01       Impact factor: 11.361

6.  Specification of leaf polarity in Arabidopsis via the trans-acting siRNA pathway.

Authors:  Damien Garcia; Sarah A Collier; Mary E Byrne; Robert A Martienssen
Journal:  Curr Biol       Date:  2006-05-09       Impact factor: 10.834

7.  Temporal regulation of shoot development in Arabidopsis thaliana by miR156 and its target SPL3.

Authors:  Gang Wu; R Scott Poethig
Journal:  Development       Date:  2006-08-16       Impact factor: 6.868

8.  MicroRNA directs mRNA cleavage of the transcription factor NAC1 to downregulate auxin signals for arabidopsis lateral root development.

Authors:  Hui-Shan Guo; Qi Xie; Ji-Feng Fei; Nam-Hai Chua
Journal:  Plant Cell       Date:  2005-04-13       Impact factor: 11.277

9.  The RNA-binding proteins HYL1 and SE promote accurate in vitro processing of pri-miRNA by DCL1.

Authors:  Zhicheng Dong; Meng-Hsuan Han; Nina Fedoroff
Journal:  Proc Natl Acad Sci U S A       Date:  2008-07-16       Impact factor: 11.205

10.  miR156 and miR390 regulate tasiRNA accumulation and developmental timing in Physcomitrella patens.

Authors:  Sung Hyun Cho; Ceyda Coruh; Michael J Axtell
Journal:  Plant Cell       Date:  2012-12-21       Impact factor: 11.277

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  29 in total

1.  Whole mount in situ localization of miRNAs and target mRNA transcripts in plants.

Authors:  Vibhav Gautam; Archita Singh; Swati Verma; Sharmila Singh; Sourav Chatterjee; Ananda K Sarkar
Journal:  3 Biotech       Date:  2019-04-29       Impact factor: 2.406

Review 2.  RNAi as a Foliar Spray: Efficiency and Challenges to Field Applications.

Authors:  Bao Tram L Hoang; Stephen J Fletcher; Christopher A Brosnan; Amol B Ghodke; Narelle Manzie; Neena Mitter
Journal:  Int J Mol Sci       Date:  2022-06-14       Impact factor: 6.208

Review 3.  The Mobile Small RNAs: Important Messengers for Long-Distance Communication in Plants.

Authors:  Yan Yan; Byung-Kook Ham
Journal:  Front Plant Sci       Date:  2022-06-17       Impact factor: 6.627

4.  Integrated analysis of miRNAs and their targets reveals that miR319c/TCP2 regulates apical bud burst in tea plant (Camellia sinensis).

Authors:  Shengrui Liu; Xiaozeng Mi; Ran Zhang; Yanlin An; Qiying Zhou; Tianyuan Yang; Xiaobo Xia; Rui Guo; Xuewen Wang; Chaoling Wei
Journal:  Planta       Date:  2019-06-06       Impact factor: 4.116

Review 5.  Regulation of small RNA-mediated high temperature stress responses in crop plants.

Authors:  Roshan Kumar Singh; Ashish Prasad; Jyoti Maurya; Manoj Prasad
Journal:  Plant Cell Rep       Date:  2021-07-06       Impact factor: 4.570

Review 6.  Exogenous RNAs for Gene Regulation and Plant Resistance.

Authors:  Alexandra S Dubrovina; Konstantin V Kiselev
Journal:  Int J Mol Sci       Date:  2019-05-08       Impact factor: 5.923

Review 7.  Small RNA Mobility: Spread of RNA Silencing Effectors and its Effect on Developmental Processes and Stress Adaptation in Plants.

Authors:  Chiara Pagliarani; Giorgio Gambino
Journal:  Int J Mol Sci       Date:  2019-09-03       Impact factor: 5.923

8.  The nearly complete genome of Ginkgo biloba illuminates gymnosperm evolution.

Authors:  Hailin Liu; Xiaobo Wang; Guibin Wang; Peng Cui; Shigang Wu; Cheng Ai; Nan Hu; Alun Li; Bing He; Xiujuan Shao; Zhichao Wu; Hu Feng; Yuxiao Chang; Desheng Mu; Jing Hou; Xiaogang Dai; Tongming Yin; Jue Ruan; Fuliang Cao
Journal:  Nat Plants       Date:  2021-06-14       Impact factor: 15.793

9.  Identification of microRNAs and their targets in inflorescences of an Ogura-type cytoplasmic male-sterile line and its maintainer fertile line of turnip (Brassica rapa ssp. rapifera) via high-throughput sequencing and degradome analysis.

Authors:  Sue Lin; Shiwen Su; Libo Jin; Renyi Peng; Da Sun; Hao Ji; Youjian Yu; Jian Xu
Journal:  PLoS One       Date:  2020-07-30       Impact factor: 3.240

10.  Identification and characterization of miRNAs associated with sterile flower buds in the tea plant based on small RNA sequencing.

Authors:  Hao Qu; Yue Liu; Huibing Jiang; Yufei Liu; Weixi Song; Linbo Chen
Journal:  Hereditas       Date:  2021-07-16       Impact factor: 3.271

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