Literature DB >> 29967128

Extracellular vesicles in DLBCL provide abundant clues to aberrant transcriptional programming and genomic alterations.

Sarah C Rutherford1, Angela A Fachel1, Sheng Li2, Seema Sawh1, Ashlesha Muley1, Jennifer Ishii3, Ashish Saxena1, Pilar M Dominguez1, Eloisi Caldas Lopes1, Xabier Agirre4, Nyasha Chambwe5, Fabian Correa6, Yanwen Jiang1, Kristy L Richards1, Doron Betel1,7, Rita Shaknovich1,8.   

Abstract

The biological role of extracellular vesicles (EVs) in diffuse large B-cell lymphoma (DLBCL) initiation and progression remains largely unknown. We characterized EVs secreted by 5 DLBCL cell lines, a primary DLBCL tumor, and a normal control B-cell sample, optimized their purification, and analyzed their content. We found that DLBCLs secreted large quantities of CD63, Alix, TSG101, and CD81 EVs, which can be extracted using an ultracentrifugation-based method and traced by their cell of origin surface markers. We also showed that tumor-derived EVs can be exchanged between lymphoma cells, normal tonsillar cells, and HK stromal cells. We then examined the content of EVs, focusing on isolation of high-quality total RNA. We sequenced the total RNA and analyzed the nature of RNA species, including coding and noncoding RNAs. We compared whole-cell and EV-derived RNA composition in benign and malignant B cells and discovered that transcripts from EVs were involved in many critical cellular functions. Finally, we performed mutational analysis and found that mutations detected in EVs exquisitely represented mutations in the cell of origin. These results enhance our understanding and enable future studies of the role that EVs may play in the pathogenesis of DLBCL, particularly with regards to the exchange of genomic information. Current findings open a new strategy for liquid biopsy approaches in disease monitoring.
© 2018 by The American Society of Hematology.

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Year:  2018        PMID: 29967128      PMCID: PMC6265635          DOI: 10.1182/blood-2017-12-821843

Source DB:  PubMed          Journal:  Blood        ISSN: 0006-4971            Impact factor:   22.113


  37 in total

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Journal:  Blood       Date:  2015-04-01       Impact factor: 22.113

2.  Variability in DNA methylation defines novel epigenetic subgroups of DLBCL associated with different clinical outcomes.

Authors:  Nyasha Chambwe; Matthias Kormaksson; Huimin Geng; Subhajyoti De; Franziska Michor; Nathalie A Johnson; Ryan D Morin; David W Scott; Lucy A Godley; Randy D Gascoyne; Ari Melnick; Fabien Campagne; Rita Shaknovich
Journal:  Blood       Date:  2014-01-02       Impact factor: 22.113

3.  Expression of B-cell surface antigens in subpopulations of exosomes released from B-cell lymphoma cells.

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Journal:  Clin Ther       Date:  2014-06-01       Impact factor: 3.393

4.  Caspase-3-dependent cleavage of Bcl-xL in the stroma exosomes is required for their uptake by hematological malignant cells.

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Journal:  Blood       Date:  2016-10-14       Impact factor: 22.113

5.  Circulating melanoma exosomes as diagnostic and prognosis biomarkers.

Authors:  Estibaliz Alegre; Leyre Zubiri; Jose Luis Perez-Gracia; María González-Cao; Lourdes Soria; Salvador Martín-Algarra; Alvaro González
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6.  Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response.

Authors:  Stefano Monti; Kerry J Savage; Jeffery L Kutok; Friedrich Feuerhake; Paul Kurtin; Martin Mihm; Bingyan Wu; Laura Pasqualucci; Donna Neuberg; Ricardo C T Aguiar; Paola Dal Cin; Christine Ladd; Geraldine S Pinkus; Gilles Salles; Nancy Lee Harris; Riccardo Dalla-Favera; Thomas M Habermann; Jon C Aster; Todd R Golub; Margaret A Shipp
Journal:  Blood       Date:  2004-11-18       Impact factor: 22.113

7.  Salvage regimens with autologous transplantation for relapsed large B-cell lymphoma in the rituximab era.

Authors:  Christian Gisselbrecht; Bertram Glass; Nicolas Mounier; Devinder Singh Gill; David C Linch; Marek Trneny; Andre Bosly; Nicolas Ketterer; Ofer Shpilberg; Hans Hagberg; David Ma; Josette Brière; Craig H Moskowitz; Norbert Schmitz
Journal:  J Clin Oncol       Date:  2010-07-26       Impact factor: 44.544

8.  Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.

Authors:  Hadi Valadi; Karin Ekström; Apostolos Bossios; Margareta Sjöstrand; James J Lee; Jan O Lötvall
Journal:  Nat Cell Biol       Date:  2007-05-07       Impact factor: 28.824

9.  UpSet: Visualization of Intersecting Sets.

Authors:  Alexander Lex; Nils Gehlenborg; Hendrik Strobelt; Romain Vuillemot; Hanspeter Pfister
Journal:  IEEE Trans Vis Comput Graph       Date:  2014-12       Impact factor: 4.579

10.  RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.

Authors:  Bo Li; Colin N Dewey
Journal:  BMC Bioinformatics       Date:  2011-08-04       Impact factor: 3.307

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  10 in total

1.  Clinical significance of circulating exosomal PD-L1 and soluble PD-L1 in extranodal NK/T-cell lymphoma, nasal-type.

Authors:  Ji-Wei Li; Ping Wei; Ye Guo; Di Shi; Bao-Hua Yu; Yi-Fan Su; Xiao-Qiu Li; Xiao-Yan Zhou
Journal:  Am J Cancer Res       Date:  2020-12-01       Impact factor: 6.166

2.  CD20 expression, TrkB activation and functional activity of diffuse large B cell lymphoma-derived small extracellular vesicles.

Authors:  Danielle Troutaud; Hafidha Bentayeb; Marine Aitamer; Hussein Akil; Chantal Vignoles; Maud Branchaud; Julie Abraham; Nathalie Gachard; Jean Feuillard; Marie-Odile Jauberteau; Hamasseh Shirvani
Journal:  Br J Cancer       Date:  2021-11-06       Impact factor: 7.640

3.  Lymphoma cell-derived extracellular vesicles inhibit autophagy and apoptosis to promote lymphoma cell growth via the microRNA-106a/Beclin1 axis.

Authors:  Junling Tang; Peng Hu; Shixia Zhou; Tiejun Zhou; Xiaoming Li; Li Zhang
Journal:  Cell Cycle       Date:  2022-03-13       Impact factor: 5.173

Review 4.  Personalized medicine: From diagnostic to adaptive.

Authors:  Zachary V Braig
Journal:  Biomed J       Date:  2019-07-09       Impact factor: 7.892

5.  Hypoxia-elicited mesenchymal stem cell-derived exosomes facilitates cardiac repair through miR-125b-mediated prevention of cell death in myocardial infarction.

Authors:  Ling-Ping Zhu; Tian Tian; Jun-Yao Wang; Jing-Ni He; Tong Chen; Miao Pan; Li Xu; Hui-Xin Zhang; Xue-Ting Qiu; Chuan-Chang Li; Kang-Kai Wang; Hong Shen; Guo-Gang Zhang; Yong-Ping Bai
Journal:  Theranostics       Date:  2018-11-29       Impact factor: 11.556

Review 6.  Circulating RNA biomarkers in diffuse large B-cell lymphoma: a systematic review.

Authors:  Philippe Decruyenaere; Fritz Offner; Jo Vandesompele
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7.  Universal extracellular vesicles and PD-L1+ extracellular vesicles detected by single molecule array technology as circulating biomarkers for diffuse large B cell lymphoma.

Authors:  Ji-Wei Li; Di Shi; Xiao-Chun Wan; Jue Hu; Yi-Fan Su; Yu-Peng Zeng; Zi-Juan Hu; Bao-Hua Yu; Qun-Ling Zhang; Ping Wei; Xiao-Yan Zhou
Journal:  Oncoimmunology       Date:  2021-10-29       Impact factor: 8.110

8.  Proteomic Landscape of Extracellular Vesicles for Diffuse Large B-Cell Lymphoma Subtyping.

Authors:  Ana Sofia Carvalho; Henrique Baeta; Andreia F A Henriques; Mostafa Ejtehadifar; Erin M Tranfield; Ana Laura Sousa; Ana Farinho; Bruno Costa Silva; José Cabeçadas; Paula Gameiro; Maria Gomes da Silva; Hans Christian Beck; Rune Matthiesen
Journal:  Int J Mol Sci       Date:  2021-10-12       Impact factor: 5.923

9.  Clinical relevance of serum-derived exosomal messenger RNA sequencing in patients with non-Hodgkin lymphoma.

Authors:  Yeong Hak Bang; Joon Ho Shim; Kyung Ju Ryu; Yeon Jeong Kim; Myung Eun Choi; Sang Eun Yoon; Junhun Cho; Bon Park; Woong-Yang Park; Won Seog Kim; Seok Jin Kim
Journal:  J Cancer       Date:  2022-02-21       Impact factor: 4.207

10.  Investigation of canine extracellular vesicles in diffuse large B-cell lymphomas.

Authors:  Marek Kulka; Kieran Brennan; Margaret Mc Gee
Journal:  PLoS One       Date:  2022-09-20       Impact factor: 3.752

  10 in total

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