| Literature DB >> 29961674 |
Xiaoyi Zhang1, Xiaoyan Wang2, Jian Wu2, Juan Peng2, Xin Deng2, Yi Shen1, Chunjie Yang2, Jie Yuan3, Yunzeng Zou3.
Abstract
Few studies have compared the performances of those reported miRNAs as biomarkers for hypertension in a same cohort, we aimed to comprehensively examine the performances of those reported miRNAs as biomarkers for hypertension and identify the genes and pathways targetted by these miRNAs. Serum samples were collected from patients hospitalized for hypertension in Zhongshan Hospital. Gene expressions of 25 miRNAs were compared between hypertension and normal groups. Receiver operating characteristic (ROC) curves were used to evaluate the accuracy of those miRNAs as biomarkers for hypertension. miRWALK2.0 and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were performed to predict the target genes and pathways of selected miRNAs. A total of 164 participants were enrolled, amongst which 53 were patients with hypertension, 111 were normal population. MiR-122-5p (area under curve (AUC): 0.750), miR-199a-3p (AUC: 0.744), miR-208a-3p (AUC: 0.743), miR-423-5p (AUC: 0.740), and miR-223-5p (AUC: 0.718) showed better performance than others, and the best performance was the combination of miR-199a-3p, miR-208a-3p, miR-122-5p, and miR-223-3p (AUC: 0.80). Pathway analysis revealed that 94 pathways enriched with genes targetted by miR-199a-3p, miR-208a-3p, miR-122-5p, miR-223-5p FoxO signaling was enriched with genes targetted by all the three miRNAs (miR-199a-3p, miR-208a-3p, miR-122-5p). The combination of miR-199a-3p, miR-208a-3p, miR-122-5p, and miR-223-3p has a good diagnostic performance for hypertension, and multitudes of possible mechanisms/pathways through which dysregulation of these miRNAs may impact risk of hypertension.Entities:
Keywords: KEGG analysis; biomarkers; hypertension
Mesh:
Substances:
Year: 2018 PMID: 29961674 PMCID: PMC6147777 DOI: 10.1042/BSR20180525
Source DB: PubMed Journal: Biosci Rep ISSN: 0144-8463 Impact factor: 3.840
Characteristics of the enrolled individuals
| Index | Hypertension | Control | |
|---|---|---|---|
| Male gender, | 37 (69.8%) | 82 (73.9%) | 0.581 |
| SBP | 132.17 ± 13.29 | 115.70 ± 15.50 | <0.001 |
| Age | 64.43 ± 9.60 | 46.29 ± 9.09 | <0.001 |
| α2-macroglobulin | 1.62 (1.40–2.22) | 1.55 (1.23–1.76) | 0.006 |
| β2-microglobulin | 1.99 (1.70–2.51) | 1.62 (1.41–1.86) | <0.001 |
| HB | 133.17 ± 13.40 | 146.14 ± 18.38 | <0.001 |
| WBC | 6.12 ± 1.41 | 6.44 ± 1.66 | 0.228 |
| GFR | 79.66 ± 20.70 | 91.82 ± 15.99 | <0.001 |
| TC | 5.09 ± 0.83 | 4.41 ± 1.05 | <0.001 |
| HDL | 1.22 ± 0.28 | 1.44 ± 0.37 | 0.001 |
Abbreviations: GFR, glomerular filtration rate; HB, hemoglobin; HDL, high-density lipoprotein; SBP, systolic blood pressure; TC, triglyceride; WBC, white blood cell.
The correlation of levels of miRNAs with hypertension
| MiRNA | RQ | Pearson correlation | |
|---|---|---|---|
| 1-5p | 0.582 | 0.132 | 0.094 |
| 133a-3p | 0.406 | 0.175 | 0.031 |
| 23a-5p | 0.544 | 0.140 | 0.124 |
| 199a-3p | 0.403 | 0.293 | <0.001 |
| 20b-3p | 1.964 | −0.136 | 0.111 |
| 155-5p | 0.559 | 0.141 | 0.084 |
| 195-5p | 0.716 | 0.094 | 0.231 |
| 21-5p | 0.511 | 0.193 | 0.013 |
| 320a | 0.782 | 0.073 | 0.376 |
| 1-3p | 0.316 | 0.276 | 0.001 |
| 208a-3p | 0.280 | 0.299 | <0.001 |
| 423-5p | 0.372 | 0.299 | <0.001 |
| 106b-5p | 0.940 | 0.015 | 0.852 |
| 21-3p | 0.706 | 0.090 | 0.291 |
| 23a-3p | 0.542 | 0.153 | 0.053 |
| 126-5p | 0.578 | 0.138 | 0.107 |
| 133b | 0.595 | 0.096 | 0.235 |
| 675-3p | 2.035 | −0.193 | 0.020 |
| 223-3p | 0.194 | 0.337 | <0.001 |
| Let-7i-5p | 0.768 | 0.066 | 0.479 |
| 208b | 1.024 | −0.005 | 0.952 |
| 19b-3p | 1.253 | −0.064 | 0.952 |
| 122-5p | 0.194 | 0.368 | <0.001 |
| 18b-5p | 4.562 | −0.259 | 0.001 |
| 20b-5p | 6.057 | −0.306 | 0.001 |
| 548c-3p | 7.109 | −0.231 | 0.007 |
| 499a-5p | 7.838 | −0.244 | 0.005 |
Figue 12ΔΔCt of the selected miRNAs
Figure 2ROC curve for the first four miRNAs which have a good prediction ability for hypertension
Figure 3The predictive value of the combination of miR-199a-3p, miR-208a-3p, miR-122-5p, and miR-223-3p
Correlation of the selected miRNAs with the biochemical indexes
| Indicator | miRNA | Pearson correlation | |
|---|---|---|---|
| BNP | 0.231 | 0.004 | |
| −0.266 | 0.003 | ||
| −0.207 | 0.016 | ||
| −0.261 | 0.002 | ||
| cTNT | 0.238 | 0.003 | |
| −0.169 | 0.033 | ||
| −0.328 | <0.001 | ||
| −0.175 | 0.042 | ||
| −0.208 | 0.016 | ||
| LVEF | −0.212 | 0.007 | |
| 0.219 | 0.015 | ||
| 0.189 | 0.028 |
Figure 4GO and KEGG analysis for the four candidate miRNAs
(A) Venn’s diagram of genes targetted by each of the four candidate miRNAs. (B) Venn’s diagram of pathways enriched with genes targetted by the four candidate miRNAs with P<0.05. Pathways related to cancer were eliminated.
KEGG pathways enriched by genes targetted by the four candidate miRNAs (P<0.05)
| miRNA(s) | KEGG pathways | Target genes | Target genes | Target genes | Target genes | ||||
|---|---|---|---|---|---|---|---|---|---|
| All four miRNAs | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| Glioma | 5 | 0.0014 | — | — | 7 | 0.017 | 5 | 0.014 | |
| FoxO signaling pathway | 8 | <6.0 × 10−5 | 4 | 0.016 | 10 | 0.027 | — | — | |
| Epstein–Barr virus infection | 7 | 0.003 | 4 | 0.04 | — | — | — | — | |
| Focal adhesion | 14 | <3.0 × 10−6 | — | — | — | — | 8 | 0.03 | |
| Pathways in cancer | 15 | <8.0 × 10−7 | 12 | 0.009 | |||||
| Melanoma | 7 | <2.0 × 10−5 | 6 | 0.004 | |||||
| Prostate cancer | 5 | 0.004 | 6 | 0.010 | |||||
| Endocytosis | 6 | 0.04 | 8 | 0.020 | |||||
| Proteoglycans in cancer | 12 | 2.0 × 10−9 | — | — | 14 | 0.01 | — | — | |
| Renal cell carcinoma | 6 | 1.2 × 10−4 | 8 | 0.004 | |||||
| Pancreatic cancer | 6 | 1.2 × 10−4 | 9 | 0.001 | |||||
| Sphingolipid signaling pathway | 7 | 2.6 × 10−4 | 10 | 0.01 | |||||
| Osteoclast differentiation | 7 | 4.2 × 10−4 | 12 | 0.003 | |||||
| Central carbon metabolism in cancer | 5 | <0.002 | 7 | 0.02 | |||||
| Toxoplasmosis | 6 | <0.002 | 9 | 0.03 | |||||
| Choline metabolism in cancer | 5 | 0.07 | 8 | 0.04 | |||||
| Insulin resistance | 5 | 0.009 | 10 | 0.007 | |||||
| Colorectal cancer | 4 | 0.01 | 8 | 0.004 | |||||
| Neurotrophin signaling pathway | 5 | 0.01 | 9 | 0.04 | |||||
| Epithelial cell signaling in | 4 | 0.01 | 7 | 0.02 | |||||
| Pertussis | 4 | 0.01 | 7 | 0.03 | |||||
| Insulin signaling pathway | 5 | 0.02 | 11 | 0.01 | |||||
| Hepatitis B | 5 | 0.02 | 10 | 0.04 | |||||
| Tuberculosis | 5 | 0.04 | 15 | 0.002 | |||||
Levels of delta ct of microRNAs between normal group and hypertension group