Literature DB >> 29960350

Machine learning of molecular properties: Locality and active learning.

Konstantin Gubaev1, Evgeny V Podryabinkin1, Alexander V Shapeev1.   

Abstract

In recent years, the machine learning techniques have shown great potent1ial in various problems from a multitude of disciplines, including materials design and drug discovery. The high computational speed on the one hand and the accuracy comparable to that of density functional theory on another hand make machine learning algorithms efficient for high-throughput screening through chemical and configurational space. However, the machine learning algorithms available in the literature require large training datasets to reach the chemical accuracy and also show large errors for the so-called outliers-the out-of-sample molecules, not well-represented in the training set. In the present paper, we propose a new machine learning algorithm for predicting molecular properties that addresses these two issues: it is based on a local model of interatomic interactions providing high accuracy when trained on relatively small training sets and an active learning algorithm of optimally choosing the training set that significantly reduces the errors for the outliers. We compare our model to the other state-of-the-art algorithms from the literature on the widely used benchmark tests.

Year:  2018        PMID: 29960350     DOI: 10.1063/1.5005095

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

Review 1.  Bottom-up Coarse-Graining: Principles and Perspectives.

Authors:  Jaehyeok Jin; Alexander J Pak; Aleksander E P Durumeric; Timothy D Loose; Gregory A Voth
Journal:  J Chem Theory Comput       Date:  2022-09-07       Impact factor: 6.578

2.  New Strategies for Direct Methane-to-Methanol Conversion from Active Learning Exploration of 16 Million Catalysts.

Authors:  Aditya Nandy; Chenru Duan; Conrad Goffinet; Heather J Kulik
Journal:  JACS Au       Date:  2022-04-27

Review 3.  Ab Initio Machine Learning in Chemical Compound Space.

Authors:  Bing Huang; O Anatole von Lilienfeld
Journal:  Chem Rev       Date:  2021-08-13       Impact factor: 60.622

4.  Transferable Machine-Learning Model of the Electron Density.

Authors:  Andrea Grisafi; Alberto Fabrizio; Benjamin Meyer; David M Wilkins; Clemence Corminboeuf; Michele Ceriotti
Journal:  ACS Cent Sci       Date:  2018-12-26       Impact factor: 14.553

5.  Li5Sn, the Most Lithium-Rich Binary Stannide: A Combined Experimental and Computational Study.

Authors:  Robert U Stelzer; Yuji Ikeda; Prashanth Srinivasan; Tanja S Lehmann; Blazej Grabowski; Rainer Niewa
Journal:  J Am Chem Soc       Date:  2022-04-13       Impact factor: 16.383

6.  Implementing Critical Machine Learning (ML) Approaches for Generating Robust Discriminative Neuroimaging Representations Using Structural Equation Model (SEM).

Authors:  Mohammed Rashad Baker; D Lakshmi Padmaja; R Puviarasi; Suman Mann; Jeidy Panduro-Ramirez; Mohit Tiwari; Issah Abubakari Samori
Journal:  Comput Math Methods Med       Date:  2022-04-14       Impact factor: 2.809

7.  A quantitative uncertainty metric controls error in neural network-driven chemical discovery.

Authors:  Jon Paul Janet; Chenru Duan; Tzuhsiung Yang; Aditya Nandy; Heather J Kulik
Journal:  Chem Sci       Date:  2019-07-11       Impact factor: 9.825

8.  Automated discovery of a robust interatomic potential for aluminum.

Authors:  Justin S Smith; Benjamin Nebgen; Nithin Mathew; Jie Chen; Nicholas Lubbers; Leonid Burakovsky; Sergei Tretiak; Hai Ah Nam; Timothy Germann; Saryu Fensin; Kipton Barros
Journal:  Nat Commun       Date:  2021-02-23       Impact factor: 14.919

  8 in total

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