Literature DB >> 29959131

High Throughput Sequencing and Assessing Disease Risk.

Shannon M Rego1, Michael P Snyder1.   

Abstract

High-throughput sequencing has dramatically improved our ability to determine and diagnose the underlying causes of human disease. The use of whole-genome and whole-exome sequencing has facilitated faster and more cost-effective identification of new genes implicated in Mendelian disease. It has also improved our ability to identify disease-causing mutations for Mendelian diseases whose associated genes are already known. These benefits apply not only in cases in which the objective is to assess genetic disease risk in adults and children, but also for prenatal genetic testing and embryonic testing. High-throughput sequencing has also impacted our ability to assess risk for complex diseases and will likely continue to influence this area of disease research as more and more individuals undergo sequencing and we better understand the significance of variation, both rare and common, across the genome. Through these activities, high-throughput sequencing has the potential to revolutionize medicine.
Copyright © 2019 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2019        PMID: 29959131      PMCID: PMC6314070          DOI: 10.1101/cshperspect.a026849

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Med        ISSN: 2157-1422            Impact factor:   6.915


  11 in total

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Authors:  Jessica X Chong; Kati J Buckingham; Shalini N Jhangiani; Corinne Boehm; Nara Sobreira; Joshua D Smith; Tanya M Harrell; Margaret J McMillin; Wojciech Wiszniewski; Tomasz Gambin; Zeynep H Coban Akdemir; Kimberly Doheny; Alan F Scott; Dimitri Avramopoulos; Aravinda Chakravarti; Julie Hoover-Fong; Debra Mathews; P Dane Witmer; Hua Ling; Kurt Hetrick; Lee Watkins; Karynne E Patterson; Frederic Reinier; Elizabeth Blue; Donna Muzny; Martin Kircher; Kaya Bilguvar; Francesc López-Giráldez; V Reid Sutton; Holly K Tabor; Suzanne M Leal; Murat Gunel; Shrikant Mane; Richard A Gibbs; Eric Boerwinkle; Ada Hamosh; Jay Shendure; James R Lupski; Richard P Lifton; David Valle; Deborah A Nickerson; Michael J Bamshad
Journal:  Am J Hum Genet       Date:  2015-07-09       Impact factor: 11.025

Review 2.  The impact of next-generation sequencing technology on preimplantation genetic diagnosis and screening.

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Journal:  Fertil Steril       Date:  2013-03-15       Impact factor: 7.329

3.  Prenatal whole-genome sequencing--is the quest to know a fetus's future ethical?

Authors:  Ilana R Yurkiewicz; Bruce R Korf; Lisa Soleymani Lehmann
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Review 4.  What does next-generation sequencing mean for prenatal diagnosis?

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5.  Heritability of type II (non-insulin-dependent) diabetes mellitus and abnormal glucose tolerance--a population-based twin study.

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6.  Cancer risk estimates for BRCA1 mutation carriers identified in a risk evaluation program.

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Journal:  J Natl Cancer Inst       Date:  2002-09-18       Impact factor: 13.506

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Journal:  Pediatrics       Date:  2003-12       Impact factor: 7.124

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Authors:  Yanqin You; Yan Sun; Xuchao Li; Yali Li; Xiaoming Wei; Fang Chen; Huijuan Ge; Zhangzhang Lan; Qian Zhu; Ying Tang; Shujuan Wang; Ya Gao; Fuman Jiang; Jiaping Song; Quan Shi; Xuan Zhu; Feng Mu; Wei Dong; Vince Gao; Hui Jiang; Xin Yi; Wei Wang; Zhiying Gao
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9.  Non-invasive prenatal measurement of the fetal genome.

Authors:  H Christina Fan; Wei Gu; Jianbin Wang; Yair J Blumenfeld; Yasser Y El-Sayed; Stephen R Quake
Journal:  Nature       Date:  2012-07-19       Impact factor: 49.962

10.  A prospective evaluation of whole-exome sequencing as a first-tier molecular test in infants with suspected monogenic disorders.

Authors:  Zornitza Stark; Tiong Y Tan; Belinda Chong; Gemma R Brett; Patrick Yap; Maie Walsh; Alison Yeung; Heidi Peters; Dylan Mordaunt; Shannon Cowie; David J Amor; Ravi Savarirayan; George McGillivray; Lilian Downie; Paul G Ekert; Christiane Theda; Paul A James; Joy Yaplito-Lee; Monique M Ryan; Richard J Leventer; Emma Creed; Ivan Macciocca; Katrina M Bell; Alicia Oshlack; Simon Sadedin; Peter Georgeson; Charlotte Anderson; Natalie Thorne; Clara Gaff; Susan M White
Journal:  Genet Med       Date:  2016-03-03       Impact factor: 8.822

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  11 in total

1.  Smash++: an alignment-free and memory-efficient tool to find genomic rearrangements.

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2.  Bioinformatics prediction and experimental verification of key biomarkers for diabetic kidney disease based on transcriptome sequencing in mice.

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3.  Pancreatic adenocarcinoma associated immune-gene signature as a novo risk factor for clinical prognosis prediction in hepatocellular carcinoma.

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Review 4.  Genome sequencing guide: An introductory toolbox to whole-genome analysis methods.

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5.  A Single-Center Follow-Up Study of Low-Grade Gastric Intraepithelial Neoplasia and the Screening of Key Genes of Precancerous Lesions.

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Review 6.  Development and application of sensitive, specific, and rapid CRISPR-Cas13-based diagnosis.

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7.  Prenatal diagnosis of chromosome 18 long arm deletion syndrome by high-throughput sequencing: Two case reports.

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8.  Prognostic and Clinicopathological Value of ZWINT Expression Levels in Patients with Lung Adenocarcinoma: A Systematic Review and Meta-analysis.

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Review 9.  Emerging Evidence for the Widespread Role of Glutamatergic Dysfunction in Neuropsychiatric Diseases.

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10.  Identification of the Potential Gene Regulatory Networks and Therapeutics in Aged Mice With Postoperative Neurocognitive Disorder.

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Journal:  Front Neurosci       Date:  2021-06-24       Impact factor: 4.677

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