Literature DB >> 29951569

Guanine Nucleotide Exchange Assay Using Fluorescent MANT-GDP.

Tomoharu Kanie1, Peter K Jackson1.   

Abstract

GTPases are molecular switches that cycle between the inactive GDP-bound state and the active GTP-bound state. GTPases exchange nucleotides either by its intrinsic nucleotide exchange or by interaction with guanine nucleotide exchange factors (GEFs). Monitoring the nucleotide exchange in vitro, together with reconstitution of direct interactions with regulatory proteins, provides key insights into how a GTPase is activated. In this protocol, we describe core methods to monitor nucleotide exchange using fluorescent N-Methylanthraniloyl (MANT)-guanine nucleotide.

Entities:  

Keywords:  Fluorescence; Fluorescent GDP; Fluorescent nucleotides; GEF assay; GTPase; N-Methylanthraniloyl (MANT); Nucleotide exchange; in vitro

Year:  2018        PMID: 29951569      PMCID: PMC6017992          DOI: 10.21769/BioProtoc.2795

Source DB:  PubMed          Journal:  Bio Protoc        ISSN: 2331-8325


  14 in total

1.  Small-molecule ligands bind to a distinct pocket in Ras and inhibit SOS-mediated nucleotide exchange activity.

Authors:  Till Maurer; Lindsay S Garrenton; Angela Oh; Keith Pitts; Daniel J Anderson; Nicholas J Skelton; Benjamin P Fauber; Borlan Pan; Shiva Malek; David Stokoe; Mary J C Ludlam; Krista K Bowman; Jiansheng Wu; Anthony M Giannetti; Melissa A Starovasnik; Ira Mellman; Peter K Jackson; Joachim Rudolph; Weiru Wang; Guowei Fang
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-19       Impact factor: 11.205

2.  Kinetics of interaction of nucleotides with nucleotide-free H-ras p21.

Authors:  J John; R Sohmen; J Feuerstein; R Linke; A Wittinghofer; R S Goody
Journal:  Biochemistry       Date:  1990-06-26       Impact factor: 3.162

Review 3.  GEFs and GAPs: critical elements in the control of small G proteins.

Authors:  Johannes L Bos; Holger Rehmann; Alfred Wittinghofer
Journal:  Cell       Date:  2007-06-01       Impact factor: 41.582

4.  In vitro GEF and GAP assays.

Authors:  Alexander Eberth; Mohammad Reza Ahmadian
Journal:  Curr Protoc Cell Biol       Date:  2009-06

5.  Crystal structures at 2.2 A resolution of the catalytic domains of normal ras protein and an oncogenic mutant complexed with GDP.

Authors:  L A Tong; A M de Vos; M V Milburn; S H Kim
Journal:  J Mol Biol       Date:  1991-02-05       Impact factor: 5.469

6.  Crystal structure of the intraflagellar transport complex 25/27.

Authors:  Sagar Bhogaraju; Michael Taschner; Michaela Morawetz; Claire Basquin; Esben Lorentzen
Journal:  EMBO J       Date:  2011-04-19       Impact factor: 11.598

7.  The CEP19-RABL2 GTPase Complex Binds IFT-B to Initiate Intraflagellar Transport at the Ciliary Base.

Authors:  Tomoharu Kanie; Keene Louis Abbott; Nancie Ann Mooney; Edward Douglas Plowey; Janos Demeter; Peter Kent Jackson
Journal:  Dev Cell       Date:  2017-06-15       Impact factor: 12.270

Review 8.  The guanine nucleotide-binding switch in three dimensions.

Authors:  I R Vetter; A Wittinghofer
Journal:  Science       Date:  2001-11-09       Impact factor: 47.728

9.  Refined crystal structure of the triphosphate conformation of H-ras p21 at 1.35 A resolution: implications for the mechanism of GTP hydrolysis.

Authors:  E F Pai; U Krengel; G A Petsko; R S Goody; W Kabsch; A Wittinghofer
Journal:  EMBO J       Date:  1990-08       Impact factor: 11.598

10.  A role for the vesicle-associated tubulin binding protein ARL6 (BBS3) in flagellum extension in Trypanosoma brucei.

Authors:  Helen P Price; Michael R Hodgkinson; Megan H Wright; Edward W Tate; Barbara A Smith; Mark Carrington; Meg Stark; Deborah F Smith
Journal:  Biochim Biophys Acta       Date:  2012-05-15
View more
  11 in total

1.  Double inhibition and activation mechanisms of Ephexin family RhoGEFs.

Authors:  Meng Zhang; Lin Lin; Chao Wang; Jinwei Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-23       Impact factor: 11.205

2.  Insight into human Miro1/2 domain organization based on the structure of its N-terminal GTPase.

Authors:  Kyle P Smith; Pamela J Focia; Srinivas Chakravarthy; Eric C Landahl; Julian L Klosowiak; Sarah E Rice; Douglas M Freymann
Journal:  J Struct Biol       Date:  2020-10-24       Impact factor: 2.867

3.  L-type prostaglandin D synthase regulates the trafficking of the PGD2 DP1 receptor by interacting with the GTPase Rab4.

Authors:  Chantal Binda; Samuel Génier; Jade Degrandmaison; Samuel Picard; Louis Fréchette; Steve Jean; Eric Marsault; Jean-Luc Parent
Journal:  J Biol Chem       Date:  2019-10-01       Impact factor: 5.157

4.  Benzothiourea Derivatives Target the Secretory Pathway of the Human Fungal Pathogen Cryptococcus neoformans.

Authors:  Sarah R Beattie; Nicholas J Schnicker; Thomas Murante; Kavitha Kettimuthu; Noelle S Williams; Lokesh Gakhar; Damian J Krysan
Journal:  ACS Infect Dis       Date:  2020-02-26       Impact factor: 5.084

5.  A Mant-GDP Dissociation Assay to Compare the Guanine Nucleotide Binding Preference of Small GTPases.

Authors:  Yuping Tan; Qingxiang Sun
Journal:  Bio Protoc       Date:  2021-01-20

6.  Protocol for structural and biochemical analyses of RhoA GTPase.

Authors:  Yuan Lin; Miki Watanabe-Chailland; Yi Zheng
Journal:  STAR Protoc       Date:  2021-05-14

7.  A single class of ARF GTPase activated by several pathway-specific ARF-GEFs regulates essential membrane traffic in Arabidopsis.

Authors:  Manoj K Singh; Sandra Richter; Hauke Beckmann; Marika Kientz; York-Dieter Stierhof; Nadine Anders; Florian Fäßler; Michael Nielsen; Christian Knöll; Alexis Thomann; Mirita Franz-Wachtel; Boris Macek; Karen Skriver; Peter Pimpl; Gerd Jürgens
Journal:  PLoS Genet       Date:  2018-11-15       Impact factor: 5.917

8.  Structures of N-terminally processed KRAS provide insight into the role of N-acetylation.

Authors:  Srisathiyanarayanan Dharmaiah; Timothy H Tran; Simon Messing; Constance Agamasu; William K Gillette; Wupeng Yan; Timothy Waybright; Patrick Alexander; Dominic Esposito; Dwight V Nissley; Frank McCormick; Andrew G Stephen; Dhirendra K Simanshu
Journal:  Sci Rep       Date:  2019-07-19       Impact factor: 4.379

9.  Novel Tools towards Magnetic Guidance of Neurite Growth: (I) Guidance of Magnetic Nanoparticles into Neurite Extensions of Induced Human Neurons and In Vitro Functionalization with RAS Regulating Proteins.

Authors:  Hendrik Schöneborn; Fabian Raudzus; Emilie Secret; Nils Otten; Aude Michel; Jérome Fresnais; Christine Ménager; Jean-Michel Siaugue; Holm Zaehres; Irmgard D Dietzel; Rolf Heumann
Journal:  J Funct Biomater       Date:  2019-07-16

10.  The nucleoporin Nup50 activates the Ran guanine nucleotide exchange factor RCC1 to promote NPC assembly at the end of mitosis.

Authors:  Guillaume Holzer; Paola De Magistris; Cathrin Gramminger; Ruchika Sachdev; Adriana Magalska; Allana Schooley; Anja Scheufen; Birgitt Lennartz; Marianna Tatarek-Nossol; Hongqi Lue; Monika I Linder; Ulrike Kutay; Christian Preisinger; Daniel Moreno-Andres; Wolfram Antonin
Journal:  EMBO J       Date:  2021-11-02       Impact factor: 11.598

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.