Literature DB >> 29951242

Crystal structures of 4,4'-(disulfane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one) and 4,4'-(diselanane-1,2-diyl)bis(5-methyl-2H-1,3-dithiol-2-one).

Ivan Trentin1, Claudia Schindler1, Carola Schulzke1.   

Abstract

The two title compounds, C8H6O2S6 and C8H6O2S4Se2, are isotypic with very similar cell parameters. The complete mol-ecules constitute the asymmetric units, despite being chemically perfectly symmetric. The most prominant differences in the metrical parameters arise from the distinct sizes of sulfur and selenium in the dichalcogenide bridges, with C-S-S-C and C-Se-Se-C torsion angles of 70.70 (5) and 68.88 (3)°, respectively. The crystal packing is determined by weak non-classical hydrogen-bonding inter-actions. One carbonyl oxygen but not the other participates in C-H⋯O inter-actions zigzagging along the b axis, forming infinite chains. This is complemented by an intra-molecular C-H⋯S inter-action and further inter-molecular C-H⋯S (C-H⋯Se) inter-actions, resulting in a three-dimensional network. The inter-actions involving the bridging chalcogenides form chains protruding along the c axis.

Entities:  

Keywords:  1,3-ene-di­thiol-2-ones; catenation; crystal structure; diselenide; di­sulfide

Year:  2018        PMID: 29951242      PMCID: PMC6002816          DOI: 10.1107/S2056989018007454

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Selenium- and sulfur-containing compounds play an important role in nature. Sulfur-rich compounds, in particular derivatives of tetra­thia­fulvalene and di­thiol­ene, comprise chemically inter­esting compounds with exceptional electronic structural characteristics. Selenium is an essential trace element in the active sites of several enzymes and plays inter alia an important role in anti­oxidant seleno­proteins for protection against oxidative stress such as in thio­redoxin reductase (Lee et al., 1999 ▸; Lescure et al., 1999 ▸; Mustacich & Powis, 2000 ▸; Watabe et al., 1999 ▸; Williams et al., 2000 ▸). In the di­sulfide isomerase protein family, thio­redoxin-like domains are rich in cysteine residues. A diselenide from seleno­cysteins was shown to be structurally very similar to the respective di­sulfide from two cysteins (Görbitz et al., 2015 ▸). As a consequence, di­sulfide and diselenide compounds were developed as catalysts for oxidative protein folding and refolding reactions (Arai et al., 2018 ▸). Here we report the serendipitous synthesis and structural characterization of bis­[3-methyl-1,3-ene-di­thiol-2-one] di­sulfide and bis­[3-methyl-1,3-ene-di­thiol-2-one] diselenide via unprecedented routes. Instead of the targeted products, the applied order of reactions yielded the novel di­sulfide and its diselenide analogue, which have potential applications in redox chemistry and as biologically inter­esting compounds. By in situ oxidation, S—S or SeSe moieties are formed, replac­ing the Bu3Sn substituents of alkene carbon atoms of two distinct and consequently linked 1,3-ene-di­thiol-2-one units. As this constitutes a substitution of a Bu3Sn functional group, it is quite likely that this method can be applied to a variety of respective different precursors.

Structural commentary

The two title compounds are isotypic. One complete mol­ecule constitutes the asymmetric unit despite being chemically perfectly symmetric: i.e. no symmetry operation is used to generate the whole mol­ecular structure. In both compounds, two 3-methyl-1,3-ene-di­thiol-2-one moieties are linked by a dichalcogenide bridge (S2 2− or Se2 2−), which is attached to one of the ene carbon atoms, while the other ene carbon is bound to a methyl group (Figs. 1 ▸ and 2 ▸). Both structures constitute the first examples of crystallographically characterized di­sulfides and diselenides in which two 1,3-ene-di­thiol-2-one moieties are linked by a dichalcogenide bridge. While related bridged 1,3-ene-di­thiol-2-thione moieties are reported for di­sulfides and also one compound in which the di­sulfide is part of a heterocycle with the 1,3-ene-di­thiol-2-one moiety (Chou et al., 1998 ▸), no such analogues are known in the case of the diselenide bridge.
Figure 1

The mol­ecular structure of bis­[4-methyl-1,3-ene-di­thiol-2-one] di­sulfide. Displacement ellipsoids are shown at the 50% probability level.

Figure 2

The mol­ecular structure of [bis­[4-methyl-1,3-ene-di­thiol-2-one] diselenide. Displacement ellipsoids are shown at the 50% probability level.

The metrical parameters of both mol­ecules are nearly identical (see Fig. 3 ▸ for an overlay of the mol­ecules), with the largest differences found for the dichalcogenide bridge itself. The SeSe distance [2.3397 (7) Å] is longer by ca 0.27 Å than the S—S distance [2.0723 (7) Å], matching almost exactly the difference in the respective covalent radii (0.13 Å; Pyykkö & Atsumi, 2009 ▸) multiplied by two. Similarly, the average C—Se distance [1.897 (4) Å] is longer by 0.15 Å than the average C—S distance [1.749 (2) Å]. Unusual electronic effects upon exchanging selenium for sulfur can, hence, be excluded. The average C—SeSe angle [98.8 (6)°] is slightly more acute than the C—S—S angle [101.8 (6)°], which necessarily results from the longer distances involving the Se atom and the nearly identical atom positions of the 1,3-ene-di­thiol-2-thione moieties. All other differences in the metrical parameters between the two mol­ecular structures are marginal. All observed distances and angles also fall into or close to the expected/previously reported ranges. The S—S distances of the most closely related compounds range from 2.078 Å in an Fe(CO)2Cp-coordinating species (Matsubayashi et al., 2002 ▸) to 2.160 Å in the [C6S10]2− dianion crystallized as an ammonium salt (Breitzer et al., 2001 ▸). The observed S—S distance [S3—S4; 2.0723 (7) Å] here is slightly shorter than the former, though not shorter than the lower limit of ca 2.00 Å when generally evaluating C—S—S—C linkages (Comerlato et al., 2010 ▸; Aida & Nagata, 1986 ▸). SeSe distances in compounds in which one Se2 2− unit binds to alkene carbon atoms and bridges two identical ene-moieties range from 2.303 Å (Biswas et al., 2017 ▸) to 2.389 Å (Ruban et al., 1981 ▸), with the SeSe distance observed here [2.3397 (7) Å] falling right in the center of this range.
Figure 3

An overlay (Mercury; Macrae et al., 2006 ▸) of the mol­ecular structures of bis­[4-methyl-1,3-ene-di­thiol-2-one] di­sulfide (yellow bridge) and bis­[4-methyl-1,3-ene-di­thiol-2-one] diselenide (orange bridge). The root-mean-square deviation (r.m.s.d.) and the maximum distance between atom positions are 0.078 and 0.171 Å, respectively.

The structurally most notable features are the C—S—S—C and C—SeSe—C torsion angles [70.70 (5) and 68.86 (3)°, respectively] which bring the two 1,3-ene-di­thiol-2-thione moieties in rather close proximity. In related di­sulfides they range from 52.08 to 109.82° (Breitzer et al., 2001 ▸). C—S—S—C torsion angles near 90° were found in silico to stabilize structures by an overlap of one σ*S—C orbital with the 3p lone pair of the other sulfur atom, which is maximized in such an arrangement (Aida & Nagata, 1986 ▸). The observed C—SeSe—C torsion angles of diselenide-bridged alkenes as the closest relatives of the title diselenide range from 73.03° (Ruban et al., 1981 ▸) to 92.04° (Biswas et al., 2017 ▸). In the crystalline solid state, apparently packing effects, steric bulk, hydrogen-bonding inter­actions, and π–π-stacking can influence the relative orientations of the two substituents on the di­sulfide unit significantly, whereas the values for alkene bridging diselenides observed to date are less varied. The four 1,3-ene-di­thiol-2-one moieties (two in each structure) are essentially planar, with maximum deviations from the least-squares plane of 0.028 and 0.022 Å for the di­sulfide and for the diselenide, respectively, corresponding to the distances from atom S1 to the O1—S1—S2—C1—C2—C3 plane in both cases. The dihedral angles between the O1—S1—S2—C1—C2—C3 and the O2—S5—S6—C6—C7—C8 planes are 33.8 (2)° for the di­sulfide and 28.89 (11)° for the diselenide. Here, a smaller torsion angle around the dichalcogenide bridge is accompanied by a smaller angle between the two planes of the 1,3-ene-di­thiol-2-one moieties.

Supra­molecular features

In the crystals, mol­ecules are linked by C—H⋯O, C—H⋯S, and C—H⋯Se non-classical hydrogen-bonding inter­actions, some of which being comparably weak (Tables 1 ▸ and 2 ▸). One carbonyl oxygen but not the other participates in C4—H4B⋯O1i inter­actions zigzagging along the b axis, forming infinite chains (Fig. 4 ▸, left). The respective D⋯A distances are 3.345 (2) Å for the disufide and 3.369 (5) Å for the diselenide. This is complemented by two intra­molecular inter­actions between the two chalcogens of the dichalcogenide bridges and the adjacent methyl substituents (C4—H4A⋯S3/Se1 and C5—H5A⋯S4/Se2) with D⋯A distances of 3.244 (2) for S3, of 3.234 (2) for S4, of 3.354 (4) for Se1, and of 3.341 (4) for Se2. Further inter­molecular C—H⋯S and C—H⋯Se inter­actions contribute to the formation of a three-dimensional network. The inter­actions involving the bridging chalcogenides form chains protruding along the c axis (Fig. 4 ▸, center and right). The closest 3-methyl-1,3-ene-di­thiol-2-one moieties of two adjacent mol­ecules are perfectly coplanar with the carbonyl oxygen atoms pointing into opposite directions. The respective distances between the planes are 3.55 and 3.58 Å for pairs of S1—S2—C1—C2—C3 heterocycles for the di­sulfide and diselenide, and 3.64 and 3.66 Å for pairs of S5—S6—C6—C7—C8 heterocycles. This arrangement fosters weak symmetric bidirectional C5—H5C⋯S5iii and C4—H4C⋯S2iv hydrogen-bonding inter­actions between methyl hydrogen atoms and S2 and S5 ring atoms, connecting adjacent chains and forming a three-dimensional network (Fig. 4 ▸, right).
Table 1

Hydrogen-bond geometry (Å, °) for C8H6O2S6

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4A⋯S30.982.763.244 (2)111
C5—H5A⋯S40.982.753.234 (2)111
C4—H4B⋯O1i 0.982.533.345 (2)141
C5—H5C⋯S3ii 0.983.143.8063 (19)126
C5—H5C⋯S5iii 0.983.013.825 (2)142
C4—H4C⋯S2iv 0.983.124.021 (2)153

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Table 2

Hydrogen-bond geometry (Å, °) for C8H6O2S4Se2

D—H⋯A D—HH⋯A DA D—H⋯A
C4—H4A⋯Se10.982.843.354 (4)114
C5—H5A⋯Se20.982.833.341 (4)114
C4—H4B⋯O1i 0.982.553.369 (5)141
C5—H5C⋯Se1ii 0.983.143.801 (4)126
C5—H5C⋯S5iii 0.983.043.850 (4)141
C4—H4C⋯S2iv 0.983.133.992 (4)148

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Figure 4

Packing and non-classical hydrogen-bonding motifs for the crystal structures of bis­[4-methyl-1,3-ene-di­thiol-2-one] di­sulfide and bis­[4-methyl-1,3-ene-di­thiol-2-one] diselenide. Left: C4—H4B⋯O1i inter­actions zigzagging along the b axis shown for the diselenide; center: hydrogen-bonding inter­actions of the diselenide bridge C5—H5C⋯Se1ii protruding along the c axis; right: additional symmetric hydrogen-bonding inter­actions between coplanar 1,3-ene-di­thiol-2-one moieties connecting adjacent chains shown for the di­sulfide (C4—H4C⋯S2iv and C5—H5C⋯S5iii). For symmetry codes, see Tables 1 ▸ and 2 ▸.

Database survey

In the literature to date, only S—S-bridged 1,3-ene-di­thiol-2-thione compounds have been reported but no analogous 1,3-ene-di­thiol-2-one compounds (excluding those in which the ‘link’ is part of a heterocycle). The first such thione crystal structure was reported in 1999 by Cerrada et al., which comprises an S—S-linked [C3S5—C3S5]2− dianion (Cerrada et al., 1999 ▸). Ten years later, Cerrada et al. described the S—S coupling via di­thiol­ate transfer from tin to nickel complexes where they isolated an S—S-bridged 1,3-di­thiol-2-thione with different substituents as a crystalline byproduct (Cerrada et al., 2009 ▸). Rauchfuss and co-workers described the isolation and structural characterization of an S—S-linked dianion [C6S10]2− as the tetra­methyl­ammonium salt (Breitzer et al., 2001 ▸). In 2002, Matsubayashi et al. reported the formation of an S—S-linked [C3S5—C3S5]2− system bridging two Fe(CO)2Cp complexes by coordination of thiol­ate sulfur to iron (Matsubayashi et al., 2002 ▸). Wardell and coworkers carried out the controlled oxidation of cesium 4-benzoyl­thio-1,3-di­thiole-2-thione-5-thiol­ate using iodine as oxidant and obtained bis­(4-benzoyl­thio-1,3-di­thiole-2-thione)-5,5-di­sulfide, in two polymorphic forms (Comerlato et al., 2010 ▸). Recently the formation of a di­sulfide with a 4-(methyl­sulfan­yl)-2H-1,3-di­thiole-2-thione unit was reported from the reaction of a Cs complex with MCl2 (M = Pt, Pd) by Kumar et al. (2017 ▸). Notably, such compounds predominantly constitute unanti­cipated side products and the focus of the respective characterization lies in crystallographic analyses with respect to solid-state inter­molecular inter­actions and packing motifs. More in-depth studies have focused predominatly on their inter­esting redox properties (Breitzer et al., 2001 ▸; Matsubayashi et al., 2002 ▸). Only two analogous diselenide compounds with SeSe moieties linking two 1,3-ene-di­thiol-2-thione moieties are reported in the literature, albeit without crystallographic data (Cerrada et al., 1999 ▸; Takimiya et al., 2002 ▸). To date, no such compounds are known with 1,3-ene-di­thiol-2-one moieties. A few examples are available for distantly related compounds in which cyclic alkenes are bridged by a diselenide moiety. Already in 1981, the synthesis, characterization and crystal structure of such a diselenide was described by Ruban et al.: bis­{4-(2-thien­yl)selenolo[3,4-b]thio­phen-6-yl}diselenide was formed unexpectedly by the reaction of 2-[(tri­phenyl­phospho­nio)meth­yl] thio­phene chloride with sodium hydrogen selenite (Ruban et al., 1981 ▸). In 2000, Oilunkaniemi et al. published a procedure for the synthesis of thienyl- and furyl diselenide compounds, which was confirmed by respective crystal structures and selenium NMR spectra (Oilunkaniemi et al., 2000 ▸). Kumar & Nangia (2000 ▸) published the crystal structure of 2,2‘-di­seleno­bis­(4,4-di­phenyl­cyclo-hexa-2,5-dienone). In 2003, Thaler et al. synthesized cyclo­penta­dienyl selenium compounds as multifunctional ligand systems with a varied number of selenium atoms in the Se bridge (Thaler et al., 2003 ▸). Recently, the formation of a diselenide as a byproduct during the synthesis of heliannuol C (as confirmed by X-ray diffraction) was described by Biswas et al. (2017 ▸). The crystal structures of bis­[4-methyl-1,3-di­thiol-2-one] di­sulfide and diselenide described in the current work are the first in which two 1,3-ene-di­thiol-2-one moieties are linked by an S—S and an SeSe bridge, respectively. For the latter, even the chemical structure is entirely unprecedented.

Synthesis and crystallization

Preparation of bis­[4-methyl-1,3-di­thiol-2-one] di­sulfide: This was undertaken by a modification of a published procedure (Dinsmore et al., 1998 ▸). 4-Methyl-1,3-di­thiol-2-one (0.95 g, 7.2 mmol) and tri­butyl­tin chloride (2.92 ml, 8.63 mmol) in dry THF (10 ml) under nitro­gen were cooled to 169 K (N2/MeOH:Et2O or dry ice/Et2O), and LDA (9.8 ml, 7.9 mmol, 10% solution in hexa­ne) was added dropwise over 5 min. The mixture was allowed to stand for 35 min, warmed to ice-bath temperature and after a further 10 minutes quenched with a saturated aqueous solution of NH4Cl (around 20 ml). The organic phase was diluted with EtOAc, separated and the aqueous phase re-extracted with Et2O (2 × 15 ml). The combined organic phases were washed with brine, dried and the solvent evaporated in vacuo to give a yellowish oil as crude product. This was purified by chromatography (silica gel), eluting with EtOAc/petroleum ether (40/60) 3:97 v/v to give 4-methyl-5-tri-n-butyl­stannyl-1,3-di­thiol-2-one as the major product. During purification, a yellowish oily fraction was isolated and subsequently stored at 253 K, forming large yellow crystals. Crystallographic evaluation of these crystals reveals the formation of the side product bis­[4-methyl-1,3-di­thiol-2-one] di­sulfide. Preparation of bis­[4-methyl-1,3-di­thiol-2-one] diselenide: The synthesis was carried out under an inert gas atmosphere of nitro­gen, whereas the purification steps were carried out in air. To a solution of 4-methyl-5-tri-n-butyl­stannyl-1,3-di­thiol-2-one (352.5 mg, 0.84 mmol) in freshly distilled dioxane (5 ml) was added freshly sublimed selenium dioxide (134.2 mg, 1.21 mmol). The reaction mixture was heated at reflux temperature for 6 h. After cooling, the solution was filtered through celite. Solvent removal gave an orange solid (188.0 mg, 0.38 mmol, 45%). Yellow crystals suitable for crystallographic analysis were obtained by recrystallization from acetone.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 3 ▸. The six methyl hydrogen atoms of each structure were included in calculated positions and treated as riding with C—H = 0.98 Å and U so(H) = 1.5U eq(C).
Table 3

Experimental details

 C8H6O2S6 C8H6O2S4Se2
Crystal data
M r 326.49420.29
Crystal system, space groupMonoclinic, P21/c Monoclinic, P21/c
Temperature (K)170170
a, b, c (Å)10.845 (2), 9.0387 (18), 13.370 (3)10.960 (2), 9.1348 (18), 13.495 (3)
β (°)108.95 (3)108.29 (3)
V3)1239.6 (4)1282.8 (5)
Z 44
Radiation typeMo KαMo Kα
μ (mm−1)1.086.40
Crystal size (mm)0.50 × 0.20 × 0.0010.48 × 0.43 × 0.41
 
Data collection
DiffractometerSTOE IPDS2TStoe IPDS2T
Absorption correctionNumerical face indexedNumerical face indexed
T min, T max 0.771, 0.9420.393, 0.786
No. of measured, independent and observed [I > 2σ(I)] reflections13324, 3344, 263610805, 2733, 2009
R int 0.0340.063
(sin θ/λ)max−1)0.6870.636
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.027, 0.064, 1.030.029, 0.058, 0.97
No. of reflections33442733
No. of parameters147147
H-atom treatmentH-atom parameters constrainedH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.36, −0.340.41, −0.51

Computer programs: X-AREA (Stoe & Cie, 2010 ▸), SIR92 (Altomare et al., 1994 ▸), SHELXS2016/6 (Sheldrick, 2008 ▸), SHELXL2016/6 (Sheldrick, 2015 ▸), XP (Bruker, 1998 ▸), DIAMOND (Brandenburg, 2001 ▸), Mercury (Macrae et al., 2006 ▸) and CIFTAB (Sheldrick, 2015 ▸).

Crystal structure: contains datablock(s) CSV72a12, it14ii. DOI: 10.1107/S2056989018007454/wm5446sup1.cif Structure factors: contains datablock(s) CSV72a12. DOI: 10.1107/S2056989018007454/wm5446CSV72a12sup2.hkl Structure factors: contains datablock(s) it14ii. DOI: 10.1107/S2056989018007454/wm5446it14iisup3.hkl CCDC references: 1843766, 1843765 Additional supporting information: crystallographic information; 3D view; checkCIF report
C8H6O2S4Se2F(000) = 808
Mr = 420.29Dx = 2.176 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 10.960 (2) ÅCell parameters from 11124 reflections
b = 9.1348 (18) Åθ = 3.2–53.8°
c = 13.495 (3) ŵ = 6.40 mm1
β = 108.29 (3)°T = 170 K
V = 1282.8 (5) Å3Block, yellow
Z = 40.48 × 0.43 × 0.41 mm
Stoe IPDS2T diffractometer2733 independent reflections
Radiation source: fine-focus sealed tube2009 reflections with I > 2σ(I)
Detector resolution: 6.67 pixels mm-1Rint = 0.063
ω scansθmax = 26.9°, θmin = 2.0°
Absorption correction: numerical face indexedh = −13→13
Tmin = 0.393, Tmax = 0.786k = −11→11
10805 measured reflectionsl = −17→17
Refinement on F20 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.029H-atom parameters constrained
wR(F2) = 0.058w = 1/[σ2(Fo2) + (0.0249P)2] where P = (Fo2 + 2Fc2)/3
S = 0.97(Δ/σ)max = 0.001
2733 reflectionsΔρmax = 0.41 e Å3
147 parametersΔρmin = −0.51 e Å3
Experimental. (X-RED32 and X-SHAPE; Stoe, 2010)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
C10.5603 (4)0.9723 (4)0.2588 (3)0.0330 (8)
C20.6767 (3)0.9491 (4)0.4583 (3)0.0283 (7)
C30.5772 (3)0.8578 (4)0.4418 (3)0.0292 (7)
C40.5451 (4)0.7610 (4)0.5199 (3)0.0407 (9)
H4A0.6101750.7732640.5883340.061*
H4B0.5436310.6587020.4977730.061*
H4C0.4605520.7879180.5246430.061*
C50.8143 (4)0.6153 (5)0.3661 (3)0.0430 (10)
H5A0.8579540.7085410.3647960.064*
H5B0.7220810.6264800.3300680.064*
H5C0.8494150.5399600.3310300.064*
C60.8349 (3)0.5707 (4)0.4771 (3)0.0300 (7)
C70.8914 (3)0.6483 (4)0.5642 (3)0.0288 (7)
C80.8162 (4)0.4074 (4)0.6323 (3)0.0333 (8)
O10.5276 (3)1.0021 (3)0.16730 (19)0.0441 (7)
O20.7920 (3)0.3109 (3)0.6837 (2)0.0445 (7)
S10.47447 (9)0.85051 (10)0.31380 (8)0.0387 (2)
S20.69642 (9)1.04502 (9)0.35303 (6)0.02911 (19)
S50.89572 (10)0.57233 (10)0.68357 (7)0.0345 (2)
S60.77748 (10)0.39942 (10)0.49537 (7)0.0368 (2)
Se10.80328 (4)0.98085 (4)0.58945 (3)0.03435 (11)
Se20.96657 (4)0.83504 (4)0.56427 (3)0.03646 (11)
U11U22U33U12U13U23
C10.039 (2)0.0238 (17)0.0322 (19)0.0044 (15)0.0063 (16)−0.0015 (14)
C20.0338 (19)0.0256 (16)0.0271 (17)0.0018 (14)0.0116 (15)−0.0010 (13)
C30.0321 (19)0.0247 (17)0.0331 (18)0.0017 (14)0.0135 (16)−0.0005 (13)
C40.045 (2)0.036 (2)0.048 (2)−0.0067 (17)0.026 (2)0.0043 (17)
C50.050 (3)0.049 (2)0.032 (2)0.0010 (19)0.0172 (19)−0.0009 (16)
C60.0266 (18)0.0348 (18)0.0300 (18)0.0022 (15)0.0108 (15)−0.0002 (14)
C70.0258 (18)0.0295 (17)0.0308 (18)0.0004 (14)0.0085 (15)0.0014 (14)
C80.037 (2)0.0308 (18)0.0375 (19)0.0024 (16)0.0188 (17)−0.0044 (16)
O10.0597 (18)0.0337 (14)0.0289 (13)−0.0022 (13)−0.0007 (13)−0.0016 (11)
O20.0629 (19)0.0320 (14)0.0475 (15)−0.0064 (13)0.0303 (15)−0.0005 (12)
S10.0328 (5)0.0319 (5)0.0450 (5)−0.0072 (4)0.0030 (4)0.0015 (4)
S20.0334 (5)0.0295 (4)0.0240 (4)−0.0052 (4)0.0082 (4)−0.0003 (3)
S50.0448 (6)0.0306 (4)0.0256 (4)−0.0044 (4)0.0075 (4)−0.0008 (3)
S60.0432 (6)0.0337 (5)0.0331 (5)−0.0064 (4)0.0116 (4)−0.0095 (4)
Se10.0484 (2)0.02951 (19)0.02304 (17)−0.00266 (16)0.00823 (15)−0.00313 (14)
Se20.0296 (2)0.0350 (2)0.0410 (2)−0.00724 (16)0.00564 (16)0.00402 (16)
C1—O11.203 (4)C5—H5A0.9800
C1—S21.759 (4)C5—H5B0.9800
C1—S11.765 (4)C5—H5C0.9800
C2—C31.335 (5)C6—C71.346 (5)
C2—S21.739 (3)C6—S61.733 (4)
C2—Se11.898 (4)C7—S51.741 (3)
C3—C41.499 (5)C7—Se21.895 (3)
C3—S11.742 (4)C8—O21.202 (4)
C4—H4A0.9800C8—S61.763 (4)
C4—H4B0.9800C8—S51.769 (4)
C4—H4C0.9800Se1—Se22.3397 (7)
C5—C61.498 (5)
O1—C1—S2124.6 (3)C6—C5—H5C109.5
O1—C1—S1123.2 (3)H5A—C5—H5C109.5
S2—C1—S1112.15 (19)H5B—C5—H5C109.5
C3—C2—S2118.9 (3)C7—C6—C5127.9 (3)
C3—C2—Se1124.8 (3)C7—C6—S6116.0 (3)
S2—C2—Se1116.29 (19)C5—C6—S6116.1 (3)
C2—C3—C4127.6 (3)C6—C7—S5118.1 (3)
C2—C3—S1115.4 (3)C6—C7—Se2123.7 (3)
C4—C3—S1117.0 (3)S5—C7—Se2118.23 (18)
C3—C4—H4A109.5O2—C8—S6123.4 (3)
C3—C4—H4B109.5O2—C8—S5124.7 (3)
H4A—C4—H4B109.5S6—C8—S5111.8 (2)
C3—C4—H4C109.5C3—S1—C197.42 (17)
H4A—C4—H4C109.5C2—S2—C196.07 (17)
H4B—C4—H4C109.5C7—S5—C896.36 (17)
C6—C5—H5A109.5C6—S6—C897.68 (17)
C6—C5—H5B109.5C7—Se2—Se199.23 (10)
H5A—C5—H5B109.5C2—Se1—Se298.40 (10)
D—H···AD—HH···AD···AD—H···A
C4—H4A···Se10.982.843.354 (4)114
C5—H5A···Se20.982.833.341 (4)114
C4—H4B···O1i0.982.553.369 (5)141
C5—H5C···Se1ii0.983.143.801 (4)126
C5—H5C···S5iii0.983.043.850 (4)141
C4—H4C···S2iv0.983.133.992 (4)148
C8H6O2S6F(000) = 664
Mr = 326.49Dx = 1.749 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 13753 reflections
a = 10.845 (2) Åθ = 6.4–58.5°
b = 9.0387 (18) ŵ = 1.08 mm1
c = 13.370 (3) ÅT = 170 K
β = 108.95 (3)°Plate, yellow
V = 1239.6 (4) Å30.50 × 0.20 × 0.001 mm
Z = 4
STOE IPDS2T diffractometer3344 independent reflections
Radiation source: fine-focus sealed tube2636 reflections with I > 2σ(I)
Detector resolution: 6.67 pixels mm-1Rint = 0.034
ω scansθmax = 29.2°, θmin = 3.2°
Absorption correction: numerical face indexedh = −14→11
Tmin = 0.771, Tmax = 0.942k = −12→12
13324 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.027Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.064H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.031P)2 + 0.2272P] where P = (Fo2 + 2Fc2)/3
3344 reflections(Δ/σ)max = 0.001
147 parametersΔρmax = 0.36 e Å3
0 restraintsΔρmin = −0.34 e Å3
Experimental. (X-RED32 and X-SHAPE; Stoe, 2010)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.56140 (18)0.97691 (18)0.25987 (13)0.0303 (3)
C20.68624 (16)0.94540 (18)0.46161 (11)0.0264 (3)
C30.58060 (16)0.85986 (19)0.44516 (12)0.0283 (3)
C40.54816 (19)0.7632 (2)0.52398 (15)0.0377 (4)
H4A0.6168460.7717960.5927000.057*
H4B0.5416610.6601790.5000520.057*
H4C0.4647370.7944360.5308380.057*
C50.8123 (2)0.6221 (2)0.36279 (14)0.0432 (4)
H5A0.8560720.7166640.3617460.065*
H5B0.7184580.6332490.3264460.065*
H5C0.8472810.5466220.3267680.065*
C60.83515 (16)0.5762 (2)0.47454 (13)0.0310 (3)
C70.89133 (16)0.6551 (2)0.56261 (13)0.0298 (3)
C80.82334 (18)0.4069 (2)0.63253 (14)0.0345 (4)
O10.52663 (15)1.00821 (15)0.16765 (9)0.0419 (3)
O20.80246 (16)0.30792 (16)0.68404 (11)0.0476 (3)
S10.47149 (4)0.85968 (5)0.31651 (4)0.03579 (11)
S20.70545 (4)1.04272 (5)0.35471 (3)0.02809 (9)
S30.80927 (5)0.96538 (5)0.58353 (3)0.03365 (10)
S40.95479 (4)0.83296 (5)0.56233 (4)0.03649 (11)
S50.89988 (5)0.57621 (5)0.68428 (3)0.03564 (11)
S60.78190 (5)0.40033 (5)0.49318 (3)0.03672 (11)
U11U22U33U12U13U23
C10.0363 (9)0.0215 (8)0.0301 (7)0.0009 (6)0.0065 (6)−0.0033 (6)
C20.0309 (8)0.0246 (8)0.0253 (7)0.0014 (6)0.0113 (6)−0.0017 (6)
C30.0306 (8)0.0246 (8)0.0321 (7)0.0016 (6)0.0136 (6)−0.0012 (6)
C40.0428 (10)0.0325 (9)0.0453 (9)−0.0018 (8)0.0247 (8)0.0031 (7)
C50.0495 (11)0.0536 (12)0.0298 (8)0.0029 (9)0.0174 (8)−0.0026 (8)
C60.0253 (8)0.0377 (9)0.0321 (7)0.0022 (7)0.0125 (6)−0.0032 (7)
C70.0232 (7)0.0338 (9)0.0313 (7)0.0011 (6)0.0075 (6)−0.0001 (6)
C80.0353 (9)0.0333 (9)0.0383 (8)0.0016 (7)0.0164 (7)−0.0036 (7)
O10.0567 (9)0.0324 (7)0.0277 (6)−0.0020 (6)0.0014 (6)−0.0005 (5)
O20.0646 (10)0.0338 (7)0.0514 (8)−0.0031 (7)0.0285 (7)0.0010 (6)
S10.0296 (2)0.0294 (2)0.0422 (2)−0.00548 (17)0.00317 (17)0.00138 (17)
S20.0311 (2)0.0284 (2)0.02544 (17)−0.00528 (16)0.01009 (15)−0.00122 (14)
S30.0417 (2)0.0317 (2)0.02435 (17)−0.00303 (18)0.00641 (16)−0.00476 (15)
S40.0255 (2)0.0372 (2)0.0426 (2)−0.00639 (17)0.00532 (17)0.00179 (18)
S50.0422 (2)0.0332 (2)0.02811 (18)−0.00173 (18)0.00668 (16)−0.00185 (16)
S60.0386 (2)0.0352 (2)0.0367 (2)−0.00491 (18)0.01269 (18)−0.01011 (17)
C1—O11.200 (2)C5—H5A0.9800
C1—S21.7652 (19)C5—H5B0.9800
C1—S11.7682 (19)C5—H5C0.9800
C2—C31.340 (2)C6—C71.342 (2)
C2—S21.7473 (16)C6—S61.7363 (19)
C2—S31.7486 (17)C7—S41.7494 (18)
C3—C41.496 (2)C7—S51.7507 (17)
C3—S11.7426 (18)C8—O21.195 (2)
C4—H4A0.9800C8—S61.7700 (18)
C4—H4B0.9800C8—S51.7710 (19)
C4—H4C0.9800S3—S42.0723 (7)
C5—C61.492 (2)
O1—C1—S2124.61 (15)C6—C5—H5C109.5
O1—C1—S1123.25 (15)H5A—C5—H5C109.5
S2—C1—S1112.13 (9)H5B—C5—H5C109.5
C3—C2—S2118.62 (12)C7—C6—C5127.68 (18)
C3—C2—S3124.44 (12)C7—C6—S6115.98 (13)
S2—C2—S3116.93 (10)C5—C6—S6116.34 (14)
C2—C3—C4127.26 (16)C6—C7—S4123.61 (14)
C2—C3—S1115.65 (12)C6—C7—S5118.09 (14)
C4—C3—S1117.07 (13)S4—C7—S5118.30 (10)
C3—C4—H4A109.5O2—C8—S6123.42 (15)
C3—C4—H4B109.5O2—C8—S5125.06 (15)
H4A—C4—H4B109.5S6—C8—S5111.52 (10)
C3—C4—H4C109.5C3—S1—C197.47 (8)
H4A—C4—H4C109.5C2—S2—C196.03 (8)
H4B—C4—H4C109.5C2—S3—S4101.38 (6)
C6—C5—H5A109.5C7—S4—S3102.29 (6)
C6—C5—H5B109.5C7—S5—C896.44 (8)
H5A—C5—H5B109.5C6—S6—C897.92 (8)
D—H···AD—HH···AD···AD—H···A
C4—H4A···S30.982.763.244 (2)111
C5—H5A···S40.982.753.234 (2)111
C4—H4B···O1i0.982.533.345 (2)141
C5—H5C···S3ii0.983.143.8063 (19)126
C5—H5C···S5iii0.983.013.825 (2)142
C4—H4C···S2iv0.983.124.021 (2)153
  14 in total

1.  2,2'-diselenobis(4,4-diphenylcyclohexa-2,5-dienone)

Authors: 
Journal:  Acta Crystallogr C       Date:  2000-01       Impact factor: 1.172

Review 2.  Thioredoxin reductase.

Authors:  D Mustacich; G Powis
Journal:  Biochem J       Date:  2000-02-15       Impact factor: 3.857

3.  Molecular cloning and characterization of a mitochondrial selenocysteine-containing thioredoxin reductase from rat liver.

Authors:  S R Lee; J R Kim; K S Kwon; H W Yoon; R L Levine; A Ginsburg; S G Rhee
Journal:  J Biol Chem       Date:  1999-02-19       Impact factor: 5.157

4.  Mitochondrial thioredoxin reductase in bovine adrenal cortex its purification, properties, nucleotide/amino acid sequences, and identification of selenocysteine.

Authors:  S Watabe; Y Makino; K Ogawa; T Hiroi; Y Yamamoto; S Y Takahashi
Journal:  Eur J Biochem       Date:  1999-08

Review 5.  Thioredoxin reductase two modes of catalysis have evolved.

Authors:  C H Williams; L D Arscott; S Müller; B W Lennon; M L Ludwig; P F Wang; D M Veine; K Becker; R H Schirmer
Journal:  Eur J Biochem       Date:  2000-10

6.  Novel selenoproteins identified in silico and in vivo by using a conserved RNA structural motif.

Authors:  A Lescure; D Gautheret; P Carbon; A Krol
Journal:  J Biol Chem       Date:  1999-12-31       Impact factor: 5.157

7.  Molecular single-bond covalent radii for elements 1-118.

Authors:  Pekka Pyykkö; Michiko Atsumi
Journal:  Chemistry       Date:  2009       Impact factor: 5.236

8.  S,C- and S,S-coupling via dithiolate transfer reactions from tin to nickel complexes.

Authors:  Elena Cerrada; Ana Moreno; Mariano Laguna
Journal:  Dalton Trans       Date:  2009-07-15       Impact factor: 4.390

9.  Crystal structure of seleno-l-cystine di-hydro-chloride.

Authors:  Carl Henrik Görbitz; Vladimir Levchenko; Jevgenijs Semjonovs; Mohamed Yusuf Sharif
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-05-30

10.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

View more
  1 in total

Review 1.  Zero-, one-, two- and three-dimensional supramolecular architectures sustained by SeO chalcogen bonding: A crystallographic survey.

Authors:  Edward R T Tiekink
Journal:  Coord Chem Rev       Date:  2020-10-17       Impact factor: 22.315

  1 in total

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