| Literature DB >> 29949918 |
Tong Zhang1, Wendi Feng2, Jiajie Ye3, Zhanbiao Li4, Guohui Zhou5.
Abstract
Southern rice black-streaked dwarf virus (SRBSDV) is a devastating newly emerged rice reovirus in Eastern and Southeastern Asia transmitted by a long-distance migratory pest, the white-backed planthopper (WBPH). We previously showed that SRBSDV infection decreased the cold tolerance but improved the heat tolerance of its vector, WBPH. Comparative metabolomic analysis was used to explore the potential mechanisms underlying these changes in temperature stress response. Fourth-generation WBPH nymphs were treated with SRBSDV and/or extreme temperature stress and were analyzed using gas chromatography-time of flight-mass spectrometry. A total of 605 distinguishable peaks were identified and 165, 207, and 202 differentially accumulated metabolites were identified in WBPH after virus infection, cold, or heat stress, respectively. The nucleic acids and fatty acids were the major categories of metabolites regulated by SRBSDV infection, whereas temperature stress regulated tricarboxylic acid cycle compounds, sugars, and polyols. For the WBPH samples infected with SRBSDV and subjected to temperature stress, amino acids, sugars, and polyols were the most significant regulated metabolites. The metabolomics study suggests that SRBSDV may influence the extreme temperature tolerance of WBPH by regulating the accumulation of amino acids, sugars, and polyols in the insect body.Entities:
Keywords: Southern rice black-streaked dwarf virus (SRBSDV); differential metabolite accumulation; gas chromatography-time of flight-mass spectrometry (GC-TOF-MS); temperature stress; white-backed planthopper (WBPH)
Mesh:
Year: 2018 PMID: 29949918 PMCID: PMC6071123 DOI: 10.3390/v10070344
Source DB: PubMed Journal: Viruses ISSN: 1999-4915 Impact factor: 5.048
Figure 1Overview of this metabolomic study. (a) Experimental design and work flow of this study. (b) Scores plot of the principle components analysis (PCA) model of the gas chromatography-time of flight-mass spectrometry (GC-TOF-MS) data of all samples. (c) Venn diagram of the numbers of differentially accumulated metabolites induced by virus infection under cold stress (left) and heat stress (right). Note: CK, the unstressed white-backed planthopper (WBPH) sample; C, cold-stressed WBPH sample; H, heat-stressed WBPH sample; V, Southern rice black-streaked dwarf virus (SRBSDV)-carrying WBPH sample; CV, cold-stressed SRBSDV-carrying WBPH sample; HV, heat-stressed SRBSDV-carrying WBPH sample; and QC, quality control sample.
Major metabolite changes in white-backed planthopper (WBPH) with Southern rice black-streaked dwarf virus (SRBSDV infection). By gas chromatography-time of flight-mass spectrometry (GC-TOF-MS) analyses of six biological replicates of virus-carrying and virus-free WBPH at 25 °C, the metabolites that had a variable influence on projections (VIP) > 1.0 and p-value < 0.05 were considered to be significantly altered metabolites. Nucleic acids, sugars and polyols, and fatty acids were selected to show in the table.
| Category | Peak | Similarity | VIP | Fold Change | |
|---|---|---|---|---|---|
| Nucleic acids | Adenine | 753 | 1.35 | 0.019 | 1.17 |
| Adenosine | 812 | 1.84 | 2.91 × 10–5 | 1.17 | |
| Uracil | 968 | 1.48 | 0.007 | 1.05 | |
| Guanosine | 813 | 1.61 | 0.002 | 1.10 | |
| Inosine | 909 | 1.73 | 2.82 × 10–4 | 1.09 | |
| Uridine | 688 | 1.80 | 5.14 × 10–5 | 0.76 | |
| Sugars and polyols | Trehalose | 946 | 2.00 | 6.64 × 10–13 | 0.65 |
| Phosphate | 772 | 1.39 | 0.025 | 2.31 × 107 | |
| Lactic acid | 967 | 1.59 | 0.003 | 1.14 | |
| Fatty acids | Myristic acid | 846 | 1.34 | 0.023 | 1.11 |
| Oleic acid | 863 | 1.68 | 0.004 | 3.27 × 106 | |
| Palmitoleic acid | 902 | 1.18 | 0.044 | 1.05 |
Major metabolite changes in WBPH under cold stress. By GC-TOF-MS analyses of six biological replicates of cold-stressed and unstressed virus-free WBPH, the metabolites that had a VIP > 1.0 and p-value < 0.05 were considered to be significantly altered metabolites, and the metabolites involved in TCA cycle, sugars, and polyols were selected to show in the table.
| Category | Peak | Similarity | VIP | Fold Change | |
|---|---|---|---|---|---|
| TCA cycle | Oxalacetic acid | 470 | 1.67 | 7.21 × 10–4 | 1.90 |
| Pyruvic acid | 926 | 1.59 | 1.50 × 10–4 | 1.50 | |
| α-Ketoglutaric acid | 910 | 1.75 | 1.36 × 10–8 | 1.44 | |
| Citric acid | 881 | 1.24 | 0.015 | 0.95 | |
| Fumaric acid | 654 | 1.19 | 0.017 | 0.78 | |
| 888 | 1.78 | 2.92 × 10–10 | 0.55 | ||
| Sugars and polyols | Glucose | 336 | 1.08 | 0.032 | 0.82 |
| Palatinitol | 411 | 1.34 | 6.60 × 10–3 | 0.82 | |
| Sucrose | 778 | 1.79 | 6.52 × 10–7 | 3.22 × 10–5 | |
| 2-Deoxyerythritol | 785 | 1.76 | 3.25 × 10–8 | 0.47 | |
| 1,5-Anhydroglucitol | 436 | 1.55 | 1.69 × 10–5 | 0.07 |
Major metabolite changes in WBPH under heat stress. By GC-TOF-MS analyses of six biological replicates of heat-stressed and unstressed virus-free WBPH, the metabolites that had a VIP > 1.0 and p-value < 0.05 were considered to be significantly altered metabolites, and the metabolites involved in TCA cycle were selected to show in the table.
| Category | Peak | Similarity | VIP | Fold Change | |
|---|---|---|---|---|---|
| TCA cycle | Pyruvic acid | 926 | 1.34 | 0.006 | 0.77 |
| α-Ketoglutaric acid | 910 | 1.66 | 1.44 × 10–5 | 0.77 | |
| Citric acid | 881 | 1.76 | 3.14 × 10–10 | 0.29 | |
| 888 | 1.76 | 3.14 × 10–10 | 0.25 |
Major metabolite changes in SRBSDV-infected WBPH under cold stress. By GC-TOF-MS analyses of six biological replicates of cold-stressed and unstressed virus-carrying WBPH, the metabolites that had a VIP > 1.0 and p-value < 0.05 were considered to be significantly altered metabolites, and amino acids, sugars, and polyols were selected to show in the table.
| Category | Peak | Similarity | VIP | Fold Change | |
|---|---|---|---|---|---|
| Amino acids | Asparagine | 911 | 1.73 | 6.98 × 10–7 | 0.70 |
| Glutamine | 891 | 1.24 | 0.020 | 0.64 | |
| Isoleucine | 962 | 1.64 | 3.64 × 10–5 | 0.87 | |
| Lysine | 865 | 1.79 | 7.64 × 10–10 | 0.83 | |
| Methionine | 865 | 1.64 | 4.88 × 10–5 | 0.87 | |
| Phenylalanine | 943 | 1.74 | 1.22 × 10–7 | 0.84 | |
| Proline | 596 | 1.41 | 0.003 | 0.96 | |
| Threonine | 957 | 1.69 | 3.85 × 10–6 | 0.87 | |
| Tryptophan | 897 | 1.78 | 9.77 × 10–11 | 0.81 | |
| Ornithine | 918 | 1.72 | 1.06 × 10–6 | 0.82 | |
| 918 | 1.41 | 0.002 | 0.94 | ||
| β-Alanine | 925 | 1.79 | 4.85 × 10–12 | 0.58 | |
| Sugars and polyols | 929 | 1.73 | 1.70 × 10–6 | 1.23 | |
| Fructose | 958 | 1.72 | 1.82 × 10–6 | 1.12 | |
| Fructose-6-phosphate | 753 | 1.68 | 1.24 × 10–5 | 1.35 | |
| Sucrose | 778 | 1.61 | 4.21 × 10–5 | 1.30 | |
| Tagatose | 725 | 1.25 | 0.010 | 1.28 | |
| Trehalose | 946 | 1.77 | 1.81 × 10–8 | 1.15 | |
| Glycerol | 823 | 1.70 | 2.56 × 10–6 | 1.17 |
Major metabolite changes in SRBSDV-infected WBPH under heat stress. By GC-TOF-MS analyses of six biological replicates of heat-stressed and unstressed virus-carrying WBPH, the metabolites that had a VIP > 1.0 and p-value < 0.05 were considered to be significantly altered metabolites, and amino acids, sugars, and polyols were selected to show in the table.
| Category | Peak | Similarity | VIP | Fold Change | |
|---|---|---|---|---|---|
| Amino acids | Alanine | 800 | 1.67 | 2.11 × 10–11 | 1.32 |
| Asparagine | 911 | 1.65 | 3.86 × 10–9 | 1.58 | |
| Glutamic acid | 866 | 1.62 | 6.20 × 10–7 | 1.37 | |
| Glycine | 860 | 1.46 | 1.78 × 10–4 | 1.23 | |
| Methionine | 865 | 1.61 | 1.04 × 10–6 | 1.21 | |
| Proline | 596 | 1.66 | 4.35 × 10–10 | 1.21 | |
| Serine | 964 | 1.15 | 0.015 | 1.05 | |
| Threonine | 957 | 1.67 | 9.44 × 10–11 | 1.74 | |
| Valine | 880 | 1.62 | 6.08 × 10–7 | 1.27 | |
| β-Alanine | 925 | 1.66 | 7.49 × 10–9 | 1.42 | |
| Norvaline | 614 | 1.57 | 5.50 × 10–6 | 1.45 | |
| Ornithine | 945 | 1.59 | 2.89 × 10–6 | 1.39 | |
| 918 | 1.65 | 1.99 × 10–8 | 1.39 | ||
| Sugars and polyols | Allose | 589 | 1.43 | 6.02 × 10–4 | 3.12 |
| 601 | 1.47 | 1.67 × 10–4 | 4.19 | ||
| 929 | 1.61 | 6.77 × 10–7 | 1.25 | ||
| Fructose | 958 | 1.47 | 2.24 × 10–4 | 1.08 | |
| Lactose | 547 | 1.05 | 0.042 | 1.79 | |
| Trehalose | 946 | 1.24 | 0.029 | 1.22 | |
| Lactulose | 488 | 1.09 | 0.022 | 1.87 | |
| 2-Deoxyerythritol | 785 | 1.27 | 0.005 | 1.15 | |
| 1,5-Anhydroglucitol | 436 | 1.09 | 0.026 | 1.12 | |
| Glycerol | 823 | 1.05 | 0.030 | 1.04 |