Literature DB >> 29942086

Genome-wide association meta-analysis in 269,867 individuals identifies new genetic and functional links to intelligence.

Jeanne E Savage1, Philip R Jansen1,2, Sven Stringer1, Kyoko Watanabe1, Julien Bryois3, Christiaan A de Leeuw1, Mats Nagel4, Swapnil Awasthi5, Peter B Barr6, Jonathan R I Coleman7,8, Katrina L Grasby9, Anke R Hammerschlag1, Jakob A Kaminski5,10, Robert Karlsson3, Eva Krapohl7, Max Lam11, Marianne Nygaard12,13, Chandra A Reynolds14, Joey W Trampush15,16, Hannah Young17, Delilah Zabaneh7, Sara Hägg3, Narelle K Hansell18, Ida K Karlsson3, Sten Linnarsson19, Grant W Montgomery9,20, Ana B Muñoz-Manchado19, Erin B Quinlan21, Gunter Schumann21, Nathan G Skene19,22, Bradley T Webb23,24, Tonya White2, Dan E Arking25, Dimitrios Avramopoulos25,26, Robert M Bilder27, Panos Bitsios28, Katherine E Burdick29,30,31, Tyrone D Cannon32, Ornit Chiba-Falek33, Andrea Christoforou34, Elizabeth T Cirulli35, Eliza Congdon27, Aiden Corvin36, Gail Davies37,38, Ian J Deary37,38, Pamela DeRosse39,40,41, Dwight Dickinson42, Srdjan Djurovic43,44, Gary Donohoe45, Emily Drabant Conley46, Johan G Eriksson47, Thomas Espeseth48,49, Nelson A Freimer27, Stella Giakoumaki50, Ina Giegling51, Michael Gill36, David C Glahn52, Ahmad R Hariri53, Alex Hatzimanolis54,55,56, Matthew C Keller57, Emma Knowles52, Deborah Koltai58, Bettina Konte51, Jari Lahti59,60, Stephanie Le Hellard34,44, Todd Lencz39,40,41, David C Liewald38, Edythe London27,61, Astri J Lundervold62,63, Anil K Malhotra39,40,41, Ingrid Melle44,49, Derek Morris45, Anna C Need64, William Ollier65, Aarno Palotie66,67,68, Antony Payton69, Neil Pendleton70, Russell A Poldrack71, Katri Räikkönen72, Ivar Reinvang48, Panos Roussos29,30,73, Dan Rujescu51, Fred W Sabb74, Matthew A Scult53, Olav B Smeland75, Nikolaos Smyrnis54,55, John M Starr37,76, Vidar M Steen34,44, Nikos C Stefanis54,55,56, Richard E Straub77, Kjetil Sundet48,49, Henning Tiemeier2,78, Aristotle N Voineskos79, Daniel R Weinberger77, Elisabeth Widen66, Jin Yu39, Goncalo Abecasis80,81, Ole A Andreassen49,75,82, Gerome Breen7,8, Lene Christiansen12,13, Birgit Debrabant13, Danielle M Dick6,83,84, Andreas Heinz5, Jens Hjerling-Leffler19, M Arfan Ikram78, Kenneth S Kendler23,24,83, Nicholas G Martin9, Sarah E Medland9, Nancy L Pedersen3, Robert Plomin7, Tinca J C Polderman1, Stephan Ripke5,85,86, Sophie van der Sluis4, Patrick F Sullivan3,87, Scott I Vrieze17, Margaret J Wright18,88, Danielle Posthuma89,90.   

Abstract

Intelligence is highly heritable1 and a major determinant of human health and well-being2. Recent genome-wide meta-analyses have identified 24 genomic loci linked to variation in intelligence3-7, but much about its genetic underpinnings remains to be discovered. Here, we present a large-scale genetic association study of intelligence (n = 269,867), identifying 205 associated genomic loci (190 new) and 1,016 genes (939 new) via positional mapping, expression quantitative trait locus (eQTL) mapping, chromatin interaction mapping, and gene-based association analysis. We find enrichment of genetic effects in conserved and coding regions and associations with 146 nonsynonymous exonic variants. Associated genes are strongly expressed in the brain, specifically in striatal medium spiny neurons and hippocampal pyramidal neurons. Gene set analyses implicate pathways related to nervous system development and synaptic structure. We confirm previous strong genetic correlations with multiple health-related outcomes, and Mendelian randomization analysis results suggest protective effects of intelligence for Alzheimer's disease and ADHD and bidirectional causation with pleiotropic effects for schizophrenia. These results are a major step forward in understanding the neurobiology of cognitive function as well as genetically related neurological and psychiatric disorders.

Entities:  

Mesh:

Year:  2018        PMID: 29942086      PMCID: PMC6411041          DOI: 10.1038/s41588-018-0152-6

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  47 in total

1.  Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits.

Authors:  S Purcell; S S Cherny; P C Sham
Journal:  Bioinformatics       Date:  2003-01       Impact factor: 6.937

Review 2.  Intelligence.

Authors:  Ian J Deary
Journal:  Annu Rev Psychol       Date:  2011-09-19       Impact factor: 24.137

3.  Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets.

Authors:  Zhihong Zhu; Futao Zhang; Han Hu; Andrew Bakshi; Matthew R Robinson; Joseph E Powell; Grant W Montgomery; Michael E Goddard; Naomi R Wray; Peter M Visscher; Jian Yang
Journal:  Nat Genet       Date:  2016-03-28       Impact factor: 38.330

4.  ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.

Authors:  Kai Wang; Mingyao Li; Hakon Hakonarson
Journal:  Nucleic Acids Res       Date:  2010-07-03       Impact factor: 16.971

5.  Human genomics. The Genotype-Tissue Expression (GTEx) pilot analysis: multitissue gene regulation in humans.

Authors: 
Journal:  Science       Date:  2015-05-07       Impact factor: 47.728

6.  Modeling Linkage Disequilibrium Increases Accuracy of Polygenic Risk Scores.

Authors:  Bjarni J Vilhjálmsson; Jian Yang; Hilary K Finucane; Alexander Gusev; Sara Lindström; Stephan Ripke; Giulio Genovese; Po-Ru Loh; Gaurav Bhatia; Ron Do; Tristan Hayeck; Hong-Hee Won; Sekar Kathiresan; Michele Pato; Carlos Pato; Rulla Tamimi; Eli Stahl; Noah Zaitlen; Bogdan Pasaniuc; Gillian Belbin; Eimear E Kenny; Mikkel H Schierup; Philip De Jager; Nikolaos A Patsopoulos; Steve McCarroll; Mark Daly; Shaun Purcell; Daniel Chasman; Benjamin Neale; Michael Goddard; Peter M Visscher; Peter Kraft; Nick Patterson; Alkes L Price
Journal:  Am J Hum Genet       Date:  2015-10-01       Impact factor: 11.025

7.  MAGMA: generalized gene-set analysis of GWAS data.

Authors:  Christiaan A de Leeuw; Joris M Mooij; Tom Heskes; Danielle Posthuma
Journal:  PLoS Comput Biol       Date:  2015-04-17       Impact factor: 4.475

8.  Functional mapping and annotation of genetic associations with FUMA.

Authors:  Kyoko Watanabe; Erdogan Taskesen; Arjen van Bochoven; Danielle Posthuma
Journal:  Nat Commun       Date:  2017-11-28       Impact factor: 14.919

9.  GWAS of 126,559 individuals identifies genetic variants associated with educational attainment.

Authors:  Cornelius A Rietveld; Sarah E Medland; Jaime Derringer; Jian Yang; Tõnu Esko; Nicolas W Martin; Harm-Jan Westra; Konstantin Shakhbazov; Abdel Abdellaoui; Arpana Agrawal; Eva Albrecht; Behrooz Z Alizadeh; Najaf Amin; John Barnard; Sebastian E Baumeister; Kelly S Benke; Lawrence F Bielak; Jeffrey A Boatman; Patricia A Boyle; Gail Davies; Christiaan de Leeuw; Niina Eklund; Daniel S Evans; Rudolf Ferhmann; Krista Fischer; Christian Gieger; Håkon K Gjessing; Sara Hägg; Jennifer R Harris; Caroline Hayward; Christina Holzapfel; Carla A Ibrahim-Verbaas; Erik Ingelsson; Bo Jacobsson; Peter K Joshi; Astanand Jugessur; Marika Kaakinen; Stavroula Kanoni; Juha Karjalainen; Ivana Kolcic; Kati Kristiansson; Zoltán Kutalik; Jari Lahti; Sang H Lee; Peng Lin; Penelope A Lind; Yongmei Liu; Kurt Lohman; Marisa Loitfelder; George McMahon; Pedro Marques Vidal; Osorio Meirelles; Lili Milani; Ronny Myhre; Marja-Liisa Nuotio; Christopher J Oldmeadow; Katja E Petrovic; Wouter J Peyrot; Ozren Polasek; Lydia Quaye; Eva Reinmaa; John P Rice; Thais S Rizzi; Helena Schmidt; Reinhold Schmidt; Albert V Smith; Jennifer A Smith; Toshiko Tanaka; Antonio Terracciano; Matthijs J H M van der Loos; Veronique Vitart; Henry Völzke; Jürgen Wellmann; Lei Yu; Wei Zhao; Jüri Allik; John R Attia; Stefania Bandinelli; François Bastardot; Jonathan Beauchamp; David A Bennett; Klaus Berger; Laura J Bierut; Dorret I Boomsma; Ute Bültmann; Harry Campbell; Christopher F Chabris; Lynn Cherkas; Mina K Chung; Francesco Cucca; Mariza de Andrade; Philip L De Jager; Jan-Emmanuel De Neve; Ian J Deary; George V Dedoussis; Panos Deloukas; Maria Dimitriou; Guðny Eiríksdóttir; Martin F Elderson; Johan G Eriksson; David M Evans; Jessica D Faul; Luigi Ferrucci; Melissa E Garcia; Henrik Grönberg; Vilmundur Guðnason; Per Hall; Juliette M Harris; Tamara B Harris; Nicholas D Hastie; Andrew C Heath; Dena G Hernandez; Wolfgang Hoffmann; Adriaan Hofman; Rolf Holle; Elizabeth G Holliday; Jouke-Jan Hottenga; William G Iacono; Thomas Illig; Marjo-Riitta Järvelin; Mika Kähönen; Jaakko Kaprio; Robert M Kirkpatrick; Matthew Kowgier; Antti Latvala; Lenore J Launer; Debbie A Lawlor; Terho Lehtimäki; Jingmei Li; Paul Lichtenstein; Peter Lichtner; David C Liewald; Pamela A Madden; Patrik K E Magnusson; Tomi E Mäkinen; Marco Masala; Matt McGue; Andres Metspalu; Andreas Mielck; Michael B Miller; Grant W Montgomery; Sutapa Mukherjee; Dale R Nyholt; Ben A Oostra; Lyle J Palmer; Aarno Palotie; Brenda W J H Penninx; Markus Perola; Patricia A Peyser; Martin Preisig; Katri Räikkönen; Olli T Raitakari; Anu Realo; Susan M Ring; Samuli Ripatti; Fernando Rivadeneira; Igor Rudan; Aldo Rustichini; Veikko Salomaa; Antti-Pekka Sarin; David Schlessinger; Rodney J Scott; Harold Snieder; Beate St Pourcain; John M Starr; Jae Hoon Sul; Ida Surakka; Rauli Svento; Alexander Teumer; Henning Tiemeier; Frank J A van Rooij; David R Van Wagoner; Erkki Vartiainen; Jorma Viikari; Peter Vollenweider; Judith M Vonk; Gérard Waeber; David R Weir; H-Erich Wichmann; Elisabeth Widen; Gonneke Willemsen; James F Wilson; Alan F Wright; Dalton Conley; George Davey-Smith; Lude Franke; Patrick J F Groenen; Albert Hofman; Magnus Johannesson; Sharon L R Kardia; Robert F Krueger; David Laibson; Nicholas G Martin; Michelle N Meyer; Danielle Posthuma; A Roy Thurik; Nicholas J Timpson; André G Uitterlinden; Cornelia M van Duijn; Peter M Visscher; Daniel J Benjamin; David Cesarini; Philipp D Koellinger
Journal:  Science       Date:  2013-05-30       Impact factor: 47.728

10.  Systematic identification of trans eQTLs as putative drivers of known disease associations.

Authors:  Harm-Jan Westra; Marjolein J Peters; Tõnu Esko; Hanieh Yaghootkar; Claudia Schurmann; Johannes Kettunen; Mark W Christiansen; Bruce M Psaty; Samuli Ripatti; Alexander Teumer; Timothy M Frayling; Andres Metspalu; Joyce B J van Meurs; Lude Franke; Benjamin P Fairfax; Katharina Schramm; Joseph E Powell; Alexandra Zhernakova; Daria V Zhernakova; Jan H Veldink; Leonard H Van den Berg; Juha Karjalainen; Sebo Withoff; André G Uitterlinden; Albert Hofman; Fernando Rivadeneira; Peter A C 't Hoen; Eva Reinmaa; Krista Fischer; Mari Nelis; Lili Milani; David Melzer; Luigi Ferrucci; Andrew B Singleton; Dena G Hernandez; Michael A Nalls; Georg Homuth; Matthias Nauck; Dörte Radke; Uwe Völker; Markus Perola; Veikko Salomaa; Jennifer Brody; Astrid Suchy-Dicey; Sina A Gharib; Daniel A Enquobahrie; Thomas Lumley; Grant W Montgomery; Seiko Makino; Holger Prokisch; Christian Herder; Michael Roden; Harald Grallert; Thomas Meitinger; Konstantin Strauch; Yang Li; Ritsert C Jansen; Peter M Visscher; Julian C Knight
Journal:  Nat Genet       Date:  2013-09-08       Impact factor: 38.330

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Journal:  Cell       Date:  2019-11-21       Impact factor: 41.582

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3.  SynGO: An Evidence-Based, Expert-Curated Knowledge Base for the Synapse.

Authors:  Frank Koopmans; Pim van Nierop; Maria Andres-Alonso; Andrea Byrnes; Tony Cijsouw; Marcelo P Coba; L Niels Cornelisse; Ryan J Farrell; Hana L Goldschmidt; Daniel P Howrigan; Natasha K Hussain; Cordelia Imig; Arthur P H de Jong; Hwajin Jung; Mahdokht Kohansalnodehi; Barbara Kramarz; Noa Lipstein; Ruth C Lovering; Harold MacGillavry; Vittoria Mariano; Huaiyu Mi; Momchil Ninov; David Osumi-Sutherland; Rainer Pielot; Karl-Heinz Smalla; Haiming Tang; Katherine Tashman; Ruud F G Toonen; Chiara Verpelli; Rita Reig-Viader; Kyoko Watanabe; Jan van Weering; Tilmann Achsel; Ghazaleh Ashrafi; Nimra Asi; Tyler C Brown; Pietro De Camilli; Marc Feuermann; Rebecca E Foulger; Pascale Gaudet; Anoushka Joglekar; Alexandros Kanellopoulos; Robert Malenka; Roger A Nicoll; Camila Pulido; Jaime de Juan-Sanz; Morgan Sheng; Thomas C Südhof; Hagen U Tilgner; Claudia Bagni; Àlex Bayés; Thomas Biederer; Nils Brose; John Jia En Chua; Daniela C Dieterich; Eckart D Gundelfinger; Casper Hoogenraad; Richard L Huganir; Reinhard Jahn; Pascal S Kaeser; Eunjoon Kim; Michael R Kreutz; Peter S McPherson; Ben M Neale; Vincent O'Connor; Danielle Posthuma; Timothy A Ryan; Carlo Sala; Guoping Feng; Steven E Hyman; Paul D Thomas; August B Smit; Matthijs Verhage
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4.  Cognition in schizophrenia: a marker of underlying neurodevelopmental problems?

Authors:  Ingrid Melle
Journal:  World Psychiatry       Date:  2019-06       Impact factor: 49.548

5.  Generation of Neural Stem Cells from Pluripotent Stem Cells for Characterization of Early Neuronal Development.

Authors:  Matthias Jung; Jovita Schiller; Carla Hartmann; Jenny Pfeifer; Dan Rujescu
Journal:  Methods Mol Biol       Date:  2021

6.  The interplay between genetics, cognition and schizophrenia.

Authors:  Maria Stella Calafato; Elvira Bramon
Journal:  Brain       Date:  2019-02-01       Impact factor: 13.501

Review 7.  Resistance, vulnerability and resilience: A review of the cognitive cerebellum in aging and neurodegenerative diseases.

Authors:  Katharine J Liang; Erik S Carlson
Journal:  Neurobiol Learn Mem       Date:  2019-01-07       Impact factor: 2.877

8.  Identification of Genetic Loci Shared Between Attention-Deficit/Hyperactivity Disorder, Intelligence, and Educational Attainment.

Authors:  Kevin S O'Connell; Alexey Shadrin; Olav B Smeland; Shahram Bahrami; Oleksandr Frei; Francesco Bettella; Florian Krull; Chun C Fan; Ragna B Askeland; Gun Peggy S Knudsen; Anne Halmøy; Nils Eiel Steen; Torill Ueland; G Bragi Walters; Katrín Davíðsdóttir; Gyða S Haraldsdóttir; Ólafur Ó Guðmundsson; Hreinn Stefánsson; Ted Reichborn-Kjennerud; Jan Haavik; Anders M Dale; Kári Stefánsson; Srdjan Djurovic; Ole A Andreassen
Journal:  Biol Psychiatry       Date:  2019-11-29       Impact factor: 13.382

9.  Pleiotropic Meta-Analysis of Cognition, Education, and Schizophrenia Differentiates Roles of Early Neurodevelopmental and Adult Synaptic Pathways.

Authors:  Max Lam; W David Hill; Joey W Trampush; Jin Yu; Emma Knowles; Gail Davies; Eli Stahl; Laura Huckins; David C Liewald; Srdjan Djurovic; Ingrid Melle; Kjetil Sundet; Andrea Christoforou; Ivar Reinvang; Pamela DeRosse; Astri J Lundervold; Vidar M Steen; Thomas Espeseth; Katri Räikkönen; Elisabeth Widen; Aarno Palotie; Johan G Eriksson; Ina Giegling; Bettina Konte; Annette M Hartmann; Panos Roussos; Stella Giakoumaki; Katherine E Burdick; Antony Payton; William Ollier; Ornit Chiba-Falek; Deborah K Attix; Anna C Need; Elizabeth T Cirulli; Aristotle N Voineskos; Nikos C Stefanis; Dimitrios Avramopoulos; Alex Hatzimanolis; Dan E Arking; Nikolaos Smyrnis; Robert M Bilder; Nelson A Freimer; Tyrone D Cannon; Edythe London; Russell A Poldrack; Fred W Sabb; Eliza Congdon; Emily Drabant Conley; Matthew A Scult; Dwight Dickinson; Richard E Straub; Gary Donohoe; Derek Morris; Aiden Corvin; Michael Gill; Ahmad R Hariri; Daniel R Weinberger; Neil Pendleton; Panos Bitsios; Dan Rujescu; Jari Lahti; Stephanie Le Hellard; Matthew C Keller; Ole A Andreassen; Ian J Deary; David C Glahn; Anil K Malhotra; Todd Lencz
Journal:  Am J Hum Genet       Date:  2019-08-01       Impact factor: 11.025

10.  The Danish Twin Registry: An Updated Overview.

Authors:  Dorthe Almind Pedersen; Lisbeth Aagaard Larsen; Marianne Nygaard; Jonas Mengel-From; Matt McGue; Christine Dalgård; Lars Hvidberg; Jacob Hjelmborg; Axel Skytthe; Niels V Holm; Kirsten Ohm Kyvik; Kaare Christensen
Journal:  Twin Res Hum Genet       Date:  2019-09-23       Impact factor: 1.587

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