Literature DB >> 29942082

De novo variants in neurodevelopmental disorders with epilepsy.

Henrike O Heyne1,2,3,4, Tarjinder Singh5,6, Hannah Stamberger7,8,9, Rami Abou Jamra10, Hande Caglayan11, Dana Craiu12, Peter De Jonghe7,8,9, Renzo Guerrini13, Katherine L Helbig14, Bobby P C Koeleman15, Jack A Kosmicki5,6, Tarja Linnankivi16, Patrick May17, Hiltrud Muhle18, Rikke S Møller19,20, Bernd A Neubauer21, Aarno Palotie5, Manuela Pendziwiat18, Pasquale Striano22, Sha Tang23, Sitao Wu23, Annapurna Poduri24, Yvonne G Weber25, Sarah Weckhuysen7,8,9, Sanjay M Sisodiya26,27, Mark J Daly5,6, Ingo Helbig14,18, Dennis Lal5,6,28, Johannes R Lemke29.   

Abstract

Epilepsy is a frequent feature of neurodevelopmental disorders (NDDs), but little is known about genetic differences between NDDs with and without epilepsy. We analyzed de novo variants (DNVs) in 6,753 parent-offspring trios ascertained to have different NDDs. In the subset of 1,942 individuals with NDDs with epilepsy, we identified 33 genes with a significant excess of DNVs, of which SNAP25 and GABRB2 had previously only limited evidence of disease association. Joint analysis of all individuals with NDDs also implicated CACNA1E as a novel disease-associated gene. Comparing NDDs with and without epilepsy, we found missense DNVs, DNVs in specific genes, age of recruitment, and severity of intellectual disability to be associated with epilepsy. We further demonstrate the extent to which our results affect current genetic testing as well as treatment, emphasizing the benefit of accurate genetic diagnosis in NDDs with epilepsy.

Entities:  

Mesh:

Year:  2018        PMID: 29942082     DOI: 10.1038/s41588-018-0143-7

Source DB:  PubMed          Journal:  Nat Genet        ISSN: 1061-4036            Impact factor:   38.330


  65 in total

Review 1.  Measuring intolerance to mutation in human genetics.

Authors:  Zachary L Fuller; Jeremy J Berg; Hakhamanesh Mostafavi; Guy Sella; Molly Przeworski
Journal:  Nat Genet       Date:  2019-04-08       Impact factor: 38.330

2.  A Recurrent Missense Variant in AP2M1 Impairs Clathrin-Mediated Endocytosis and Causes Developmental and Epileptic Encephalopathy.

Authors:  Ingo Helbig; Tania Lopez-Hernandez; Oded Shor; Peter Galer; Shiva Ganesan; Manuela Pendziwiat; Annika Rademacher; Colin A Ellis; Nadja Hümpfer; Niklas Schwarz; Simone Seiffert; Joseph Peeden; Joseph Shen; Katalin Štěrbová; Trine Bjørg Hammer; Rikke S Møller; Deepali N Shinde; Sha Tang; Lacey Smith; Annapurna Poduri; Roland Krause; Felix Benninger; Katherine L Helbig; Volker Haucke; Yvonne G Weber
Journal:  Am J Hum Genet       Date:  2019-05-16       Impact factor: 11.025

Review 3.  Next-Generation Sequencing in Autism Spectrum Disorder.

Authors:  Stephan J Sanders
Journal:  Cold Spring Harb Perspect Med       Date:  2019-08-01       Impact factor: 6.915

Review 4.  Somatic variants in epilepsy - advancing gene discovery and disease mechanisms.

Authors:  Erin L Heinzen
Journal:  Curr Opin Genet Dev       Date:  2020-05-15       Impact factor: 5.578

5.  Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.

Authors:  F Kyle Satterstrom; Jack A Kosmicki; Jiebiao Wang; Michael S Breen; Silvia De Rubeis; Joon-Yong An; Minshi Peng; Ryan Collins; Jakob Grove; Lambertus Klei; Christine Stevens; Jennifer Reichert; Maureen S Mulhern; Mykyta Artomov; Sherif Gerges; Brooke Sheppard; Xinyi Xu; Aparna Bhaduri; Utku Norman; Harrison Brand; Grace Schwartz; Rachel Nguyen; Elizabeth E Guerrero; Caroline Dias; Catalina Betancur; Edwin H Cook; Louise Gallagher; Michael Gill; James S Sutcliffe; Audrey Thurm; Michael E Zwick; Anders D Børglum; Matthew W State; A Ercument Cicek; Michael E Talkowski; David J Cutler; Bernie Devlin; Stephan J Sanders; Kathryn Roeder; Mark J Daly; Joseph D Buxbaum
Journal:  Cell       Date:  2020-01-23       Impact factor: 41.582

6.  Epilepsy subtype-specific copy number burden observed in a genome-wide study of 17 458 subjects.

Authors:  Lisa-Marie Niestroj; Eduardo Perez-Palma; Daniel P Howrigan; Yadi Zhou; Feixiong Cheng; Elmo Saarentaus; Peter Nürnberg; Remi Stevelink; Mark J Daly; Aarno Palotie; Dennis Lal
Journal:  Brain       Date:  2020-07-01       Impact factor: 13.501

7.  Ultra-Rare Genetic Variation in the Epilepsies: A Whole-Exome Sequencing Study of 17,606 Individuals.

Authors: 
Journal:  Am J Hum Genet       Date:  2019-07-18       Impact factor: 11.025

8.  A Chromatin Accessibility Atlas of the Developing Human Telencephalon.

Authors:  Eirene Markenscoff-Papadimitriou; Sean Whalen; Pawel Przytycki; Reuben Thomas; Fadya Binyameen; Tomasz J Nowakowski; Arnold R Kriegstein; Stephan J Sanders; Matthew W State; Katherine S Pollard; John L Rubenstein
Journal:  Cell       Date:  2020-06-30       Impact factor: 41.582

9.  Altered inhibitory synapses in de novo GABRA5 and GABRA1 mutations associated with early onset epileptic encephalopathies.

Authors:  Ciria C Hernandez; Wenshu XiangWei; Ningning Hu; Dingding Shen; Wangzhen Shen; Andre H Lagrange; Yujia Zhang; Lifang Dai; Changhong Ding; Zhaohui Sun; Jiasheng Hu; Hongmin Zhu; Yuwu Jiang; Robert L Macdonald
Journal:  Brain       Date:  2019-07-01       Impact factor: 13.501

10.  CACNA1H variants are not a cause of monogenic epilepsy.

Authors:  Jeffrey D Calhoun; Alexandra M Huffman; Irena Bellinski; Lisa Kinsley; Elizabeth Bachman; Elizabeth Gerard; Jennifer A Kearney; Gemma L Carvill
Journal:  Hum Mutat       Date:  2020-04-14       Impact factor: 4.878

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